mRNA_L-elsbetiae_contig9474.18459.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9474.18459.1
Unique NamemRNA_L-elsbetiae_contig9474.18459.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A6H5JFR0_9PHAE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR0_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.350e-63
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  230 QELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            +ELNTLQ+LGAAGKLGE EL GTTFTLSNIGSIGGTYASPV+LHPQVCIGALGRMQRVPRFD VDTDKVVA++V PVSWSADHRVVDGGTLARFSNTWKAYLENPALMLAD R
Sbjct:  299 EELNTLQRLGAAGKLGEEELAGTTFTLSNIGSIGGTYASPVILHPQVCIGALGRMQRVPRFDAVDTDKVVASKVIPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADTR 411          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: D7FZ94_ECTSI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ94_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.350e-61
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  230 QELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            +ELNTLQ+LGAAGKLGE EL GTTFTLSNIGSIGGTYASPV+LHPQVCIGALGRMQRVPRFD VDTDKVVA++V PVSWSADHRVVDGGTLARFSNTWKAYLENPALMLAD R
Sbjct:  511 EELNTLQRLGAAGKLGEEELAGTTFTLSNIGSIGGTYASPVILHPQVCIGALGRMQRVPRFDAVDTDKVVASKVIPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADTR 623          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A6I9NU16_9TELE (lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NU16_9TELE)

HSP 1 Score: 150 bits (380), Expect = 8.200e-42
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F+  QELN LQ LG AG+LG  ELTG TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRFD     +VV A +  VSWSADHR++DG T++RFSN WK YLENPA M+ D +
Sbjct:  110 FEIAQELNRLQALGTAGQLGTNELTGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDA--GGQVVPAHIMNVSWSADHRIIDGATMSRFSNLWKEYLENPAAMVLDLK 224          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A673AYG5_9TELE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AYG5_9TELE)

HSP 1 Score: 154 bits (390), Expect = 4.000e-41
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F   QELN LQ LGAAG+LG A+L+G TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRFDP  + +VV A +  VSWSADHR++DG T+ RFSN WK YLENPA M+ D +
Sbjct:  323 FDIAQELNRLQTLGAAGQLGAADLSGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDP--SGQVVRAHIMAVSWSADHRIIDGATMCRFSNLWKDYLENPARMVLDLK 437          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A484C4P2_PERFV (2-oxoacid_dh domain-containing protein n=2 Tax=Perca flavescens TaxID=8167 RepID=A0A484C4P2_PERFV)

HSP 1 Score: 148 bits (374), Expect = 5.820e-41
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F   QELN LQ LG  G+LG +EL+G TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRFD   +  VV A +  VSWSADHR++DG T+ RFSN W+ YLENPA ML D +
Sbjct:  106 FDIAQELNRLQALGVGGQLGTSELSGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDA--SGSVVPAHIMKVSWSADHRIIDGATMCRFSNLWREYLENPASMLLDLK 220          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: UPI00146D1070 (lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146D1070)

HSP 1 Score: 150 bits (380), Expect = 7.200e-41
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F+  QELN LQ LG AG+LG  ELTG TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRFD     +VV A +  VSWSADHR++DG T++RFSN WK YLENPA M+ D +
Sbjct:  192 FEIAQELNRLQALGTAGQLGTNELTGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDA--GGQVVPAHIMNVSWSADHRIIDGATMSRFSNLWKEYLENPATMVLDLK 306          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: Q4TI95_TETNG ((spotted green pufferfish) hypothetical protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4TI95_TETNG)

HSP 1 Score: 145 bits (367), Expect = 7.580e-41
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGS----IGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F+  QELN LQ LGAAG+LG A+L+G TFTLSNIGS    IGGTYA PV+L P+V IGALG++Q +PRFD     +VV A +  VSWSADHR++DG T+ RFSN WK YLENPA M+ D +
Sbjct:   29 FQLAQELNRLQALGAAGQLGSADLSGGTFTLSNIGSVRAGIGGTYAKPVILPPEVAIGALGKIQILPRFDA--GGQVVRAHIMNVSWSADHRIIDGATMCRFSNLWKEYLENPASMVLDLK 147          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A673AYZ1_9TELE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=6 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AYZ1_9TELE)

HSP 1 Score: 154 bits (390), Expect = 8.800e-41
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F   QELN LQ LGAAG+LG A+L+G TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRFDP  + +VV A +  VSWSADHR++DG T+ RFSN WK YLENPA M+ D +
Sbjct:  369 FDIAQELNRLQTLGAAGQLGAADLSGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDP--SGQVVRAHIMAVSWSADHRIIDGATMCRFSNLWKDYLENPARMVLDLK 483          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A0S7K361_9TELE (ODB2 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7K361_9TELE)

