mRNA_L-elsbetiae_contig941.18402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig941.18402.1
Unique NamemRNA_L-elsbetiae_contig941.18402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig941.18402.1 vs. uniprot
Match: A0A6H5LDU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 7.540e-71
Identity = 141/193 (73.06%), Postives = 152/193 (78.76%), Query Frame = 3 
Query:   51 LGHEDADGSGGGXXXXXXMTGGRMSPLSAGVGGRVGA-TWGGLGSPSATGYAAPSPTGAPRTLPPAALAAA-VVREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFRSVQDKVKTASGGLDEAP-------SADKPATGAMHPLMASKRGSRSISSPALTQFADYAEQLPRLQTPPFKRRKSVSSFV 602
            LG ++A+G G     XXX + GRMSPL           TWGGLGSPS  G+AAPSPTGAPRTLPPAALAAA V+REGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFF+SV DKVKTAS  L E         S ++   GAMHPLMASKRG RSISSPALTQFA+YAEQLPRLQTPPFKRRKSV+SFV
Sbjct:  432 LGQDNAEGGG----EXXXASSGRMSPLGRXXXXXXXXXTWGGLGSPSGAGFAAPSPTGAPRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXPASPEETGKGAMHPLMASKRGFRSISSPALTQFANYAEQLPRLQTPPFKRRKSVASFV 620
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BLAST of mRNA_L-elsbetiae_contig941.18402.1 vs. uniprot
Match: D8LR84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.260e-49
Identity = 95/118 (80.51%), Postives = 97/118 (82.20%), Query Frame = 3 
Query:  270 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFRSVQDKVKTASGGLDEAP-------SADKPATGAMHPLMASKRGSRSISSPALTQFADYAEQLPRLQTPPFKRRKSVSSFV 602
            EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFF+SV DKVKTAS  L E         S D    G MHPLMASKRG RSISSPALTQFA YAEQLPRLQTPPFKRRKSV+SFV
Sbjct:  351 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASPDATGKGGMHPLMASKRGFRSISSPALTQFAHYAEQLPRLQTPPFKRRKSVASFV 468
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig941.18402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDU4_9PHAE7.540e-7173.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR84_ECTSI1.260e-4980.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig941contigL-elsbetiae_contig941:6792..8088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue2.9e-42
Seed eggNOG ortholog2880.D8LR84
Preferred nameDCAF7
KEGG koko:K11805
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
EggNOG free text desc.epidermal cell fate specification
EggNOG OGsKOG0290@1,KOG0290@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-06_003520.3
Exons2
Model size649
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig941.18402.1prot_L-elsbetiae_contig941.18402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig941 6896..8044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.6439815-UTR-L-elsbetiae_contig941:6791..68951622817009.6439815-UTR-L-elsbetiae_contig941:6791..6895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig941 6792..6895 +
1691683980.017967-UTR-L-elsbetiae_contig941:6791..68951691683980.017967-UTR-L-elsbetiae_contig941:6791..6895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig941 6792..6895 +
1622817009.6878266-UTR-L-elsbetiae_contig941:8044..80881622817009.6878266-UTR-L-elsbetiae_contig941:8044..8088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig941 8045..8088 +
1691683980.0601234-UTR-L-elsbetiae_contig941:8044..80881691683980.0601234-UTR-L-elsbetiae_contig941:8044..8088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig941 8045..8088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.6565764-CDS-L-elsbetiae_contig941:6895..72191622817009.6565764-CDS-L-elsbetiae_contig941:6895..7219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 6896..7219 +
1691683980.0355518-CDS-L-elsbetiae_contig941:6895..72191691683980.0355518-CDS-L-elsbetiae_contig941:6895..7219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 6896..7219 +
1622817009.67184-CDS-L-elsbetiae_contig941:7867..80441622817009.67184-CDS-L-elsbetiae_contig941:7867..8044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 7868..8044 +
