prot_L-elsbetiae_contig9705.18679.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9705.18679.1
Unique Nameprot_L-elsbetiae_contig9705.18679.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length600
Homology
BLAST of mRNA_L-elsbetiae_contig9705.18679.1 vs. uniprot
Match: A0A6H5J9W3_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W3_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 7.230e-109
Identity = 303/611 (49.59%), Postives = 337/611 (55.16%), Query Frame = 0
Query:    2 PSEGCPHHHHTVPGPTIPFGMVGVELPARYGGRLGGFMVAGXXXXXXXXXXXXXXXXXXXXXXXXXXSMAGHGRLIAPGSLHHGGGSTLQNAQPACSMGGLFWPTLYDLTIAKRRQRERLRDCFRRFSRGQRLDVRDPSGVWMGAEVVWAPKRDRATSAAVXXXXXXXXXXGGGVAYVGGQL-------------EILG------------------------GADPGIPEWRRLLQLGIVGGIMNIANNQGVVANAG-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSNGNGVGANQLVSMVALGDSCDWVTTGAVDIAQA----HLASAVTAAADSRRFSAPSGRAGASAASFSPPAASA-------------------------------------------GGNGMAAPASTPEVAPAGNSRKSILVHYEGHKSKYDEWINVQSPRLAPFRSRTTRPLSVTMQSVEKVVNGASVSCPRGVPAPDCVEISMSCPWISHCAGGGVVTYRLPRSTILGAVLADFCHLAGISLWRSTVQRARLHMAADIRHGACAAEELDDRRTLEYLDITSGSVLLVCVAPAAKDLLPAGRQCVPP 527
            P EG P+HHHTV GP IP+GM  VELPAR GG     + A XXXXXXXXXXXXXX                             G +TLQNAQPAC MGGLFWPTLYDLT AKRRQRERLR+CFR+FSRGQRLDV DPSGVWMGAEV+WAP      +  V           GG    GG               E+ G                        G + G+PEWRR+LQLG++             A++G AA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        WVTT A   +Q+                              A+++P A +A                                           G  G           P G++RK + VHYEGHK KYDEWI+VQS RLAPFRSRTTRPLSVTMQ VE+VV GASVS  RGVPAPDCVEI MSCPW+SHCAGGGVVTYRLPRST L  VLADFCHLA ISL R+TV+RARL +A+D R G C  EELDD RTLEYL++TSGSVLLVCVAP  KDL PAG  CV P
Sbjct:  548 PPEGFPYHHHTVAGPCIPYGMGRVELPARVGGEPPQVLAAXXXXXXXXXXXXXXX-------------------XXXXXXXXXSGCATLQNAQPACGMGGLFWPTLYDLTAAKRRQRERLRECFRKFSRGQRLDVLDPSGVWMGAEVMWAPGDGGVGTLRV-----------GGWGEDGGAXXXXXXXXXXAPAAEVAGXXXXXXXXXXXXXXXXXPLAGYPVGGNGGMPEWRRVLQLGLM-------------ADSGQAAPHPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVTTEAPKASQSLXXXXXXXXXXXXXXXXXXXXXXXXXXPVLANWNPGAGAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFGQGG---------TTPPGSNRKLVRVHYEGHKKKYDEWISVQSGRLAPFRSRTTRPLSVTMQFVEQVVKGASVSSSRGVPAPDCVEIFMSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARLFLASDFRDGCCDGEELDDHRTLEYLNVTSGSVLLVCVAPTVKDLAPAGSLCVSP 1106          
BLAST of mRNA_L-elsbetiae_contig9705.18679.1 vs. uniprot
Match: D7FVT1_ECTSI (Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT1_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.990e-43
Identity = 137/357 (38.38%), Postives = 157/357 (43.98%), Query Frame = 0
Query:   86 GGSTLQNAQPACSMGGLFWPTLYDLTIAKRRQRERLRDCFRRFSRGQRLDVRDPSGVWMGAEVVWAPKRDRATSAAVXXXXXXXXXXGGGVA-----------------------------YVGGQLEILGGADPGIPEWRRLLQLGIVGGIMNIANNQGVVANAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSNGNGVGANQLVSMVALGDSCDWVTTGAVDIAQAHLASAVTAAADSRRFSAPSGRAGASAASFSPPAASAGGNGMAAPASTPEVAPAGNSRKSILVHYEGHKSKYDEWINVQSPRLAPFRSRTTRPLSVTMQSVEKVVNGASVS-CPR 412
            G +TLQNAQPAC MGGLFWPTLYDL  AKRRQRERLR+CFR+FSRGQ+LDVRDPSGVWMGAEV+WAP         V           GG                               + G  +    G D G+PEWRRLLQLG++             A+ G A                                        ++N N  GA   ++ V  G                                                 A   G G           P G++RK + VHYEGHK KYDEWI+VQS RLAPFRSRTTRPLSVTMQ VE+VVNGASVS C R
Sbjct:  389 GWATLQNAQPACGMGGLFWPTLYDLMAAKRRQRERLRECFRKFSRGQKLDVRDPSGVWMGAEVMWAPG-----DGGVGTLRADGCGEDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFAGSPV----GGDAGMPEWRRLLQLGLM-------------ADGGRALPGSPPPA--------------------------------LANWN-PGAGATLAAVPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXALVFGQGG--------TTPPGSNRKLVRVHYEGHKKKYDEWISVQSGRLAPFRSRTTRPLSVTMQFVEQVVNGASVSRCQR 670          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9705.18679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9W3_9PHAE7.230e-10949.59UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FVT1_ECTSI4.990e-4338.38Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 343..390
e-value: 3.6E-8
score: 35.1
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 45..565
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 354..385

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9705contigL-elsbetiae_contig9705:1645..4979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9705.18679.1mRNA_L-elsbetiae_contig9705.18679.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9705 1633..5100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9705.18679.1 ID=prot_L-elsbetiae_contig9705.18679.1|Name=mRNA_L-elsbetiae_contig9705.18679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=600bp
MPSEGCPHHHHTVPGPTIPFGMVGVELPARYGGRLGGFMVAGGAASIGGA
SAATAAATAGGGGGGGGGSMAGHGRLIAPGSLHHGGGSTLQNAQPACSMG
GLFWPTLYDLTIAKRRQRERLRDCFRRFSRGQRLDVRDPSGVWMGAEVVW
APKRDRATSAAVAAAVAGAVGGGGGVAYVGGQLEILGGADPGIPEWRRLL
QLGIVGGIMNIANNQGVVANAGAAGAGAADAGAQAVAQAAVLAAAHAAAA
ADAAMAAAAPAGGGVSNGNGVGANQLVSMVALGDSCDWVTTGAVDIAQAH
LASAVTAAADSRRFSAPSGRAGASAASFSPPAASAGGNGMAAPASTPEVA
PAGNSRKSILVHYEGHKSKYDEWINVQSPRLAPFRSRTTRPLSVTMQSVE
KVVNGASVSCPRGVPAPDCVEISMSCPWISHCAGGGVVTYRLPRSTILGA
VLADFCHLAGISLWRSTVQRARLHMAADIRHGACAAEELDDRRTLEYLDI
TSGSVLLVCVAPAAKDLLPAGRQCVPPPLLPPRCDGRGAGSPRSGPGGGG
RRVGGGGGGGGGSHGGGGIGQNHGLLPSDEDMELGPDVMLAGESDESDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf