mRNA_L-elsbetiae_contig9745.18710.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9745.18710.1
Unique NamemRNA_L-elsbetiae_contig9745.18710.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 4.300e-85
Identity = 139/198 (70.20%), Postives = 155/198 (78.28%), Query Frame = 3 
Query:  168 MNM-AHANGNG--------QHAGEGCAGSERDRRAAINMLPNADLSVHTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLPPHFLRHRPDGGSXXXXXXXRFEKVPI 734
            MN+  H+NG G        Q  G   AGSE+DRRAAINMLPNADLS HTCDSCSKDITGLC+IRCEECK        QEVDLCAACFF G EPLGHKKTH YRVMDKL K IF+E+WTAAEELSL DQ ++MGLGAW+EISDSKLFYRRHS++ELNARYLDTYLSQ+GSVLPP++L+HRPDG           +KVPI
Sbjct:    1 MNINVHSNGQGAMDVNVGPQGGGGERAGSEKDRRAAINMLPNADLSNHTCDSCSKDITGLCYIRCEECK--------QEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLMDQVKKMGLGAWEEISDSKLFYRRHSSSELNARYLDTYLSQYGSVLPPYYLKHRPDGSGA--------DKVPI 182
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.840e-55
Identity = 99/161 (61.49%), Postives = 113/161 (70.19%), Query Frame = 3 
Query:  255 MLPNAD-LSVHTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLPPHFLRHRPDGGSXXXXXXXRFEKVPI 734
            MLP AD     TCDSC+KDI  LC+IRC ECK          VDLC +CFF G+EP  HKKTH YRVMDKLHK I+SE W+A EEL+LAD TR+ GLGAW+EI+D K+FYRR S  ELNARYLDTYL+ + SVLPPH+LR R DG           EKVPI
Sbjct:    1 MLPQADPTDGMTCDSCNKDIKFLCYIRCAECKDV--------VDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWSAVEELALADLTRKRGLGAWEEIADLKMFYRRKSEKELNARYLDTYLATYDSVLPPHYLREREDG---------TVEKVPI 144
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A4D8XTF3_9ALVE (Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XTF3_9ALVE)

HSP 1 Score: 88.2 bits (217), Expect = 1.450e-16
Identity = 51/126 (40.48%), Postives = 60/126 (47.62%), Query Frame = 3 
Query:  222 GSERDRRAAINMLPNADL------------SVHTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEIS 563
            GS     AA   +P+A               V  CD C +DIT    IRC EC         QE DLC  CF  G E   HK+TH YRVM+KL  S+ S +WTA EEL L       GLG W E++
Sbjct:   11 GSPEPAAAAAKEVPSASAVPAAVAPNTIGAKVFHCDYCHRDITNQVRIRCAEC---------QEFDLCLDCFSVGAEISSHKRTHSYRVMEKLDFSVLSSDWTAHEELMLLQALDLYGLGNWVEVA 127
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A3P3Y5Z7_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y5Z7_PLABS)

HSP 1 Score: 82.8 bits (203), Expect = 2.110e-14
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3 
Query:  282 HTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLG-----HKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            H CD C KDI+    ++C EC          +  LC  CF  G E L      H+KTH YRV+D++  SIF E+WTA +EL L +   R G+G W ++++  +  +  + A++   Y   YL+     LP
Sbjct:  886 HLCDYCRKDISQSIRVKCCECT---------DFILCVYCFASGAELLVDDQNMHRKTHSYRVIDRVTASIFDEDWTADDELMLLEGIERYGMGNWQDVANH-IGAKSKNKAKVEQHYSAVYLNSDTKPLP 1005
