mRNA_L-elsbetiae_contig9499.18480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9499.18480.1
Unique NamemRNA_L-elsbetiae_contig9499.18480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9499.18480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9499contigL-elsbetiae_contig9499:188..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9499.18480.1prot_L-elsbetiae_contig9499.18480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9499 233..592 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817016.7348158-UTR-L-elsbetiae_contig9499:187..2321622817016.7348158-UTR-L-elsbetiae_contig9499:187..232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9499 188..232 +
1691683985.2396595-UTR-L-elsbetiae_contig9499:187..2321691683985.2396595-UTR-L-elsbetiae_contig9499:187..232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9499 188..232 +
1622817016.7564073-UTR-L-elsbetiae_contig9499:592..7381622817016.7564073-UTR-L-elsbetiae_contig9499:592..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9499 593..738 +
1691683985.2733262-UTR-L-elsbetiae_contig9499:592..7381691683985.2733262-UTR-L-elsbetiae_contig9499:592..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9499 593..738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817016.7453325-CDS-L-elsbetiae_contig9499:232..5921622817016.7453325-CDS-L-elsbetiae_contig9499:232..592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9499 233..592 +
1691683985.2549415-CDS-L-elsbetiae_contig9499:232..5921691683985.2549415-CDS-L-elsbetiae_contig9499:232..592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9499 233..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9499.18480.1

>prot_L-elsbetiae_contig9499.18480.1 ID=prot_L-elsbetiae_contig9499.18480.1|Name=mRNA_L-elsbetiae_contig9499.18480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MAVNSGRLSARGEQKKKLLHGRVFLLLVLRACNLLDTVGGSDPSAPVAQK
LSWSNSRVGAAPDRCWTETVDSDKTEGKRWFLWSPDGRKGRARGVKACGA
RGKGGARCQRRRRTESLRL*
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mRNA from alignment at L-elsbetiae_contig9499:188..738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9499.18480.1 ID=mRNA_L-elsbetiae_contig9499.18480.1|Name=mRNA_L-elsbetiae_contig9499.18480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=551bp|location=Sequence derived from alignment at L-elsbetiae_contig9499:188..738+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGAGCTGCGTAGGAGAAGCTGTGCTGTTACCTCCTACATACGATGGC
TGTGAATAGTGGTCGCTTGTCCGCACGTGGAGAACAAAAAAAAAAACTTC
TCCACGGCCGTGTTTTTTTGTTGCTTGTTCTAAGGGCGTGTAATCTCCTA
GACACCGTTGGAGGGTCCGATCCCTCAGCTCCTGTGGCACAGAAGCTCTC
CTGGAGCAACAGCCGTGTGGGGGCAGCACCGGACAGGTGCTGGACAGAGA
CAGTTGACAGTGACAAGACAGAAGGGAAGAGGTGGTTCTTGTGGTCTCCC
GACGGAAGGAAGGGGAGGGCAAGAGGAGTGAAAGCGTGTGGGGCGCGAGG
CAAGGGCGGGGCCCGCTGCCAGCGCAGACGCAGGACTGAATCACTCCGCC
TCTGAGCTGGCACGCTGACGACGTGGCAGATAGGACAGAAACGCCCCGCT
AGGCGGGTTAAAACGCGCGTGCGTCGATGATGGGAGACGAACGCGAAAAG
GCGCGCATACAAGAACGCGTGAAAGTTGTCCCGCTGGTTGTTGTAGGTTA
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9499:188..738+

>mRNA_L-elsbetiae_contig9499.18480.1 ID=mRNA_L-elsbetiae_contig9499.18480.1|Name=mRNA_L-elsbetiae_contig9499.18480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig9499:188..738+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGTGAATAGTGGTCGCTTGTCCGCACGTGGAGAACAAAAAAAAAA
ACTTCTCCACGGCCGTGTTTTTTTGTTGCTTGTTCTAAGGGCGTGTAATC
TCCTAGACACCGTTGGAGGGTCCGATCCCTCAGCTCCTGTGGCACAGAAG
CTCTCCTGGAGCAACAGCCGTGTGGGGGCAGCACCGGACAGGTGCTGGAC
AGAGACAGTTGACAGTGACAAGACAGAAGGGAAGAGGTGGTTCTTGTGGT
CTCCCGACGGAAGGAAGGGGAGGGCAAGAGGAGTGAAAGCGTGTGGGGCG
CGAGGCAAGGGCGGGGCCCGCTGCCAGCGCAGACGCAGGACTGAATCACT
CCGCCTCTGAATGGCTGTGAATAGTGGTCGCTTGTCCGCACGTGGAGAAC
AAAAAAAAAAACTTCTCCACGGCCGTGTTTTTTTGTTGCTTGTTCTAAGG
GCGTGTAATCTCCTAGACACCGTTGGAGGGTCCGATCCCTCAGCTCCTGT
GGCACAGAAGCTCTCCTGGAGCAACAGCCGTGTGGGGGCAGCACCGGACA
GGTGCTGGACAGAGACAGTTGACAGTGACAAGACAGAAGGGAAGAGGTGG
TTCTTGTGGTCTCCCGACGGAAGGAAGGGGAGGGCAAGAGGAGTGAAAGC
GTGTGGGGCGCGAGGCAAGGGCGGGGCCCGCTGCCAGCGCAGACGCAGGA
CTGAATCACTCCGCCTCTGA
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