HSP 1 Score: 150 bits (378), Expect = 1.650e-40
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F+  QEL  LQ LGAAG+LG AEL+G TFTLSNIGSIGGTYA PV+L P+V IGALG++Q +PRF P    +V AA +  VSWSADHR++DG T+ RFSN W+ YLENPA ML D +
Sbjct:  198 FQVAQELTRLQTLGAAGQLGTAELSGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFGP--DGQVKAAHIMKVSWSADHRLIDGATMCRFSNLWREYLENPASMLLDLK 312          
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Match: A0A8B6ZJS8_ORYAF (lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=2 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B6ZJS8_ORYAF)

HSP 1 Score: 149 bits (377), Expect = 1.780e-40
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 2
Query:  218 FKHPQELNTLQKLGAAGKLGEAELTGTTFTLSNIGSIGGTYASPVLLHPQVCIGALGRMQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADAR 568
            F+   ELN LQ+LG+AG+LG AELTG TFTLSNIGSIGGTYA PV+L P+V IGALG ++ +PRF+     +V  A++  VSWSADHRV+DG T++RFSN WK+YLENPA ML D +
Sbjct:  187 FEIATELNRLQELGSAGQLGTAELTGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGSIKSLPRFN--QKGEVYKAQIMNVSWSADHRVIDGATVSRFSNLWKSYLENPAFMLLDLK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9474.18459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR0_9PHAE1.350e-6391.15Dihydrolipoamide acetyltransferase component of py... [more]
D7FZ94_ECTSI1.350e-6191.15Dihydrolipoamide acetyltransferase component of py... [more]
A0A6I9NU16_9TELE8.200e-4264.10lipoamide acyltransferase component of branched-ch... [more]
A0A673AYG5_9TELE4.000e-4164.96Dihydrolipoamide acetyltransferase component of py... [more]
A0A484C4P2_PERFV5.820e-4162.392-oxoacid_dh domain-containing protein n=2 Tax=Per... [more]
UPI00146D10707.200e-4164.10lipoamide acyltransferase component of branched-ch... [more]
Q4TI95_TETNG7.580e-4161.98(spotted green pufferfish) hypothetical protein n=... [more]
A0A673AYZ1_9TELE8.800e-4164.96Dihydrolipoamide acetyltransferase component of py... [more]
A0A0S7K361_9TELE1.650e-4064.10ODB2 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A8B6ZJS8_ORYAF1.780e-4063.25lipoamide acyltransferase component of branched-ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9474contigL-elsbetiae_contig9474:963..2392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.4e-24
Seed eggNOG ortholog2880.D7FZ94
Preferred nameDBT
KEGG rclassRC00004,RC02727,RC02870
KEGG koko:K09699,ko:K11273,ko:K20166
KEGG ReactionR02662,R03174,R04097,R10998
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004147,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005947,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009295,GO:0009353,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0015980,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0019899,GO:0030062,GO:0030523,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0032991,GO:0040019,GO:0042304,GO:0042645,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0045723,GO:0045834,GO:0045923,GO:0045995,GO:0046662,GO:0046889,GO:0046890,GO:0048518,GO:0048520,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051094,GO:0051239,GO:0051240,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0072350,GO:0080090,GO:0097458,GO:0098798,GO:0120025,GO:1901046,GO:1902494,GO:1990204,GO:1990234,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
EggNOG OGsCOG0508@1,KOG0558@2759
EC2.3.1.168,3.6.4.13
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03036,ko04131
Exons3
Model size698
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9474.18459.1prot_L-elsbetiae_contig9474.18459.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9474 1090..1269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.675815-UTR-L-elsbetiae_contig9474:962..10891622817014.675815-UTR-L-elsbetiae_contig9474:962..1089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 963..1089 -
1691683983.7785993-UTR-L-elsbetiae_contig9474:962..10891691683983.7785993-UTR-L-elsbetiae_contig9474:962..1089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 963..1089 -
1622817014.6990213-UTR-L-elsbetiae_contig9474:1269..12931622817014.6990213-UTR-L-elsbetiae_contig9474:1269..1293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 1270..1293 -
1691683983.8098016-UTR-L-elsbetiae_contig9474:1269..12931691683983.8098016-UTR-L-elsbetiae_contig9474:1269..1293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 1270..1293 -
1622817014.711433-UTR-L-elsbetiae_contig9474:1651..17121622817014.711433-UTR-L-elsbetiae_contig9474:1651..1712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 1652..1712 -
1691683983.8180916-UTR-L-elsbetiae_contig9474:1651..17121691683983.8180916-UTR-L-elsbetiae_contig9474:1651..1712Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 1652..1712 -
1622817014.721994-UTR-L-elsbetiae_contig9474:2086..23921622817014.721994-UTR-L-elsbetiae_contig9474:2086..2392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 2087..2392 -
1691683983.8262131-UTR-L-elsbetiae_contig9474:2086..23921691683983.8262131-UTR-L-elsbetiae_contig9474:2086..2392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9474 2087..2392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.6886828-CDS-L-elsbetiae_contig9474:1089..12691622817014.6886828-CDS-L-elsbetiae_contig9474:1089..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9474 1090..1269 -
1691683983.8004966-CDS-L-elsbetiae_contig9474:1089..12691691683983.8004966-CDS-L-elsbetiae_contig9474:1089..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9474 1090..1269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9474.18459.1