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A1Y1W9F9_9FUNG (Transcriptional adapter 2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9F9_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 7.220e-14
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 3 
Query:  279 VHTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVM------DKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            ++ CD+C  +++    IRC EC+        +E DLCAACF +G E   HKKTH YR++      ++    IF+E+W+A EEL L D  R+ G+G W + ++        +  E    Y D Y++     +P
Sbjct:    9 MYHCDNCQVNVSDSVRIRCHECEKF------EEFDLCAACFAKGIEIGRHKKTHSYRIVRAWQLIEQHRFPIFTEDWSADEELLLIDGLRQFGMGNWRDAAEH---VGTKTKEECEQHYKDVYVASEDWPMP 131
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A2G5BFS6_COERN (Transcriptional adapter 2 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BFS6_COERN)

HSP 1 Score: 77.8 bits (190), Expect = 8.000e-13
Identity = 42/123 (34.15%), Postives = 58/123 (47.15%), Query Frame = 3 
Query:  288 CDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            CD+C  ++T    I C EC          E DLC  CF +G E   HK  H YRV+ +    IF+E+W+A EEL L D  R+ G+G W + ++        +  E    YL  Y+      LP
Sbjct:   24 CDNCQANVTDGVRISCNECP---------EFDLCTTCFSRGIELGSHKNDHSYRVVTRHRFPIFTEDWSADEELLLIDGLRQFGMGNWKDAAEH---VGTKTKEECEQHYLSVYVGADSWPLP 134
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: A0A4P9ZPH0_9FUNG (Transcriptional adapter 2 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPH0_9FUNG)

HSP 1 Score: 77.4 bits (189), Expect = 1.060e-12
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 3 
Query:  282 HTCDSCSKDITGLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            +TCD C  +++G   IRC EC      PD    D C  CF QG E   HK  H+Y+V+      IF+E+W+A EEL L +  ++ G+G W +I++     R  +  E    Y   YL      LP
Sbjct:   12 YTCDYCQSNLSGTVRIRCAEC------PD---FDTCVTCFSQGIELGPHKNNHKYQVVTPNFFPIFTEDWSADEELLLIEGIQQFGMGNWMDIAEH---VRTKNKDECEKHYQIVYLESPQWPLP 124
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: Q4UG81_THEAN (Transcriptional adaptor2-related protein, putative n=1 Tax=Theileria annulata TaxID=5874 RepID=Q4UG81_THEAN)

HSP 1 Score: 66.6 bits (161), Expect = 5.440e-9
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3 
Query:  288 CDSCSKDIT-GLCFIRCEECKATKERPDTQEVDLC--AACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISD--SKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            C+ C++ ++ G C IRC EC          + DLC   AC  + TEP  H  TH Y  +      +FSE WTA EEL L +   + G G W ++++  +K+  ++ + AE    Y D Y+S   S  P
Sbjct:   82 CNYCNQSLSVGGCRIRCAECL---------DYDLCISCACNHKCTEP--HNLTHNYVPIGPNSFELFSEGWTADEELILLEGIGKYGFGNWKQVAEMVNKVNSKQKTPAECENHYYDVYISTGSSPHP 198
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: L0B044_THEEQ (Uncharacterized protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0B044_THEEQ)