1691683980.0463321-CDS-L-elsbetiae_contig941:7867..80441691683980.0463321-CDS-L-elsbetiae_contig941:7867..8044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 7868..8044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig941.18402.1

>prot_L-elsbetiae_contig941.18402.1 ID=prot_L-elsbetiae_contig941.18402.1|Name=mRNA_L-elsbetiae_contig941.18402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MTGGRMSPLSAGVGGRVGATWGGLGSPSATGYAAPSPTGAPRTLPPAALA
AAVVREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFRSVQDKVK
TASGGLDEAPSADKPATGAMHPLMASKRGSRSISSPALTQFADYAEQLPR
LQTPPFKRRKSVSSFV*
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mRNA from alignment at L-elsbetiae_contig941:6792..8088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig941.18402.1 ID=mRNA_L-elsbetiae_contig941.18402.1|Name=mRNA_L-elsbetiae_contig941.18402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1297bp|location=Sequence derived from alignment at L-elsbetiae_contig941:6792..8088+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCCCGGGTCCTTGGCGGGCTCTGGCGACACCGACGACAGCGGGAGC
CTCGGACACGAGGACGCGGACGGGAGCGGCGGTGGCTGCGGCGGCGGCGG
TGGAATGACCGGAGGCCGCATGTCCCCGCTCTCCGCCGGGGTGGGTGGAC
GGGTGGGAGCGACATGGGGGGGGCTTGGGAGCCCCTCTGCCACGGGGTAC
GCCGCGCCGTCTCCGACGGGGGCACCACGGACATTGCCTCCGGCGGCGCT
AGCGGCGGCCGTGGTCAGGGAGGGGAGCGGCAGCGGCGCCCGGTCCCCCA
CTTGGCCGTTACCGCGAGTTATCCCCGAGGGATCGGAGATATCGGACCAG
GACGCCGGCGGCTTGCTGATCGATTTTTTCCGGTCAGTGCAGGACAAGGT
CAAGACCGCCTCCGGCGGGCTCGATGAGGTGAGACGGCTGTCCTTGTGAG
GCGAGACTGCTGTCCTTGTGAGGCGGGATTGCTGTCCTTGTGAGGCGGGA
TTGCTGTGCTTGTGAGGAGGGATTGCTGTGATAAGGCGGAGACAATAATG
AGTGGTTTCTGTCTCGAAAGTGTCCGTCTCCACCCCAGGGCCGCAGCTCA
GCAGAAGTTTTGTCGGCGAGGAGGAAGGGGGGGCGGCGCTTCTTCGCCGC
CGATGGGACGCAAGTTTTTTTTCTCTTGGATCTGTGTGGTGTCTTCTCGA
TGAAAAAAAACGTTTTGGTGGGGGAGAGGAGAAAACCTCGTGGTTTTTGT
GGTGTTTTACGCCGGACATGGGATTTGGTTGTCCTTAGCCCTAGTTTAAC
TCTGAACCTGCTGGGGAGAGTTTTGTGCTTTGCGAATCTCGCCTCCGGCT
TGGCGCTCTTTTGTTTATAATACGTATGTACTGCCAGTCGCATACATGAG
TTGTTGGTTGTTTGGCTTGTCTTGCTTTCTCTCCCTCCTGCTCCCGCCGG
GTGATGTGTTCTTTGCCTCTCCATCTACCGCTCCCTATCCCTCTCCCCCT
CCCCCACTCCCGCCAGCTCCTCATCTCTACCGCGTCTTTCGCCCATACCT
CCTTCCCCCCCCCCCGGGACCCCCAGGCCCCGTCCGCCGACAAGCCCGCC
ACGGGAGCGATGCACCCGCTCATGGCCAGCAAGCGAGGCTCCCGCTCCAT
CTCGTCCCCGGCACTCACCCAGTTCGCCGACTACGCGGAGCAGCTGCCGA
GGCTCCAGACGCCCCCGTTCAAGCGGAGGAAAAGCGTCTCGAGCTTCGTG
TGAGTTGGAAGGAGGAGGAGGAGGAGGAGGCGAAGGGGAGACGCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig941:6792..8088+

>mRNA_L-elsbetiae_contig941.18402.1 ID=mRNA_L-elsbetiae_contig941.18402.1|Name=mRNA_L-elsbetiae_contig941.18402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig941:6792..8088+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGAGGCCGCATGTCCCCGCTCTCCGCCGGGGTGGGTGGACGGGT
GGGAGCGACATGGGGGGGGCTTGGGAGCCCCTCTGCCACGGGGTACGCCG
CGCCGTCTCCGACGGGGGCACCACGGACATTGCCTCCGGCGGCGCTAGCG
GCGGCCGTGGTCAGGGAGGGGAGCGGCAGCGGCGCCCGGTCCCCCACTTG
GCCGTTACCGCGAGTTATCCCCGAGGGATCGGAGATATCGGACCAGGACG
CCGGCGGCTTGCTGATCGATTTTTTCCGGTCAGTGCAGGACAAGGTCAAG
ACCGCCTCCGGCGGGCTCGATGAGATGACCGGAGGCCGCATGTCCCCGCT
CTCCGCCGGGGTGGGTGGACGGGTGGGAGCGACATGGGGGGGGCTTGGGA
GCCCCTCTGCCACGGGGTACGCCGCGCCGTCTCCGACGGGGGCACCACGG
ACATTGCCTCCGGCGGCGCTAGCGGCGGCCGTGGTCAGGGAGGGGAGCGG
CAGCGGCGCCCGGTCCCCCACTTGGCCGTTACCGCGAGTTATCCCCGAGG
GATCGGAGATATCGGACCAGGACGCCGGCGGCTTGCTGATCGATTTTTTC
CGGTCAGTGCAGGACAAGGTCAAGACCGCCTCCGGCGGGCTCGATGAGGC
CCCGTCCGCCGACAAGCCCGCCACGGGAGCGATGCACCCGCTCATGGCCA
GCAAGCGAGGCTCCCGCTCCATCTCGTCCCCGGCACTCACCCAGTTCGCC
GACTACGCGGAGCAGCTGCCGAGGCTCCAGACGCCCCCGTTCAAGCGGAG
GAAAAGCGTCTCGAGCTTCGTGTGAGCCCCGTCCGCCGACAAGCCCGCCA
CGGGAGCGATGCACCCGCTCATGGCCAGCAAGCGAGGCTCCCGCTCCATC
TCGTCCCCGGCACTCACCCAGTTCGCCGACTACGCGGAGCAGCTGCCGAG
GCTCCAGACGCCCCCGTTCAAGCGGAGGAAAAGCGTCTCGAGCTTCGTGT
GA
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