mRNA_L-elsbetiae_contig949.18470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig949.18470.1
Unique NamemRNA_L-elsbetiae_contig949.18470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig949.18470.1 vs. uniprot
Match: A0A6H5L932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L932_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.610e-19
Identity = 154/355 (43.38%), Postives = 174/355 (49.01%), Query Frame = 1 
Query:  343 KPSTTDGQWRTPRTDLSAYQAPTGGPGPRESGPNAAAARPNISPYQGPVAATAHPRGGXXXXXXXXXALRTDMSAYQPXXXXXXXXXXXXXXVXXGAPSRAPRXXXXXXXXXXGTPGTARGGGGXXXXRP-TVAXXXXXXXXXXXXXSAATAGFNKRTGVGSPYHP----NQSSPALAGMSGPQGRPANVTSPGNKGTGKAAPTAGGRSEHEARSGPALGRGGGSGGTTGVXXXXXXXXXXXXXXXXXXXXXXXAPAVGSGTMAKGKERQNANPSSGXXXXXXXXXXXXXXXPGGGLDQQQAQWKQQPHGQRAGGMKPHAGNAQQQRQQQSKAVTVSGSTAAGARPSAAEAKKVG 1392
            K S TDGQ R   TDLSAYQAPTG  GP+E+  +A   R ++SPY GP  AT   RGG  XXXXXX   R D+ AYQP   XXXXXXXX       A +   +    XXXXXX T   A G GGXXXX P T           XXXX           GVGSPY P    NQSSPAL G +GPQGR ++ T  GN G GK   +  G   HE RS  + G  G  G T+ V                          + SG   K KE QN + ++G                 GG  QQQ QWKQQ H Q AGG KP AG    Q  QQ K   V  +TA G + SA EAKKVG
Sbjct: 1919 KSSATDGQ-RPQMTDLSAYQAPTG-QGPKETRVSATT-RSHMSPYHGP--ATTQARGGRGXXXXXXY--RNDLPAYQPPSSXXXXXXXX------AARAXXXQRTDLXXXXXXXTASGAXGXGGXXXXXPRTDLSAYQSSPAGXXXXXXXXXXXXXXXGVGSPYQPSSGANQSSPALTGTAGPQGRSSHATGAGNNGAGKVPGSRHGA--HETRSAGSTGGVGNGGATSAVPRGGRSG------------------TLASGVPPKMKEGQNGS-AAGMKTADVLGSKAASGALSGGPGQQQPQWKQQSHAQPAGGAKPRAGT---QHYQQPKTAAVQ-ATAGGTKSSAVEAKKVG 2235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig949.18470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L932_9PHAE1.610e-1943.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig949contigL-elsbetiae_contig949:10243..12916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1904
Cds size1902
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig949.18470.1prot_L-elsbetiae_contig949.18470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig949 10243..12916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817015.8393867-CDS-L-elsbetiae_contig949:10242..113351622817015.8393867-CDS-L-elsbetiae_contig949:10242..11335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 10243..11335 -