HSP 1 Score: 65.9 bits (159), Expect = 9.810e-9
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 3 
Query:  288 CDSCSKDIT-GLCFIRCEECKATKERPDTQEVDLC--AACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISD--SKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            C+ C+K +  G C IRC EC          + DLC   AC F  TE   H+ +H+Y  +   +  +FSE WTA EEL L +   + G G W ++++  + +  ++ S  +  + Y D Y+S   S  P
Sbjct:   61 CNYCNKSLPLGSCRIRCAECS---------DYDLCIRCACNFMHTET--HELSHKYIPIGPNNFELFSEGWTADEELLLLEGISKFGFGNWKQVAEMVNTVSAKQKSPYDCESHYNDAYISSVTSPYP 177
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BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Match: Q4N9I6_THEPA (Uncharacterized protein n=1 Tax=Theileria parva TaxID=5875 RepID=Q4N9I6_THEPA)

HSP 1 Score: 64.7 bits (156), Expect = 2.440e-8
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3 
Query:  288 CDSCSKDIT-GLCFIRCEECKATKERPDTQEVDLC--AACFFQGTEPLGHKKTHRYRVMDKLHKSIFSEEWTAAEELSLADQTRRMGLGAWDEISD--SKLFYRRHSAAELNARYLDTYLSQHGSVLP 656
            C+ C++ ++ G C IRC EC          + DLC   AC  + TEP  H  TH Y  +      +FSE WTA EEL L +   + G G W ++++  +K+  ++ +  E    Y D Y+S   S  P
Sbjct:   80 CNYCNQSLSVGGCRIRCAECL---------DYDLCISCACNHKCTEP--HNLTHNYVPIGPNSFELFSEGWTADEELILLEGIGKYGFGNWKQVAEMVNKVNSKQKTPGECENHYYDVYISSGTSPHP 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9745.18710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JL08_9PHAE4.300e-8570.20Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRV7_ECTSI1.840e-5561.49Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D8XTF3_9ALVE1.450e-1640.48Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2... [more]
A0A3P3Y5Z7_PLABS2.110e-1434.62Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A1Y1W9F9_9FUNG7.220e-1433.33Transcriptional adapter 2 n=1 Tax=Linderina pennis... [more]
A0A2G5BFS6_COERN8.000e-1334.15Transcriptional adapter 2 n=1 Tax=Coemansia revers... [more]
A0A4P9ZPH0_9FUNG1.060e-1235.20Transcriptional adapter 2 n=1 Tax=Dimargaris crist... [more]
Q4UG81_THEAN5.440e-933.59Transcriptional adaptor2-related protein, putative... [more]
L0B044_THEEQ9.810e-932.03Uncharacterized protein n=1 Tax=Theileria equi str... [more]
Q4N9I6_THEPA2.440e-832.81Uncharacterized protein n=1 Tax=Theileria parva Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9745contigL-elsbetiae_contig9745:2149..6328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue9.9e-63
Seed eggNOG ortholog2880.D7G4A5
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Exons4
Model size735
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9745.18710.1prot_L-elsbetiae_contig9745.18710.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9745 2149..6164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.726243-CDS-L-elsbetiae_contig9745:2148..23131622817037.726243-CDS-L-elsbetiae_contig9745:2148..2313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 2149..2313 -