>prot_L-elsbetiae_contig9474.18459.1 ID=prot_L-elsbetiae_contig9474.18459.1|Name=mRNA_L-elsbetiae_contig9474.18459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MQRVPRFDPVDTDKVVAARVFPVSWSADHRVVDGGTLARFSNTWKAYLEN
PALMLADAR*
back to top

mRNA from alignment at L-elsbetiae_contig9474:963..2392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9474.18459.1 ID=mRNA_L-elsbetiae_contig9474.18459.1|Name=mRNA_L-elsbetiae_contig9474.18459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1430bp|location=Sequence derived from alignment at L-elsbetiae_contig9474:963..2392- (Laminarionema elsbetiae ELsaHSoW15)
CCTGGTTCTAGCTAGCGTCAGCTGGATCCGTTTCTGCATAACTGTTCGAG CTGGTACCATGTGAGGCTTAATCGAACCCACTTTCTCGGTTGCCTGGTAA CGCGTTTTACCCATCTTCCCTCTCGCCTCTTGCCGAACGAGTTCACTCCC ACATCGTGCTGACATCGTTGTTTTCCTCGTGCATACCCACATACATGCGT ATCGACGGCTTTACTCTTTCAAACATCCTCAGGAGCTGAACACCCTTCAG AAGCTCGGGGCGGCCGGGAAGCTTGGAGAGGCGGAACTTACCGGAACAAC CTTCACGTGAGACGAGACGAGGAGGAACAACCCAAGCCGACGACGCGGCG TTTGTGCAACAGGGGGGGGAGGCTAGCTGTTCTGATATTAAGTGTTATTC CCTCTCATGTCGCAACAGCTGGCGTACGCTATGTAGGTGATTTTCGCTCA TTGCGAGGTTTTGATGCACCGACGAATGGAGCTTGCAACGCGTGCGCACG ATACAGTAGTTCAGAGATTTGCACATGTGGAACTGGCCTATCTTCCCCGC AGAAGGGAGATATCTATATGGTTCTGGTCCAGCTATTGCTTCTTCGGCGT GTTTTTGCTAGTAAAAACACGATTTTTGAGTGATGACGCCAGTCTGATTG AACTCCAACCGTTTTTGTATGGTATGGCAGGCTTTCCAATATCGGAAGCA TCGGCGGCACCTACGCATCGCCCGTTCTTCTCCACCCACAGGTCAGGGCC TCTACTCCCCCCCCCAACCAGTAGTTGCATCGCACACCACAGTAGCGAAT GCTGTACCTACAATCTTTTTGCAACCCCGCCCCTCCTTCCAGCTCTAGCC CTGTCGAAACAACGTGTTGAAAGCCGTCGCAGGTCTACCGTAGACAAGAA CATCCCACAATGTATTCATGGTAGGTCCATTTTTCTGTTGTGGCATCGGC ACTCTACGGGGCGTGTATTTTGCGCGTGCCTCCAATCCAACTCGCCGATT TCGATGTCGTCCATCCCAGCCGGCGGAAACCCCTGCCGTTGCCGGCGCCC ACACCTTCCAATAACGCCACCCCCCCCCCCCCCCCTGCCCTTGTTTCAGG TCTGCATCGGGGCCCTTGGGCGGATGCAGCGCGTGCCCCGCTTCGACCCC GTGGACACCGACAAGGTCGTGGCCGCCAGGGTGTTCCCCGTGTCTTGGTC GGCCGACCACCGCGTCGTGGACGGGGGCACGCTCGCTCGGTTCTCCAACA CCTGGAAGGCGTACTTGGAGAACCCCGCGCTCATGCTTGCTGATGCGCGC TGAATTGCGGCCTGGGCTGTTGTTCTTGGCTGCGCCGGGGGGAGCTGAGG TATTTACTGAGCGACTGACGGCTGTTGGGGGCACGATTTCTGCCCCCCCC CCCCCCTCCGCGCGCTTTGCGTCTCGGAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9474:963..2392-

>mRNA_L-elsbetiae_contig9474.18459.1 ID=mRNA_L-elsbetiae_contig9474.18459.1|Name=mRNA_L-elsbetiae_contig9474.18459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig9474:963..2392- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGCGTGCCCCGCTTCGACCCCGTGGACACCGACAAGGTCGTGGC
CGCCAGGGTGTTCCCCGTGTCTTGGTCGGCCGACCACCGCGTCGTGGACG
GGGGCACGCTCGCTCGGTTCTCCAACACCTGGAAGGCGTACTTGGAGAAC
CCCGCGCTCATGCTTGCTGATGCGCGCTGAATGCAGCGCGTGCCCCGCTT
CGACCCCGTGGACACCGACAAGGTCGTGGCCGCCAGGGTGTTCCCCGTGT
CTTGGTCGGCCGACCACCGCGTCGTGGACGGGGGCACGCTCGCTCGGTTC
TCCAACACCTGGAAGGCGTACTTGGAGAACCCCGCGCTCATGCTTGCTGA
TGCGCGCTGA
back to top