1691683984.6483533-CDS-L-elsbetiae_contig949:10242..113351691683984.6483533-CDS-L-elsbetiae_contig949:10242..11335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 10243..11335 -
1622817015.8506086-CDS-L-elsbetiae_contig949:11735..124361622817015.8506086-CDS-L-elsbetiae_contig949:11735..12436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 11736..12436 -
1691683984.6572595-CDS-L-elsbetiae_contig949:11735..124361691683984.6572595-CDS-L-elsbetiae_contig949:11735..12436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 11736..12436 -
1622817015.8614702-CDS-L-elsbetiae_contig949:12808..129161622817015.8614702-CDS-L-elsbetiae_contig949:12808..12916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 12809..12916 -
1691683984.6656785-CDS-L-elsbetiae_contig949:12808..129161691683984.6656785-CDS-L-elsbetiae_contig949:12808..12916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig949 12809..12916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig949.18470.1

>prot_L-elsbetiae_contig949.18470.1 ID=prot_L-elsbetiae_contig949.18470.1|Name=mRNA_L-elsbetiae_contig949.18470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=634bp
RGQGHPLSASGKLPGEGPGAVDIDMMDIPLLHDDPEAKPQQQPQQEQQPA
AGASTASRGAAGQPPAAASAAAVGSTSSTSSNGGPERAPQNHPDTTQPRG
AGGAGGERSAAGAPKPSTTDGQWRTPRTDLSAYQAPTGGPGPRESGPNAA
AARPNISPYQGPVAATAHPRGGGGGRGRGGGALRTDMSAYQPPSSAPPPG
SSSSSSVGGGAPSRAPRTGLSAYQPPSGTPGTARGGGGGGGRRPTVARTD
LSAYQPPSATSAATAGFNKRTGVGSPYHPNQSSPALAGMSGPQGRPANVT
SPGNKGTGKAAPTAGGRSEHEARSGPALGRGGGSGGTTGVGRAGGAGDGG
GAKSAASRVDGPGAPAVGSGTMAKGKERQNANPSSGSGGAVASASKAAAG
APGGGLDQQQAQWKQQPHGQRAGGMKPHAGNAQQQRQQQSKAVTVSGSTA
AGARPSAAEAKKVGSSPSQPQQGQHHQSPYQPQQQQQQQSLPQQQYQQYQ
YSHPQQLSQSASATSSSSVYDPYGQHQPTTAAAPAPAKAVVPSASYGQVG
AQQATYTPSAAQGDATAAVAVGPAAASSSGTVGYISGGSQSWGSASKTDI
TVTPAEGATSASTVPVGTNSTYATASVAASGWPP
back to top

mRNA from alignment at L-elsbetiae_contig949:10243..12916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig949.18470.1 ID=mRNA_L-elsbetiae_contig949.18470.1|Name=mRNA_L-elsbetiae_contig949.18470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2674bp|location=Sequence derived from alignment at L-elsbetiae_contig949:10243..12916- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGCCAGGGCCACCCGTTGTCTGCGTCTGGCAAGCTTCCGGGAGAGGG
CCCTGGAGCGGTCGACATTGACATGATGGACATCCCTCTTCTTCACGATG
