mRNA_L-elsbetiae_contig9459.18446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9459.18446.1
Unique NamemRNA_L-elsbetiae_contig9459.18446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9459.18446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9459contigL-elsbetiae_contig9459:281..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9459.18446.1prot_L-elsbetiae_contig9459.18446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9459 300..1563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.2966354-UTR-L-elsbetiae_contig9459:280..2991622817013.2966354-UTR-L-elsbetiae_contig9459:280..299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9459 281..299 +
1691683982.686008-UTR-L-elsbetiae_contig9459:280..2991691683982.686008-UTR-L-elsbetiae_contig9459:280..299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9459 281..299 +
1622817013.3353562-UTR-L-elsbetiae_contig9459:1563..16421622817013.3353562-UTR-L-elsbetiae_contig9459:1563..1642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9459 1564..1642 +
1691683982.725444-UTR-L-elsbetiae_contig9459:1563..16421691683982.725444-UTR-L-elsbetiae_contig9459:1563..1642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9459 1564..1642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817013.309594-CDS-L-elsbetiae_contig9459:299..3321622817013.309594-CDS-L-elsbetiae_contig9459:299..332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 300..332 +
1691683982.6993947-CDS-L-elsbetiae_contig9459:299..3321691683982.6993947-CDS-L-elsbetiae_contig9459:299..332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 300..332 +
1622817013.3235285-CDS-L-elsbetiae_contig9459:1260..15631622817013.3235285-CDS-L-elsbetiae_contig9459:1260..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 1261..1563 +
1691683982.714082-CDS-L-elsbetiae_contig9459:1260..15631691683982.714082-CDS-L-elsbetiae_contig9459:1260..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9459 1261..1563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9459.18446.1

>prot_L-elsbetiae_contig9459.18446.1 ID=prot_L-elsbetiae_contig9459.18446.1|Name=mRNA_L-elsbetiae_contig9459.18446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MVLPTTMSAGRRRRQEATTTGQKTGDIPARGRIAAVHRAPRTTRRFDRSA
EKWAAAGRDGNECRVQALSVAALPGNKIVTGRVSVYVCLSVCLSGLVRRT
LFVRQARIARA*
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mRNA from alignment at L-elsbetiae_contig9459:281..1642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9459.18446.1 ID=mRNA_L-elsbetiae_contig9459.18446.1|Name=mRNA_L-elsbetiae_contig9459.18446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig9459:281..1642+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCTTGGGCGCAGCAGCATGGTGCTGCCGACTACGATGTCGGCCGGAC
GGGTGAGAAGCCGGAGGGGGGAAGGACACGAGAGAAGATCGTTGCACTTC
GTATCACAATCTAAATAGTGTGTTTTTTTGTTCATTTTTTGTGTTGGATG
ATGGGTGGGGGGGGCTACGTGAATGTATTATTTGTTTTTTTTTCTATGTG
AGAACGGGTTTTGCAGCACTCCTCTCAGGACGAGACGCATTTTCTTTCTC
AGGCAGGTGGGTTTGATGTACTCGGTACGATTTTGCGGGTCGTGGGAGGT
GTATTCAGCTCTATCCCCCGCGGAATCTACGCAGTCTTTGTAGCCGCAGG
AACGCTGCTGTTTTGTTCATTGTCCAGTATCGGCATGTTCAGCGCTAGTC
CGGCCGAGAACGGCGCTCGTCCGCTGATGGCGAAAAATGGAAAACAAAAA
AAGGTTGAAAAAAAATACCTGCCGTACACATCAGCACGGCGTCCCTTCAA
ACCCGCTGCGGGTGTCTGGAGTTGATGAAAAGGCATACTATACCCCGGCA
AAATATGTGTGTGCAGCCTCTTGTTTTCTTGCCCCCCTGCGAAATGGTGT
CTTTCGTAGCCCGTAAGCCATAAATCGGCTTATCGTACATACATATGTAT
GTAGAAGTAGTAGTATGTATGTAGTGTTGCATCTCAGGCGGAGCCCCCCC
ACTTTTTATTCGCTGCACCCTGACCGTTAACCAGGCTGCATGATGTTGAC
GCTACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGCGCGGGGGAGGGGNNNNNNNNNN
CCCCCCCTTTTTATTCCCGGCCCCCTCACCGTTTACCCGGCTGGATGGTT
TTTCCGCCCCCCCCCCCCCCCCCCCGCCGCCGCCGCCGCCGCCGCCGCCG
CACGCCTGCGCTACCTACCGTCAACAACAGCGTCGGAGGCAGGAGGCGAC
CACGACAGGGCAGAAGACGGGAGACATCCCCGCCCGGGGACGAATAGCCG
CCGTACACCGGGCACCCAGGACTACTCGCCGTTTTGACCGCTCGGCCGAG
AAGTGGGCGGCTGCCGGGCGCGATGGCAATGAATGTCGCGTGCAAGCTCT
CTCCGTAGCGGCCCTGCCCGGCAACAAAATTGTAACCGGTCGCGTCTCTG
TATATGTGTGTCTGTCTGTCTGTCTGTCCGGTTTGGTTCGACGGACGTTG
TTCGTTCGGCAAGCACGCATTGCGCGTGCCTAGCGAATGGTGGCGGTTTT
TGTGTGGTGGTGCGGTTGTGTTCATTCACTGATACTGATTTATTTTACTA
ACGTGGTTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9459:281..1642+

>mRNA_L-elsbetiae_contig9459.18446.1 ID=mRNA_L-elsbetiae_contig9459.18446.1|Name=mRNA_L-elsbetiae_contig9459.18446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig9459:281..1642+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGCCGACTACGATGTCGGCCGGACGGATGGTGCTGCCGACTAC
GATGTCGGCCGGACGGCGTCGGAGGCAGGAGGCGACCACGACAGGGCAGA
AGACGGGAGACATCCCCGCCCGGGGACGAATAGCCGCCGTACACCGGGCA
CCCAGGACTACTCGCCGTTTTGACCGCTCGGCCGAGAAGTGGGCGGCTGC
CGGGCGCGATGGCAATGAATGTCGCGTGCAAGCTCTCTCCGTAGCGGCCC
TGCCCGGCAACAAAATTGTAACCGGTCGCGTCTCTGTATATGTGTGTCTG
TCTGTCTGTCTGTCCGGTTTGGTTCGACGGACGTTGTTCGTTCGGCAAGC
ACGCATTGCGCGTGCCTAGCGTCGGAGGCAGGAGGCGACCACGACAGGGC
AGAAGACGGGAGACATCCCCGCCCGGGGACGAATAGCCGCCGTACACCGG
GCACCCAGGACTACTCGCCGTTTTGACCGCTCGGCCGAGAAGTGGGCGGC
TGCCGGGCGCGATGGCAATGAATGTCGCGTGCAAGCTCTCTCCGTAGCGG
CCCTGCCCGGCAACAAAATTGTAACCGGTCGCGTCTCTGTATATGTGTGT
CTGTCTGTCTGTCTGTCCGGTTTGGTTCGACGGACGTTGTTCGTTCGGCA
AGCACGCATTGCGCGTGCCTAG
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