1691684000.3064017-CDS-L-elsbetiae_contig9745:2148..23131691684000.3064017-CDS-L-elsbetiae_contig9745:2148..2313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 2149..2313 -
1622817037.7376015-CDS-L-elsbetiae_contig9745:3458..35441622817037.7376015-CDS-L-elsbetiae_contig9745:3458..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 3459..3544 -
1691684000.3202257-CDS-L-elsbetiae_contig9745:3458..35441691684000.3202257-CDS-L-elsbetiae_contig9745:3458..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 3459..3544 -
1622817037.7503881-CDS-L-elsbetiae_contig9745:4026..41921622817037.7503881-CDS-L-elsbetiae_contig9745:4026..4192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 4027..4192 -
1691684000.3297443-CDS-L-elsbetiae_contig9745:4026..41921691684000.3297443-CDS-L-elsbetiae_contig9745:4026..4192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 4027..4192 -
1622817037.7604067-CDS-L-elsbetiae_contig9745:6011..61641622817037.7604067-CDS-L-elsbetiae_contig9745:6011..6164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 6012..6164 -
1691684000.342942-CDS-L-elsbetiae_contig9745:6011..61641691684000.342942-CDS-L-elsbetiae_contig9745:6011..6164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9745 6012..6164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.77021-UTR-L-elsbetiae_contig9745:6164..63281622817037.77021-UTR-L-elsbetiae_contig9745:6164..6328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9745 6165..6328 -
1691684000.3575332-UTR-L-elsbetiae_contig9745:6164..63281691684000.3575332-UTR-L-elsbetiae_contig9745:6164..6328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9745 6165..6328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9745.18710.1

>prot_L-elsbetiae_contig9745.18710.1 ID=prot_L-elsbetiae_contig9745.18710.1|Name=mRNA_L-elsbetiae_contig9745.18710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MMNMAHANGNGQHAGEGCAGSERDRRAAINMLPNADLSVHTCDSCSKDIT
GLCFIRCEECKATKERPDTQEVDLCAACFFQGTEPLGHKKTHRYRVMDKL
HKSIFSEEWTAAEELSLADQTRRMGLGAWDEISDSKLFYRRHSAAELNAR
YLDTYLSQHGSVLPPHFLRHRPDGGSGGGGGGGRFEKVPI
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mRNA from alignment at L-elsbetiae_contig9745:2149..6328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9745.18710.1 ID=mRNA_L-elsbetiae_contig9745.18710.1|Name=mRNA_L-elsbetiae_contig9745.18710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4180bp|location=Sequence derived from alignment at L-elsbetiae_contig9745:2149..6328- (Laminarionema elsbetiae ELsaHSoW15)
TGTACCACCGCGAGCGTCAGAGGTATCCTTGCCGCATCAAGTCTACGGAT
CCGACTTGTTAGCCCGGTGACTGGCCCCAGATTAGCGCACAGTTTACAGC
ACGCCTCTACGGCAAGAGGTTATCTAGGTCGAGCCGCCGAGGGAGCCGGA
AGGAAACACCAGCGATGATGAACATGGCTCATGCGAATGGCAATGGACAG