ACCCCGAGGTAGGTGGCGGAAAGGTGCTGGCTGCTTGCGACGAAAGCGTG
GCGCAGGAAATCTCTCGTTGAAATTTGTTTTTAGATGTATTGGTCGATTT
TACGCGTATGTATGTACGCTGTGCCCTCGCGGAGTAGAATGCGTAGCGTG
TGTGTAGGTAAATCGAAAGACGATGCCCACGTAATTGTCAATGCGGTGTA
GAGAGTTGTCAAAGGTTTCATGAAGCAAGGAGCAGAGACATCACCTACCA
AAGCAAACAGAAGCCGCAAAACGTGACAACGATGAGACTTTGGCGTCTGT
ATTTACGCTTTTTACCCGACCAAGGCTGCATCAATCGATTTTCATCTTTG
TAATCGTCGCTTGAATATCCGCACACACAGGCGAAACCGCAGCAGCAGCC
GCAGCAGGAGCAACAACCCGCCGCTGGTGCCTCCACCGCTAGCCGCGGCG
CCGCAGGCCAACCCCCCGCCGCCGCATCCGCCGCCGCCGTCGGCAGCACC
AGCAGCACCAGCAGCAATGGTGGGCCGGAGCGTGCCCCGCAAAACCATCC
GGACACGACCCAACCTCGCGGCGCCGGCGGCGCAGGCGGGGAACGCTCCG
CCGCCGGTGCGCCAAAGCCCTCTACCACCGATGGACAATGGCGCACACCG
AGGACCGATCTATCCGCCTATCAAGCACCCACCGGCGGCCCCGGGCCGAG
GGAAAGTGGGCCGAACGCGGCGGCGGCGAGGCCGAATATCTCCCCGTACC
AAGGGCCCGTCGCTGCCACAGCCCATCCCCGTGGCGGAGGAGGCGGCCGA
GGACGGGGCGGGGGGGCACTGCGGACCGATATGTCGGCGTACCAGCCACC
TTCCTCCGCGCCTCCTCCCGGTTCTTCTTCTTCTTCTTCCGTCGGCGGCG
GTGCGCCATCGCGAGCGCCGAGGACGGGCCTGTCGGCGTACCAACCGCCC
AGCGGGACCCCCGGCACCGCTCGCGGGGGCGGGGGCGGAGGCGGGAGACG
GCCGACGGTGGCCCGGACGGACCTATCGGCGTACCAACCGCCGAGTGCGA
CTTCAGCTGCCACCGCCGGCTTCAACAAAAGGTCAGTCGCATTCCTTCAG
TACTCAGGGCCGCAATCCAGGGCTCTTGGTTGGCTTTGTGTTGCTAACAA
TGGGCCGGGTGCGGGCGTCCCTCGGTGGCAATGGTTTCGATTCCAGAATG
CTTGCGGGGGGTATGCATGTCGTTGGAGGGTTTGTGTTTGGTTCCGAGTG
AAGCGCACGCGCCGTTGTTTTCTGTACCCGGTGTAGACTCTGGGAATGCG
TTGTCTTTCAGGATTTCAAGCTCGCTCGACAGCAGTAGCGAGAAGTTCGT
TCAGGTCTCGCAGGTAGGCCGGTTGATGGAGATACATATTTATCCACCCT
TTTTTTCTTCACACATAAGTGCTTGGGACAATATCACCTCCTCTTCTTAC
TTGTATTTCGTTCCGTGCGACGACCGCCTAGGACTGGTGTTGGGTCGCCT
TATCATCCCAATCAGTCGTCGCCTGCTCTCGCCGGGATGTCGGGGCCGCA
AGGAAGACCGGCCAACGTCACCAGCCCCGGGAACAAAGGTACCGGGAAAG
CGGCACCCACCGCCGGTGGCCGCAGTGAGCACGAGGCGAGGTCAGGCCCG
GCGCTTGGTCGCGGTGGCGGTAGCGGCGGGACCACCGGTGTCGGTCGCGC
GGGCGGTGCAGGCGACGGCGGCGGCGCCAAATCAGCAGCATCTCGAGTTG
ACGGCCCCGGTGCTCCCGCTGTTGGTAGCGGGACCATGGCGAAGGGGAAG
GAAAGGCAGAATGCGAACCCTTCTTCTGGGTCCGGCGGCGCTGTTGCCTC
CGCGTCGAAGGCGGCGGCCGGAGCACCGGGCGGTGGACTGGACCAGCAGC
AGGCACAGTGGAAGCAACAGCCTCACGGTCAACGTGCCGGGGGGATGAAG
CCGCACGCAGGCAATGCGCAGCAGCAGCGCCAGCAGCAGTCGAAGGCAGT
GACCGTGTCGGGATCGACCGCCGCAGGAGCAAGACCTAGCGCAGCGGAAG
CGAAGAAGGTGGGCAGCTCCCCCTCCCAACCGCAACAGGGGCAGCACCAC
CAATCGCCGTACCAACCGCAGCAACAACAGCAGCAACAGTCGTTGCCGCA
GCAGCAATACCAGCAGTACCAGTACTCGCACCCTCAACAACTATCCCAAT
CGGCGTCAGCAACAAGCAGCAGCAGCGTGTACGATCCTTACGGCCAGCAC
