mRNA_L-elsbetiae_contig9678.18650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9678.18650.1
Unique NamemRNA_L-elsbetiae_contig9678.18650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.740e-34
Identity = 75/114 (65.79%), Postives = 79/114 (69.30%), Query Frame = -1 
Query:   76 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRVQFGGXXXXXXXXXNNDVAAAGGAPGAWGKRPQVWSGN------AAAXXXXXXXTTEKEPSHRVEASLRALFRELSEVEGG 399
            SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFR QFGG         N+    A    GAWGK+PQVW G+      AA          EKEPSHRVEASLRALFRELSEV+GG
Sbjct: 2060 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGGS-----NSCTTTASAVSGAWGKKPQVWRGDGPVATVAAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 2168
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.610e-33
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = -1 
Query:   76 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRVQFGGXXXXXXXXXNNDVAAAGGAPGAWGKRPQVWSGNA------AAXXXXXXXTTEKEPSHRVEASLRALFRELSEVEGG 399
            SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFR QFGG         N+    A    GAWGK+PQVW G+       A          EKEPSHRVEASLRALFRELSEV+GG
Sbjct: 1528 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDS-----NSGTTNAAAVSGAWGKKPQVWRGDGPVATVVAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 1636
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A7S3UU50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU50_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 7.620e-8
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -1 
Query:  292 PRGLVNATGQNNCFLNVVVQSLWHLEAFRVQF 387
            PRGL N TGQNNCFLNVVVQSLWHL+AFR  F
Sbjct:  270 PRGLTNETGQNNCFLNVVVQSLWHLDAFREPF 301
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A7R8UZA6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UZA6_HERIL)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = -1 
Query:  292 GLTKKDAASPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRVQF 429
            G  K    SP  P  +GL+NA GQNNCFLN  VQ LWHL+AFR  F
Sbjct:   22 GTLKTAFLSPVEPSSKGLLNAPGQNNCFLNCAVQVLWHLDAFRRSF 67
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: L8GH96_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH96_ACACA)

HSP 1 Score: 57.0 bits (136), Expect = 2.820e-6
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = -1 
Query:  286 RGLVNATGQNNCFLNVVVQSLWHLEAFRVQFGG 384
            +GL+N  G+NNCFLNVV+QSLWHL++FR +F G
Sbjct:   23 KGLINPLGENNCFLNVVIQSLWHLDSFRTRFEG 55
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A6G0XV01_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV01_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.840e-6
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = -1 
Query:  298 LTKKDAASPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRV 426
            +T +      A M +GL+N  GQNNCFLNV++QSLWHL++FRV
Sbjct:    1 MTDRATMLKHASMHKGLMNQIGQNNCFLNVIIQSLWHLDSFRV 43
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A7S4GGM6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGM6_9EUGL)

HSP 1 Score: 55.5 bits (132), Expect = 8.340e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = -1 
Query:  286 RGLVNATGQNNCFLNVVVQSLWHLEAFRVQFGG 384
            +G+VNA G+NNCFLNVV+QSLWH  AFR  F G
Sbjct:    7 KGIVNALGENNCFLNVVIQSLWHTSAFREAFKG 39
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A024UGD5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGD5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.270e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = -1 
Query:  298 LTKKDAASPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRV 426
            +T + A      M +GL N  GQNNCFLNV++QSLWHL++FRV
Sbjct:    1 MTDRAAMLKHTSMHKGLTNHIGQNNCFLNVIIQSLWHLDSFRV 43
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A3L6USX4_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6USX4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.110e-5
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = -1 
Query:  298 MPRGLVNATGQNNCFLNVVVQSLWHLEAFRV 390
            M +GL N  GQNNCFLNV++QSLWHL++FRV
Sbjct:   13 MHKGLTNYVGQNNCFLNVIIQSLWHLDSFRV 43
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BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Match: A0A7S3C552_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C552_9VIRI)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = -1 
Query:  295 DAASPSAPMPRG---LVNATGQNNCFLNVVVQSLWHLEAFRVQ 414
            DA S  +P  RG   L NATG+ NCFLNVVVQSLWHL  FR Q
Sbjct:   11 DAGSSPSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQ 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9678.18650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KBH4_9PHAE4.740e-3465.79USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEW9_ECTSI1.610e-3364.91USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UU50_HETAK7.620e-884.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R8UZA6_HERIL1.360e-758.70Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
L8GH96_ACACA2.820e-666.67Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]
A0A6G0XV01_9STRA4.840e-655.81USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S4GGM6_9EUGL8.340e-669.70Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A024UGD5_9STRA9.270e-655.81Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A3L6USX4_9STRA1.110e-570.97USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S3C552_9VIRI1.320e-565.12Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9678contigL-elsbetiae_contig9678:1198..1735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.0426009-CDS-L-elsbetiae_contig9678:1197..17341622817032.0426009-CDS-L-elsbetiae_contig9678:1197..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9678 1198..1734 +
1691683996.019836-CDS-L-elsbetiae_contig9678:1197..17341691683996.019836-CDS-L-elsbetiae_contig9678:1197..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9678 1198..1734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9678.18650.1prot_L-elsbetiae_contig9678.18650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9678 1198..1734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9678.18650.1

