mRNA_L-elsbetiae_contig9747.18711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9747.18711.1
Unique NamemRNA_L-elsbetiae_contig9747.18711.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9747.18711.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.460e-5
Identity = 71/124 (57.26%), Postives = 78/124 (62.90%), Query Frame = -2 
Query:  120 SPLHWVGETMEGSINWLCGNNG-------NGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTGSAGSEQDTAVAAVVARSAATSPARRAETGALPPLGAGIPQ-QGQAPARSRLWSRTFG 467
            SPLHWVGETMEGSINWL GNNG        G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           +    +      +  A  A + ALPPLGAGIP  Q +    SR+WSRT+G
Sbjct:  157 SPLHWVGETMEGSINWLRGNNGCRAAAAERGSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPTTGISPLGFGSRAAAAATSSALPPLGAGIPHAQQERQQSSRVWSRTYG 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9747.18711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K079_9PHAE3.460e-557.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9747contigL-elsbetiae_contig9747:2039..2713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9747.18711.1prot_L-elsbetiae_contig9747.18711.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9747 2213..2608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.8009622-UTR-L-elsbetiae_contig9747:2038..22121622817037.8009622-UTR-L-elsbetiae_contig9747:2038..2212Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9747 2039..2212 +
1691684000.3688183-UTR-L-elsbetiae_contig9747:2038..22121691684000.3688183-UTR-L-elsbetiae_contig9747:2038..2212Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9747 2039..2212 +
1622817037.8253865-UTR-L-elsbetiae_contig9747:2608..27131622817037.8253865-UTR-L-elsbetiae_contig9747:2608..2713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9747 2609..2713 +
1691684000.3864095-UTR-L-elsbetiae_contig9747:2608..27131691684000.3864095-UTR-L-elsbetiae_contig9747:2608..2713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9747 2609..2713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.8138814-CDS-L-elsbetiae_contig9747:2212..26081622817037.8138814-CDS-L-elsbetiae_contig9747:2212..2608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9747 2213..2608 +
1691684000.3778832-CDS-L-elsbetiae_contig9747:2212..26081691684000.3778832-CDS-L-elsbetiae_contig9747:2212..2608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9747 2213..2608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9747.18711.1

>prot_L-elsbetiae_contig9747.18711.1 ID=prot_L-elsbetiae_contig9747.18711.1|Name=mRNA_L-elsbetiae_contig9747.18711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MPAPRGGSAPVSALRAGDVAALLATTAATAVSCSLPAEPVGKPPPVLLLL
LLPPTAEPRPLLCSAAAAAAAVLRPLPLLPHNQLMEPSMVSPTQCRGDAG
APPAEDAPLMVVAVFARNERIRDSCPPAGVS*
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mRNA from alignment at L-elsbetiae_contig9747:2039..2713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9747.18711.1 ID=mRNA_L-elsbetiae_contig9747.18711.1|Name=mRNA_L-elsbetiae_contig9747.18711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=675bp|location=Sequence derived from alignment at L-elsbetiae_contig9747:2039..2713+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTCATCTGTCCCGCCCTCATCGTCCCCGTCGACGCTGCTGCTGTCATC
GCCGTCGCGAGCGTCCGTCGCAGATCCCTCCGCGAGCGGTGGTTGCTGCA
CGCCGGTCCCCGCCCCGCGGCCGAACGTCCTCGACCACAACCTCGATCTC
GCCGGCGCTTGCCCCTGCTGCGGGATGCCCGCGCCGAGGGGGGGCAGTGC
ACCGGTTTCTGCCCTTCGAGCCGGGGACGTTGCCGCGCTTCTCGCCACGA
CGGCTGCTACCGCGGTGTCTTGTTCACTGCCGGCGGAACCCGTCGGCAAG
CCTCCCCCGGTGCTCCTGCTTCTCCTTCTGCCGCCTACTGCTGAACCCCG
TCCGTTGCTATGCTCTGCTGCTGCTGCTGCTGCCGCGGTCCTTCGTCCGT
TGCCGTTGTTGCCGCACAACCAGTTGATGGAGCCTTCCATGGTCTCCCCA
ACCCAGTGCAGGGGTGATGCCGGTGCTCCTCCTGCAGAAGACGCGCCGCT
TATGGTCGTTGCCGTATTCGCAAGGAACGAAAGAATCAGGGATTCCTGCC
CGCCAGCAGGAGTATCCTGAACGCAGTCGTTGCTGCTGACGGGGGCACCA
TCGCCGGCACCAGCACCATTATCGATCGTCATGACCCCTGCCGCCCCAGC
TGCAGCTGTTGTCGCTATCTCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9747:2039..2713+

>mRNA_L-elsbetiae_contig9747.18711.1 ID=mRNA_L-elsbetiae_contig9747.18711.1|Name=mRNA_L-elsbetiae_contig9747.18711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig9747:2039..2713+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCGCGCCGAGGGGGGGCAGTGCACCGGTTTCTGCCCTTCGAGCCGG
GGACGTTGCCGCGCTTCTCGCCACGACGGCTGCTACCGCGGTGTCTTGTT
CACTGCCGGCGGAACCCGTCGGCAAGCCTCCCCCGGTGCTCCTGCTTCTC
CTTCTGCCGCCTACTGCTGAACCCCGTCCGTTGCTATGCTCTGCTGCTGC
TGCTGCTGCCGCGGTCCTTCGTCCGTTGCCGTTGTTGCCGCACAACCAGT
TGATGGAGCCTTCCATGGTCTCCCCAACCCAGTGCAGGGGTGATGCCGGT
GCTCCTCCTGCAGAAGACGCGCCGCTTATGGTCGTTGCCGTATTCGCAAG
GAACGAAAGAATCAGGGATTCCTGCCCGCCAGCAGGAGTATCCTGAATGC
CCGCGCCGAGGGGGGGCAGTGCACCGGTTTCTGCCCTTCGAGCCGGGGAC
GTTGCCGCGCTTCTCGCCACGACGGCTGCTACCGCGGTGTCTTGTTCACT
GCCGGCGGAACCCGTCGGCAAGCCTCCCCCGGTGCTCCTGCTTCTCCTTC
TGCCGCCTACTGCTGAACCCCGTCCGTTGCTATGCTCTGCTGCTGCTGCT
GCTGCCGCGGTCCTTCGTCCGTTGCCGTTGTTGCCGCACAACCAGTTGAT
GGAGCCTTCCATGGTCTCCCCAACCCAGTGCAGGGGTGATGCCGGTGCTC
CTCCTGCAGAAGACGCGCCGCTTATGGTCGTTGCCGTATTCGCAAGGAAC
GAAAGAATCAGGGATTCCTGCCCGCCAGCAGGAGTATCCTGA
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