CAGCCTACGACGGCCGCAGCGCCGGCACCGGCGAAGGCGGTGGTGCCATC
GGCCTCTTACGGCCAAGTAGGTGCGCAGCAGGCGACGTACACGCCGTCCG
CTGCCCAGGGCGACGCTACTGCCGCCGTGGCTGTTGGACCGGCGGCGGCG
TCGTCTAGTGGCACGGTGGGGTACATCAGTGGCGGAAGCCAATCGTGGGG
CTCCGCTAGCAAGACCGACATCACCGTCACCCCGGCAGAAGGAGCAACGT
CAGCTTCTACTGTCCCCGTTGGCACAAACAGTACGTACGCGACCGCGAGT
GTTGCTGCATCTGGGTGGCCGCCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig949:10243..12916-

>mRNA_L-elsbetiae_contig949.18470.1 ID=mRNA_L-elsbetiae_contig949.18470.1|Name=mRNA_L-elsbetiae_contig949.18470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3804bp|location=Sequence derived from alignment at L-elsbetiae_contig949:10243..12916- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGCCAGGGCCACCCGTTGTCTGCGTCTGGCAAGCTTCCGGGAGAGGG
CCCTGGAGCGGTCGACATTGACATGATGGACATCCCTCTTCTTCACGATG
ACCCCGAGAGGGGCCAGGGCCACCCGTTGTCTGCGTCTGGCAAGCTTCCG
GGAGAGGGCCCTGGAGCGGTCGACATTGACATGATGGACATCCCTCTTCT
TCACGATGACCCCGAGGCGAAACCGCAGCAGCAGCCGCAGCAGGAGCAAC
AACCCGCCGCTGGTGCCTCCACCGCTAGCCGCGGCGCCGCAGGCCAACCC
CCCGCCGCCGCATCCGCCGCCGCCGTCGGCAGCACCAGCAGCACCAGCAG
CAATGGTGGGCCGGAGCGTGCCCCGCAAAACCATCCGGACACGACCCAAC
CTCGCGGCGCCGGCGGCGCAGGCGGGGAACGCTCCGCCGCCGGTGCGCCA
AAGCCCTCTACCACCGATGGACAATGGCGCACACCGAGGACCGATCTATC
CGCCTATCAAGCACCCACCGGCGGCCCCGGGCCGAGGGAAAGTGGGCCGA
ACGCGGCGGCGGCGAGGCCGAATATCTCCCCGTACCAAGGGCCCGTCGCT
GCCACAGCCCATCCCCGTGGCGGAGGAGGCGGCCGAGGACGGGGCGGGGG
GGCACTGCGGACCGATATGTCGGCGTACCAGCCACCTTCCTCCGCGCCTC
CTCCCGGTTCTTCTTCTTCTTCTTCCGTCGGCGGCGGTGCGCCATCGCGA
GCGCCGAGGACGGGCCTGTCGGCGTACCAACCGCCCAGCGGGACCCCCGG
CACCGCTCGCGGGGGCGGGGGCGGAGGCGGGAGACGGCCGACGGTGGCCC
GGACGGACCTATCGGCGTACCAACCGCCGAGTGCGACTTCAGCTGCCACC
GCCGGCTTCAACAAAAGGCGAAACCGCAGCAGCAGCCGCAGCAGGAGCAA
CAACCCGCCGCTGGTGCCTCCACCGCTAGCCGCGGCGCCGCAGGCCAACC
CCCCGCCGCCGCATCCGCCGCCGCCGTCGGCAGCACCAGCAGCACCAGCA
GCAATGGTGGGCCGGAGCGTGCCCCGCAAAACCATCCGGACACGACCCAA
CCTCGCGGCGCCGGCGGCGCAGGCGGGGAACGCTCCGCCGCCGGTGCGCC
AAAGCCCTCTACCACCGATGGACAATGGCGCACACCGAGGACCGATCTAT
CCGCCTATCAAGCACCCACCGGCGGCCCCGGGCCGAGGGAAAGTGGGCCG
AACGCGGCGGCGGCGAGGCCGAATATCTCCCCGTACCAAGGGCCCGTCGC
TGCCACAGCCCATCCCCGTGGCGGAGGAGGCGGCCGAGGACGGGGCGGGG
GGGCACTGCGGACCGATATGTCGGCGTACCAGCCACCTTCCTCCGCGCCT
CCTCCCGGTTCTTCTTCTTCTTCTTCCGTCGGCGGCGGTGCGCCATCGCG
AGCGCCGAGGACGGGCCTGTCGGCGTACCAACCGCCCAGCGGGACCCCCG
GCACCGCTCGCGGGGGCGGGGGCGGAGGCGGGAGACGGCCGACGGTGGCC