>prot_L-elsbetiae_contig9678.18650.1 ID=prot_L-elsbetiae_contig9678.18650.1|Name=mRNA_L-elsbetiae_contig9678.18650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
APAAIAACADPSPHPDVIVYSAAATTAFHLREFSEQRSQRRLHAVARLLL
GRRRRRCGCRRRVAAPHLRSLPPGARRAARGGDVVIAPAAAAASAAAELN
AEGLEVPQGLHHDIQEAVVLPRRVHEPPRHRRGGRRRVFLRQPRWRPRSR
PRSRSRRRRAAAPLTPLRFSSSGPRGRVY
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mRNA from alignment at L-elsbetiae_contig9678:1198..1735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9678.18650.1 ID=mRNA_L-elsbetiae_contig9678.18650.1|Name=mRNA_L-elsbetiae_contig9678.18650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=538bp|location=Sequence derived from alignment at L-elsbetiae_contig9678:1198..1735+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCCGCTGCTATTGCTGCCTGCGCCGACCCCTCGCCCCATCCCGACGT
CATCGTCTACTCCGCCGCCGCCACCACCGCCTTCCACCTCCGAGAGTTCT
CGGAACAGCGCTCGCAGAGACGCCTCCACGCGGTGGCTCGGCTCCTTCTC
GGTCGTCGCCGCCGCCGTTGCGGCTGCCGCCGCCGCGTTGCCGCTCCACA
CCTGCGGTCTCTTCCCCCAGGCGCCAGGCGCGCCGCCCGCGGCGGCGACG
TCGTTATTGCTCCCGCTGCCGCTGCCGCTTCCGCCGCCGCCGAACTGAAC
GCGGAAGGCCTCGAGGTGCCACAGGGACTGCACCACGACATTCAGGAAGC
AGTTGTTCTGCCCCGTCGCGTTCACGAGCCCCCTCGGCATCGGCGCGGAG
GGCGACGCCGCGTCTTTCTTCGTCAACCCCGTTGGCGACCCCGCTCGCGA
CCCCGATCTCGATCCCGTCGACGACGGGCGGCCGCTCCCCTTACCCCCCT
TCGTTTTTCTTCCTCCGGCCCCCGCGGGCGAGTCTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9678:1198..1735+

>mRNA_L-elsbetiae_contig9678.18650.1 ID=mRNA_L-elsbetiae_contig9678.18650.1|Name=mRNA_L-elsbetiae_contig9678.18650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig9678:1198..1735+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCCGCTGCTATTGCTGCCTGCGCCGACCCCTCGCCCCATCCCGACGT
CATCGTCTACTCCGCCGCCGCCACCACCGCCTTCCACCTCCGAGAGTTCT
CGGAACAGCGCTCGCAGAGACGCCTCCACGCGGTGGCTCGGCTCCTTCTC
GGTCGTCGCCGCCGCCGTTGCGGCTGCCGCCGCCGCGTTGCCGCTCCACA
CCTGCGGTCTCTTCCCCCAGGCGCCAGGCGCGCCGCCCGCGGCGGCGACG
TCGTTATTGCTCCCGCTGCCGCTGCCGCTTCCGCCGCCGCCGAACTGAAC
GCGGAAGGCCTCGAGGTGCCACAGGGACTGCACCACGACATTCAGGAAGC
AGTTGTTCTGCCCCGTCGCGTTCACGAGCCCCCTCGGCATCGGCGCGGAG
GGCGACGCCGCGTCTTTCTTCGTCAACCCCGTTGGCGACCCCGCTCGCGA
CCCCGATCTCGATCCCGTCGACGACGGGCGGCCGCTCCCCTTACCCCCCT
TCGTTTTTCTTCCTCCGGCCCCCGCGGGCGAGTCTACGCCCCCGCTGCTA
TTGCTGCCTGCGCCGACCCCTCGCCCCATCCCGACGTCATCGTCTACTCC
GCCGCCGCCACCACCGCCTTCCACCTCCGAGAGTTCTCGGAACAGCGCTC
GCAGAGACGCCTCCACGCGGTGGCTCGGCTCCTTCTCGGTCGTCGCCGCC
GCCGTTGCGGCTGCCGCCGCCGCGTTGCCGCTCCACACCTGCGGTCTCTT
CCCCCAGGCGCCAGGCGCGCCGCCCGCGGCGGCGACGTCGTTATTGCTCC
CGCTGCCGCTGCCGCTTCCGCCGCCGCCGAACTGAACGCGGAAGGCCTCG
AGGTGCCACAGGGACTGCACCACGACATTCAGGAAGCAGTTGTTCTGCCC
CGTCGCGTTCACGAGCCCCCTCGGCATCGGCGCGGAGGGCGACGCCGCGT
CTTTCTTCGTCAACCCCGTTGGCGACCCCGCTCGCGACCCCGATCTCGAT
CCCGTCGACGACGGGCGGCCGCTCCCCTTACCCCCCTTCGTTTTTCTTCC
TCCGGCCCCCGCGGGCGAGTCTAC
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