mRNA_L-elsbetiae_contig976.18717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig976.18717.1
Unique NamemRNA_L-elsbetiae_contig976.18717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig976.18717.1 vs. uniprot
Match: D7FT29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT29_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-11
Identity = 50/100 (50.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:  139 FLLLDASDQAITLCWDREPDVSVECVQMKAFT---------------GAAAXXXXXXXXXXXXXXXXGGSREAGVNEDDWATLSETLGSSALKKNKLAPG 393
            FLLLDA+DQAITLCW+R PDVSVE VQMK  T               G+            XXXXXX           DW TLS++LGSSAL+K KLAPG
Sbjct:    4 FLLLDATDQAITLCWERGPDVSVEEVQMKMKTTPANDQQRQQQEVKDGSEVGNEVAPSSGSXXXXXXXXXXXXXXXXXDWVTLSKSLGSSALRKKKLAPG 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig976.18717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT29_ECTSI1.180e-1150.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig976contigL-elsbetiae_contig976:8821..9850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue6.7e-10
Seed eggNOG ortholog2880.D7FT29
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-04_002600.1
Exons2
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.3220704-CDS-L-elsbetiae_contig976:8820..91291622817038.3220704-CDS-L-elsbetiae_contig976:8820..9129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 8821..9129 -
1691684000.7727022-CDS-L-elsbetiae_contig976:8820..91291691684000.7727022-CDS-L-elsbetiae_contig976:8820..9129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 8821..9129 -
1622817038.3337834-CDS-L-elsbetiae_contig976:9766..98501622817038.3337834-CDS-L-elsbetiae_contig976:9766..9850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 9767..9850 -
1691684000.7865317-CDS-L-elsbetiae_contig976:9766..98501691684000.7865317-CDS-L-elsbetiae_contig976:9766..9850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 9767..9850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig976.18717.1prot_L-elsbetiae_contig976.18717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig976 8821..9850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig976.18717.1

>prot_L-elsbetiae_contig976.18717.1 ID=prot_L-elsbetiae_contig976.18717.1|Name=mRNA_L-elsbetiae_contig976.18717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
SWAVASDSCTSRHVPVSRLSHLLMAALGRLSTEGSTDNNQESMGGAFLLL
DASDQAITLCWDREPDVSVECVQMKAFTGAAAAAATADGQQQQGGEDEGG
SREAGVNEDDWATLSETLGSSALKKNKLAPG
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mRNA from alignment at L-elsbetiae_contig976:8821..9850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig976.18717.1 ID=mRNA_L-elsbetiae_contig976.18717.1|Name=mRNA_L-elsbetiae_contig976.18717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1030bp|location=Sequence derived from alignment at L-elsbetiae_contig976:8821..9850- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGGGCAGTTGCATCGGACAGTTGTACAAGCCGACACGTTCCTGTTTC
ACGACTCAGCCACCTACTTATGGCAGCATTAGGGGTGAGTGGTAAGAGAG
CTCGCTCTTATGTCCGTCAAAGGCCTGGTGCCTTAGACCATGGTCGGGGA
ATTGCAGCATTATTGTGCCGTGTTCCCCCCCCGTACTAACGCTCCGATAC
TCCCACGTGTCGGTCTTTCTGCAAAAGGTGCTTTTCTACTCGGCCGGAGT
TTTTCAATTCGCTACTTGTGTAGAATTCGCCAATTCATAAGGTCGGTTTT
ATCTATGTACAAGAGTAGACTTTTATCTACAAATCTATCTACGGTACATA
GATCGTTATGTGTAGTCTAGGTAGTCTAGTCTAATCCAGTATCTAGTTTT
CTTCTGTAAATATTCGAGGTTTTAGGTTTTATCCTAGTCTAGATATAGAT
TCTGGGACTCCCAGCGAACTATGTACGTACATTTCAGTAGGACGCACACA
CAGGAGATGCGTCTTGATATTAAACTCACTCAGGATATCAACGATGGGAC
CTCCCCACAAGACTTGATATATCTAGTTCTGCAATTCTGTAATGTTTTTT
TCAGTGGAATTCGTCCCTCGGTGGCCACGATTGACATATCACCATTGACC
GTGTGCGCGTTTTTCTCTCGTGCTCGTGCGCCCCCCTCCTCATCCCTGGG
TGGATCCGATAAAATCCGCAGCGGCTTTCAACGGAAGGCAGCACTGATAA
TAATCAGGAGAGCATGGGGGGGGCATTCCTCTTGCTAGACGCCTCCGATC
AGGCCATCACGCTGTGCTGGGACCGAGAGCCCGACGTCTCCGTCGAATGC
GTCCAAATGAAAGCGTTCACTGGCGCCGCCGCCGCCGCCGCCACCGCTGA
CGGACAGCAGCAGCAGGGCGGGGAAGACGAGGGCGGGAGCCGCGAAGCCG
GAGTCAACGAAGATGATTGGGCGACCTTGTCTGAAACGCTCGGGTCCAGC
GCCCTGAAGAAGAACAAGCTCGCACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig976:8821..9850-

>mRNA_L-elsbetiae_contig976.18717.1 ID=mRNA_L-elsbetiae_contig976.18717.1|Name=mRNA_L-elsbetiae_contig976.18717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig976:8821..9850- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGGGCAGTTGCATCGGACAGTTGTACAAGCCGACACGTTCCTGTTTC
ACGACTCAGCCACCTACTTATGGCAGCATTAGGGAGCTGGGCAGTTGCAT
CGGACAGTTGTACAAGCCGACACGTTCCTGTTTCACGACTCAGCCACCTA
CTTATGGCAGCATTAGGGCGGCTTTCAACGGAAGGCAGCACTGATAATAA
TCAGGAGAGCATGGGGGGGGCATTCCTCTTGCTAGACGCCTCCGATCAGG
CCATCACGCTGTGCTGGGACCGAGAGCCCGACGTCTCCGTCGAATGCGTC
CAAATGAAAGCGTTCACTGGCGCCGCCGCCGCCGCCGCCACCGCTGACGG
ACAGCAGCAGCAGGGCGGGGAAGACGAGGGCGGGAGCCGCGAAGCCGGAG
TCAACGAAGATGATTGGGCGACCTTGTCTGAAACGCTCGGGTCCAGCGCC
CTGAAGAAGAACAAGCTCGCACCCGGGCGGCTTTCAACGGAAGGCAGCAC
TGATAATAATCAGGAGAGCATGGGGGGGGCATTCCTCTTGCTAGACGCCT
CCGATCAGGCCATCACGCTGTGCTGGGACCGAGAGCCCGACGTCTCCGTC
GAATGCGTCCAAATGAAAGCGTTCACTGGCGCCGCCGCCGCCGCCGCCAC
CGCTGACGGACAGCAGCAGCAGGGCGGGGAAGACGAGGGCGGGAGCCGCG
AAGCCGGAGTCAACGAAGATGATTGGGCGACCTTGTCTGAAACGCTCGGG
TCCAGCGCCCTGAAGAAGAACAAGCTCGCACCCGGG
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