CGGACGGACCTATCGGCGTACCAACCGCCGAGTGCGACTTCAGCTGCCAC
CGCCGGCTTCAACAAAAGGACTGGTGTTGGGTCGCCTTATCATCCCAATC
AGTCGTCGCCTGCTCTCGCCGGGATGTCGGGGCCGCAAGGAAGACCGGCC
AACGTCACCAGCCCCGGGAACAAAGGTACCGGGAAAGCGGCACCCACCGC
CGGTGGCCGCAGTGAGCACGAGGCGAGGTCAGGCCCGGCGCTTGGTCGCG
GTGGCGGTAGCGGCGGGACCACCGGTGTCGGTCGCGCGGGCGGTGCAGGC
GACGGCGGCGGCGCCAAATCAGCAGCATCTCGAGTTGACGGCCCCGGTGC
TCCCGCTGTTGGTAGCGGGACCATGGCGAAGGGGAAGGAAAGGCAGAATG
CGAACCCTTCTTCTGGGTCCGGCGGCGCTGTTGCCTCCGCGTCGAAGGCG
GCGGCCGGAGCACCGGGCGGTGGACTGGACCAGCAGCAGGCACAGTGGAA
GCAACAGCCTCACGGTCAACGTGCCGGGGGGATGAAGCCGCACGCAGGCA
ATGCGCAGCAGCAGCGCCAGCAGCAGTCGAAGGCAGTGACCGTGTCGGGA
TCGACCGCCGCAGGAGCAAGACCTAGCGCAGCGGAAGCGAAGAAGGTGGG
CAGCTCCCCCTCCCAACCGCAACAGGGGCAGCACCACCAATCGCCGTACC
AACCGCAGCAACAACAGCAGCAACAGTCGTTGCCGCAGCAGCAATACCAG
CAGTACCAGTACTCGCACCCTCAACAACTATCCCAATCGGCGTCAGCAAC
AAGCAGCAGCAGCGTGTACGATCCTTACGGCCAGCACCAGCCTACGACGG
CCGCAGCGCCGGCACCGGCGAAGGCGGTGGTGCCATCGGCCTCTTACGGC
CAAGTAGGTGCGCAGCAGGCGACGTACACGCCGTCCGCTGCCCAGGGCGA
CGCTACTGCCGCCGTGGCTGTTGGACCGGCGGCGGCGTCGTCTAGTGGCA
CGGTGGGGTACATCAGTGGCGGAAGCCAATCGTGGGGCTCCGCTAGCAAG
ACCGACATCACCGTCACCCCGGCAGAAGGAGCAACGTCAGCTTCTACTGT
CCCCGTTGGCACAAACAGTACGTACGCGACCGCGAGTGTTGCTGCATCTG
GGTGGCCGCCTGACTGGTGTTGGGTCGCCTTATCATCCCAATCAGTCGTC
GCCTGCTCTCGCCGGGATGTCGGGGCCGCAAGGAAGACCGGCCAACGTCA
CCAGCCCCGGGAACAAAGGTACCGGGAAAGCGGCACCCACCGCCGGTGGC
CGCAGTGAGCACGAGGCGAGGTCAGGCCCGGCGCTTGGTCGCGGTGGCGG
TAGCGGCGGGACCACCGGTGTCGGTCGCGCGGGCGGTGCAGGCGACGGCG
GCGGCGCCAAATCAGCAGCATCTCGAGTTGACGGCCCCGGTGCTCCCGCT
GTTGGTAGCGGGACCATGGCGAAGGGGAAGGAAAGGCAGAATGCGAACCC
TTCTTCTGGGTCCGGCGGCGCTGTTGCCTCCGCGTCGAAGGCGGCGGCCG
GAGCACCGGGCGGTGGACTGGACCAGCAGCAGGCACAGTGGAAGCAACAG
CCTCACGGTCAACGTGCCGGGGGGATGAAGCCGCACGCAGGCAATGCGCA
GCAGCAGCGCCAGCAGCAGTCGAAGGCAGTGACCGTGTCGGGATCGACCG
CCGCAGGAGCAAGACCTAGCGCAGCGGAAGCGAAGAAGGTGGGCAGCTCC
CCCTCCCAACCGCAACAGGGGCAGCACCACCAATCGCCGTACCAACCGCA
GCAACAACAGCAGCAACAGTCGTTGCCGCAGCAGCAATACCAGCAGTACC
AGTACTCGCACCCTCAACAACTATCCCAATCGGCGTCAGCAACAAGCAGC
AGCAGCGTGTACGATCCTTACGGCCAGCACCAGCCTACGACGGCCGCAGC
GCCGGCACCGGCGAAGGCGGTGGTGCCATCGGCCTCTTACGGCCAAGTAG
GTGCGCAGCAGGCGACGTACACGCCGTCCGCTGCCCAGGGCGACGCTACT
GCCGCCGTGGCTGTTGGACCGGCGGCGGCGTCGTCTAGTGGCACGGTGGG
GTACATCAGTGGCGGAAGCCAATCGTGGGGCTCCGCTAGCAAGACCGACA
TCACCGTCACCCCGGCAGAAGGAGCAACGTCAGCTTCTACTGTCCCCGTT
GGCACAAACAGTACGTACGCGACCGCGAGTGTTGCTGCATCTGGGTGGCC
GCCT
back to top