CACGCCGGGGAGGGGTGCGCCGGGAGCGAGAGGGACAGGAGAGCGGCGAT
CAACATGCTGCCGAACGCTGATCTCTCGGTCCATACCTGTGACTCGTGCA
GCAAGGACATAACTGGGGTGAGAGTTGAGAGAGAGAGAGAGAGTCTCTCT
TGTCAAAACCCACGCCACGCCTGTCTGTTCCTCGTACGCGAGGAGTATGC
ACGATGTGCACTAGCGCTTGACAGGGATGCATCCATGTGGAGGGCGGGGA
TTCCAGGCGTGCTGCTAGGAGATGTGAAGATGGTTTGTCAATAAGTAAAA
AATGAAGAAACCCTCGTCGGATCGCCCCCTCCTTTCACACCAAGACTACC
GCCGTAAGTGACACAAGATACCACCCCCCCCCCTGGACAGATTTTCAAAG
ATTTTCTAAGCTGGATTCCTCCCAGTCGTGGGCTGTCCGAAAATATGTCG
TTACGGAGAGTAATGGAGCTCTAAAAAGCCGGTCCAGGGGGTTTAACCCC
TGAGCTGCATTTCTCAGTAACGAGCAGGGTGTGCACCAAGCGACATATTT
TCGGACAGCCCTCGACTGGATCTTTCCAACGCCACCCCCTTTCGGCGCTG
GCACTCTTCTTGCTGGGAGGGATCGAGCTTTGAAAACCATTCCGGGGGGT
TTGGTATCTGGTGTCACCTACATGCACCCGGTGTATGCATTACTGACCTC
TAAGTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGC
CAAAATAAATGGGAAGGAGACACACACACACACACACACACACACACACA
CACACACGATGCCTTCACCAGTAGTAATCCCACCCTAAACTGAACCCGCA
TCTTGACTTTTTTTTTTTAAGTCAAACCATGCGATGTGTTCCCATCACAG
AAGTAGATGACAACATGACGACATCACGGTGGGTTTCTCCTCGGAATACA
TTTGTTGGTTGGCCTGGCAGGGCTTTACAGGGGAGATGCTGAACTCTTCG
GACACCTTACATTTTGGGTGTTTTTCTGCTCGGCCGGACCAGTATTACGT
CACTATATGGAATACCGGTTGAACCCCACGAATTACCCTTCTCAATGCGG
GTCAGGTTCCGTTTATGATCAACTGATTTATCTTCTCAAAAAGAGGGCAC
ATACCGTAGGTGACACAAGATACCACACCCCTTGGACGGGTTTTCAAAGC
TCGATGATTCCTCCCCAGCAAGAAGAATGCCAGTGCCGAAAGGGGGTGGG
TGGCGTTGGAAATATCCAGTCGAGGGCTGCCCGAAACTGTGTCGTTTGAT
GCCGGCACCCTCTTCGCTACGCAGCAATGGAGCTCTAAAAAAGTCGATCC
AGGGGGTTTGGTATCTTGTGTCACCTACAGTATACCGAACGACGAGTTTT
TGGACGGCCATAGACGAGACCTTTCCAACAACGCCACACCCCTTTTTCGG
CGCTGAAAAGTATTCTTTTTTGCTGTGGAAAATAATAAAACAACCTACCC
CCCCATTTCGAGTATCATCGCACTGACTGCCTCGGCACATCTCCGGAACA
GTTGTATGGTTGAGCGATGGCTTGTTCAGTCGGATGTAGCTTTGGAAATC
ATTTCATTTCAGGGGGGGGGGGCAGTAAGTAGGCAGCGCGCACGATGTGG
CCTTTTCTTTAGTTTTACCCATATGAACATACGATGGAGTATATTATTTT
TCGTGTACCTTTTCTTGGGTATAAGTTATAGCCTGTGACCACGGGAATTG
ACCGCGTCAAGTGTTGGATTAGTACGGACATTGAGAGGTACTGGATGGAG
AGATCGGAGCGGTTTTTAATGTGAAGACAACATATGTACATGCATATTAA
TTTTACCATTGTGACGCCGCAAAACCGCACACGGCGGACGACGCGCGGCA
CGCCACTGTTTTCCACCCCGAACACTCGGAGACCAGCTGTGCTTCATCCG
GTGCGAGGAGTGCAAGGCCACCAAGGAGCGGCCGGACACCCAGGAGGTCG
ACCTCTGCGCCGCCTGCTTTTTCCAGGGCACGGAGCCCCTGGGGCACAAG
AAGACCCACCGCTACCGTGTCATGGACAAGCTCCACAAGTCAATATTCTC
CGGTGAGTCAGTCCCCCACCTTAGCACTGCTGCTAGTGTACCCCCCCCCC
CCCTGACCTGCCTCTCGTTCAGTGCACGCTACATAAGGACCAGGTCCAGT
GACGACGAATGGGCAATCAACAATTTTGGTGCGCCCCCACGGGACCCCCC
CCTCCCCCGCCGCTTACTCTGGTATCCCCGCCCCTGACTTTGAAACCGAA
AACACGCCTACATATATGAACTCTGAAGCACCCGAGGATTTATCTACGGT
CGGCAGATTGCGGTCAGCACTTTGTCCAAAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGTTGCTGCACTTTCAACCCGCTTCCGTCTAT
AGCCCGCGCCTGTTTTGGTGTGCTCAGGTATCCATCACTCTTTTCTCCGT
CGTCCGTTGTCGCGTTTTTGTGAATGTTTGTCGTTGTCGTTGTCGTCGTC
GTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGCAGAGGAGTGGACGGCGGC
GGAAGAGCTGTCCCTGGCGGACCAGACGAGGAGGATGGGCCTGGGGGCGT
GGGACGAAATCAGCGACTCGGTGAGACAGAGATAGACAGATATATATATA
