mRNA_L-elsbetiae_contig9751.18713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9751.18713.1
Unique NamemRNA_L-elsbetiae_contig9751.18713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9751.18713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9751contigL-elsbetiae_contig9751:1114..1809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size696
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.0532684-CDS-L-elsbetiae_contig9751:1113..14881622817038.0532684-CDS-L-elsbetiae_contig9751:1113..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9751 1114..1488 +
1691684000.5623872-CDS-L-elsbetiae_contig9751:1113..14881691684000.5623872-CDS-L-elsbetiae_contig9751:1113..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9751 1114..1488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.0658476-UTR-L-elsbetiae_contig9751:1488..18091622817038.0658476-UTR-L-elsbetiae_contig9751:1488..1809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9751 1489..1809 +
1691684000.5742166-UTR-L-elsbetiae_contig9751:1488..18091691684000.5742166-UTR-L-elsbetiae_contig9751:1488..1809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9751 1489..1809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9751.18713.1prot_L-elsbetiae_contig9751.18713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9751 1114..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9751.18713.1

>prot_L-elsbetiae_contig9751.18713.1 ID=prot_L-elsbetiae_contig9751.18713.1|Name=mRNA_L-elsbetiae_contig9751.18713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
ERATSPSRHPSDTSRNEQRRRARQIPQRQAGTTCCVSYRRSHLQKTEVDD
HDNESGTNPGYSSLSTSNKQTVRGSTPGASSSNSPCSGCRCVRIDHSQTV
TSATPLDPRCAFLNCNCTNRYIHK*
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mRNA from alignment at L-elsbetiae_contig9751:1114..1809+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9751.18713.1 ID=mRNA_L-elsbetiae_contig9751.18713.1|Name=mRNA_L-elsbetiae_contig9751.18713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig9751:1114..1809+ (Laminarionema elsbetiae ELsaHSoW15)
GAACGTGCGACCTCCCCCTCACGGCATCCGAGTGACACCTCCCGAAATGA
GCAACGCCGGCGCGCGCGCCAGATCCCCCAACGACAGGCGGGCACCACCT
GCTGTGTGTCGTATCGACGTAGTCATCTCCAAAAAACAGAGGTAGACGAC
CACGACAACGAATCCGGAACCAACCCCGGATACTCCTCCCTTTCAACTTC
AAACAAACAGACGGTGCGTGGTTCTACCCCAGGGGCCTCCAGCTCCAACT
CTCCGTGCAGCGGTTGCCGCTGCGTTCGTATAGACCACTCACAGACAGTC
ACCTCAGCCACGCCACTTGATCCAAGGTGCGCATTTCTTAATTGTAATTG
TACCAACAGATACATCCATAAATAAGAACAACGAAACTGCTCAGACCACC
CTTCCACGGCACGACTTTCGAAACCGTTCATATGTTCGTCCGTACCATGG
AGCGGAACTACTGCAATCGACACGTAAACGACTCACAGGAAACAAAATGT
AAAACGACTCACAGGAAACAAAATGGGTCAACCTACCAACCGCACAGCAC
CACCCCCCCACGCCGGAAACATGGTTGAGCCAGCCGCCTTTCTTCCCGTG
GTGTGATTTTCGGGCTGCCGATCATCGGTCGACTTTGATCCCTCGCTGTC
CCGTCCTTAACGATAACCCCACTTGGTCGGGGGGAAAGGTGACGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9751:1114..1809+

>mRNA_L-elsbetiae_contig9751.18713.1 ID=mRNA_L-elsbetiae_contig9751.18713.1|Name=mRNA_L-elsbetiae_contig9751.18713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig9751:1114..1809+ (Laminarionema elsbetiae ELsaHSoW15)
GAACGTGCGACCTCCCCCTCACGGCATCCGAGTGACACCTCCCGAAATGA
GCAACGCCGGCGCGCGCGCCAGATCCCCCAACGACAGGCGGGCACCACCT
GCTGTGTGTCGTATCGACGTAGTCATCTCCAAAAAACAGAGGTAGACGAC
CACGACAACGAATCCGGAACCAACCCCGGATACTCCTCCCTTTCAACTTC
AAACAAACAGACGGTGCGTGGTTCTACCCCAGGGGCCTCCAGCTCCAACT
CTCCGTGCAGCGGTTGCCGCTGCGTTCGTATAGACCACTCACAGACAGTC
ACCTCAGCCACGCCACTTGATCCAAGGTGCGCATTTCTTAATTGTAATTG
TACCAACAGATACATCCATAAATAAGAACGTGCGACCTCCCCCTCACGGC
ATCCGAGTGACACCTCCCGAAATGAGCAACGCCGGCGCGCGCGCCAGATC
CCCCAACGACAGGCGGGCACCACCTGCTGTGTGTCGTATCGACGTAGTCA
TCTCCAAAAAACAGAGGTAGACGACCACGACAACGAATCCGGAACCAACC
CCGGATACTCCTCCCTTTCAACTTCAAACAAACAGACGGTGCGTGGTTCT
ACCCCAGGGGCCTCCAGCTCCAACTCTCCGTGCAGCGGTTGCCGCTGCGT
TCGTATAGACCACTCACAGACAGTCACCTCAGCCACGCCACTTGATCCAA
GGTGCGCATTTCTTAATTGTAATTGTACCAACAGATACATCCATAAATAA
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