mRNA_L-elsbetiae_contig976.18716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig976.18716.1
Unique NamemRNA_L-elsbetiae_contig976.18716.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig976.18716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig976contigL-elsbetiae_contig976:1659..2338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size681
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.2887743-CDS-L-elsbetiae_contig976:1658..23361622817038.2887743-CDS-L-elsbetiae_contig976:1658..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 1659..2336 +
1691684000.7618358-CDS-L-elsbetiae_contig976:1658..23361691684000.7618358-CDS-L-elsbetiae_contig976:1658..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig976 1659..2336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig976.18716.1prot_L-elsbetiae_contig976.18716.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig976 1659..2336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig976.18716.1

>prot_L-elsbetiae_contig976.18716.1 ID=prot_L-elsbetiae_contig976.18716.1|Name=mRNA_L-elsbetiae_contig976.18716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
TAPPRATTRAWALPLVLALVVATSSTGTTAAAAAAAAASSAPSSALAAPG
QAPHRLFEAGTGGPAVRRSRPRGRRSPSPAAAAAAAVAAAASHDGSRVLS
SSRADINNRNKTEREELQRLRQQQQRPSTGWWTSTRTGTTGTLGSSTTGR
RSRSRSRVSGFVAGPATPALGQRRWRARKCGSGGSSGSSSSLAAGRPAGA
QEAGAWGAGGAGVARAGRWRQPSLPW
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mRNA from alignment at L-elsbetiae_contig976:1659..2338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig976.18716.1 ID=mRNA_L-elsbetiae_contig976.18716.1|Name=mRNA_L-elsbetiae_contig976.18716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=680bp|location=Sequence derived from alignment at L-elsbetiae_contig976:1659..2338+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGCCGCCTCGAGCGACCACACGGGCGTGGGCGCTTCCCCTCGTCCT
GGCGCTCGTCGTCGCAACCTCTTCGACAGGCACAACAGCAGCGGCAGCGG
CGGCGGCGGCGGCCTCCTCTGCCCCTTCCTCTGCGCTCGCGGCCCCGGGG
CAAGCCCCCCACCGCCTCTTCGAAGCGGGGACTGGAGGACCCGCCGTTCG
CCGTAGCCGGCCTCGCGGACGCCGATCACCTTCACCGGCGGCGGCGGCGG
CGGCAGCGGTGGCGGCGGCGGCAAGCCACGACGGTAGCCGGGTACTTTCC
AGCAGTAGGGCCGACATCAACAACAGAAACAAGACAGAGCGAGAAGAGCT
CCAACGCCTTCGGCAGCAGCAGCAGCGACCCAGCACCGGCTGGTGGACGA
GCACGAGGACGGGGACGACCGGGACGCTGGGGAGTAGTACCACCGGACGA
AGATCAAGGTCCCGCTCTCGCGTTTCTGGGTTCGTCGCGGGCCCGGCGAC
TCCAGCCCTCGGGCAGCGGCGGTGGCGGGCACGAAAGTGCGGCAGCGGCG
GCAGCAGCGGCAGCAGCAGTAGTCTCGCGGCGGGGAGGCCTGCAGGGGCG
CAGGAGGCGGGAGCATGGGGCGCGGGCGGGGCTGGCGTAGCACGAGCCGG
GAGGTGGCGGCAGCCGTCGCTGCCGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig976:1659..2338+

>mRNA_L-elsbetiae_contig976.18716.1 ID=mRNA_L-elsbetiae_contig976.18716.1|Name=mRNA_L-elsbetiae_contig976.18716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig976:1659..2338+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGCCGCCTCGAGCGACCACACGGGCGTGGGCGCTTCCCCTCGTCCT
GGCGCTCGTCGTCGCAACCTCTTCGACAGGCACAACAGCAGCGGCAGCGG
CGGCGGCGGCGGCCTCCTCTGCCCCTTCCTCTGCGCTCGCGGCCCCGGGG
CAAGCCCCCCACCGCCTCTTCGAAGCGGGGACTGGAGGACCCGCCGTTCG
CCGTAGCCGGCCTCGCGGACGCCGATCACCTTCACCGGCGGCGGCGGCGG
CGGCAGCGGTGGCGGCGGCGGCAAGCCACGACGGTAGCCGGGTACTTTCC
AGCAGTAGGGCCGACATCAACAACAGAAACAAGACAGAGCGAGAAGAGCT
CCAACGCCTTCGGCAGCAGCAGCAGCGACCCAGCACCGGCTGGTGGACGA
GCACGAGGACGGGGACGACCGGGACGCTGGGGAGTAGTACCACCGGACGA
AGATCAAGGTCCCGCTCTCGCGTTTCTGGGTTCGTCGCGGGCCCGGCGAC
TCCAGCCCTCGGGCAGCGGCGGTGGCGGGCACGAAAGTGCGGCAGCGGCG
GCAGCAGCGGCAGCAGCAGTAGTCTCGCGGCGGGGAGGCCTGCAGGGGCG
CAGGAGGCGGGAGCATGGGGCGCGGGCGGGGCTGGCGTAGCACGAGCCGG
GAGGTGGCGGCAGCCGTCGCTGCCGTGGACAGCGCCGCCTCGAGCGACCA
CACGGGCGTGGGCGCTTCCCCTCGTCCTGGCGCTCGTCGTCGCAACCTCT
TCGACAGGCACAACAGCAGCGGCAGCGGCGGCGGCGGCGGCCTCCTCTGC
CCCTTCCTCTGCGCTCGCGGCCCCGGGGCAAGCCCCCCACCGCCTCTTCG
AAGCGGGGACTGGAGGACCCGCCGTTCGCCGTAGCCGGCCTCGCGGACGC
CGATCACCTTCACCGGCGGCGGCGGCGGCGGCAGCGGTGGCGGCGGCGGC
AAGCCACGACGGTAGCCGGGTACTTTCCAGCAGTAGGGCCGACATCAACA
ACAGAAACAAGACAGAGCGAGAAGAGCTCCAACGCCTTCGGCAGCAGCAG
CAGCGACCCAGCACCGGCTGGTGGACGAGCACGAGGACGGGGACGACCGG
GACGCTGGGGAGTAGTACCACCGGACGAAGATCAAGGTCCCGCTCTCGCG
TTTCTGGGTTCGTCGCGGGCCCGGCGACTCCAGCCCTCGGGCAGCGGCGG
TGGCGGGCACGAAAGTGCGGCAGCGGCGGCAGCAGCGGCAGCAGCAGTAG
TCTCGCGGCGGGGAGGCCTGCAGGGGCGCAGGAGGCGGGAGCATGGGGCG
CGGGCGGGGCTGGCGTAGCACGAGCCGGGAGGTGGCGGCAGCCGTCGCTG
CCGTGG
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