TATATATGTATAATATATATATATATAGAGAGAGAGAGAGAGAGAGCATC
ACGCATGGCATTGCATGACATTCATCATTCATTGCCTGAGGGGGGGGGGG
GGGGGGGGGGCTCCGCAGCGCAGCCGCGGCGAAAAACCGATCGCCTGTTG
TCGCGTTTTCGTATATATACATAGCAAGCATGCACTTAAGGCTCTCGTGT
CATGCGTTTGTTGGACCGTGCCGCCGGGAGAAGAGAGGGCCCGTGCGCGC
GCGCCCGTGGGGTGCGATGAGGAGTGCCACGGTGCCGAGCGGGGGGGGCT
ACATAGGACGTGGTGCGGGCCTAGTGTGGGTTAAGTGCTCCGTGAATGAA
TCGATCCTCGGGGTCGTTTTTTTTTTTCTTTTTCTTTTACTTTCAAGTAG
GGGCTTTCTCGCACAATACACAGCCCTGCTGTAACACATGTACTTGTATT
GTATGTAACAGCTTTGTGTTTTATCGCTTCGGAGTTTCGCCTCCTCTTTC
TTCTGAGATGGATGGGAAAGAGGGGCGAAGAGGTAGGCTCGGCGTGAGCG
AGACGCGAAAGAACCCACCACCGTTTCCGCTGTGCACTAACATAGCTTTC
CAGGGGGCATTTAGTTGTCGACCAGTCCCGCTCCGGATGCCCGGTGCCCC
CGGCTTGCTGTGCAGAAAACTGGTCTTGTCGGCGTTTGGGGGGCGGGGGA
GTTTGAACAGCTTGCTGTGCATAAACTGTTTGTGTTTGCGTCTGGTCCTG
GGCAGAGAGGAGAAGGTTTATGTACACGAAGTTCTCAATCGGAGGAAGCG
TTTTCCGCGAGAGAACCTCGCAACGTGCATGATCGCCGCAGCCCCCGTGT
CGTACCTGCCCGTCCATCATCCCCGGCCCTTTCTCGCTTCCGCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCACNNNNNNNNAACCTCGGAACGGGTATTATCGCCGCGCCGCCCG
TGTCGTACCTCCCCCTCCATCACCCCCGGCCCTTTCTCCCTTCCCCCCCC
CCCCCCCCCCCTTCTCTCTCCCCGTGAATGCGTGAATGCACGTCACAAAT
CGCACCACAAAACAGAAGCTGTTCTACCGCCGGCACTCGGCGGCGGAGCT
GAACGCCCGCTACCTGGACACCTACCTGTCCCAGCACGGCTCCGTGCTCC
CGCCGCACTTCCTCAGGCACCGCCCGGACGGCGGCAGCGGCGGCGGCGGC
GGCGGCGGGCGGTTCGAGAAGGTGCCCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9745:2149..6328-

>mRNA_L-elsbetiae_contig9745.18710.1 ID=mRNA_L-elsbetiae_contig9745.18710.1|Name=mRNA_L-elsbetiae_contig9745.18710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig9745:2149..6328- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAACATGGCTCATGCGAATGGCAATGGACAGCACGCCGGGGAGGG
GTGCGCCGGGAGCGAGAGGGACAGGAGAGCGGCGATCAACATGCTGCCGA
ACGCTGATCTCTCGGTCCATACCTGTGACTCGTGCAGCAAGGACATAACT
GGGATGATGAACATGGCTCATGCGAATGGCAATGGACAGCACGCCGGGGA
GGGGTGCGCCGGGAGCGAGAGGGACAGGAGAGCGGCGATCAACATGCTGC
CGAACGCTGATCTCTCGGTCCATACCTGTGACTCGTGCAGCAAGGACATA
ACTGGGCTGTGCTTCATCCGGTGCGAGGAGTGCAAGGCCACCAAGGAGCG
GCCGGACACCCAGGAGGTCGACCTCTGCGCCGCCTGCTTTTTCCAGGGCA
CGGAGCCCCTGGGGCACAAGAAGACCCACCGCTACCGTGTCATGGACAAG
CTCCACAAGTCAATATTCTCCGCTGTGCTTCATCCGGTGCGAGGAGTGCA
AGGCCACCAAGGAGCGGCCGGACACCCAGGAGGTCGACCTCTGCGCCGCC
TGCTTTTTCCAGGGCACGGAGCCCCTGGGGCACAAGAAGACCCACCGCTA
CCGTGTCATGGACAAGCTCCACAAGTCAATATTCTCCGAGGAGTGGACGG
CGGCGGAAGAGCTGTCCCTGGCGGACCAGACGAGGAGGATGGGCCTGGGG
GCGTGGGACGAAATCAGCGACTCGAGGAGTGGACGGCGGCGGAAGAGCTG
TCCCTGGCGGACCAGACGAGGAGGATGGGCCTGGGGGCGTGGGACGAAAT
CAGCGACTCGAAGCTGTTCTACCGCCGGCACTCGGCGGCGGAGCTGAACG
CCCGCTACCTGGACACCTACCTGTCCCAGCACGGCTCCGTGCTCCCGCCG
CACTTCCTCAGGCACCGCCCGGACGGCGGCAGCGGCGGCGGCGGCGGCGG
CGGGCGGTTCGAGAAGGTGCCCATCAAGCTGTTCTACCGCCGGCACTCGG
CGGCGGAGCTGAACGCCCGCTACCTGGACACCTACCTGTCCCAGCACGGC
TCCGTGCTCCCGCCGCACTTCCTCAGGCACCGCCCGGACGGCGGCAGCGG
CGGCGGCGGCGGCGGCGGGCGGTTCGAGAAGGTGCCCATC
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