mRNA_L-elsbetiae_contig941.18401.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig941.18401.1
Unique NamemRNA_L-elsbetiae_contig941.18401.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig941.18401.1 vs. uniprot
Match: A0A6H5LDU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.130e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:  175 SSRSPSPGAHGPHSACDDSAPHPEGSPGRR-SAWEREEEGYGHYDPMDQSPSGADTDGDSTNGSPPHTAPYTG 390
            SSRSPSPGAHGPHSACDDSAPHPEGSPG R S+WE  EEGYGHYDPMDQSPSGADTDGDS N SPPHTA + G
Sbjct:  326 SSRSPSPGAHGPHSACDDSAPHPEGSPGGRPSSWE--EEGYGHYDPMDQSPSGADTDGDS-NDSPPHTASFAG 395
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig941.18401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDU4_9PHAE5.130e-2886.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig941contigL-elsbetiae_contig941:6053..6483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size433
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.5448482-CDS-L-elsbetiae_contig941:6052..64811622817009.5448482-CDS-L-elsbetiae_contig941:6052..6481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 6053..6481 +
1691683979.9597194-CDS-L-elsbetiae_contig941:6052..64811691683979.9597194-CDS-L-elsbetiae_contig941:6052..6481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig941 6053..6481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig941.18401.1prot_L-elsbetiae_contig941.18401.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig941 6053..6481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig941.18401.1

>prot_L-elsbetiae_contig941.18401.1 ID=prot_L-elsbetiae_contig941.18401.1|Name=mRNA_L-elsbetiae_contig941.18401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
AASARRSAELAAAVAAAATRGVPMKNININSNNANTNTNNTAGGGGGGGA
GERLGRTGSSRSPSPGAHGPHSACDDSAPHPEGSPGRRSAWEREEEGYGH
YDPMDQSPSGADTDGDSTNGSPPHTAPYTGGGGGGGGGGYGEC
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mRNA from alignment at L-elsbetiae_contig941:6053..6483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig941.18401.1 ID=mRNA_L-elsbetiae_contig941.18401.1|Name=mRNA_L-elsbetiae_contig941.18401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=431bp|location=Sequence derived from alignment at L-elsbetiae_contig941:6053..6483+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCAAGCGCCCGAAGAAGCGCCGAGCTGGCGGCGGCGGTGGCGGCGGC
GGCGACCCGCGGCGTGCCCATGAAGAACATCAACATCAACAGCAATAACG
CCAACACCAACACCAACAACACCGCGGGCGGCGGCGGCGGTGGCGGCGCG
GGCGAGAGGCTGGGGCGAACAGGCTCGTCCCGGTCCCCGTCGCCGGGGGC
ACACGGGCCCCACTCGGCGTGCGACGACTCCGCGCCCCACCCGGAGGGAT
CCCCCGGGCGCCGGAGCGCGTGGGAGCGGGAGGAGGAGGGGTACGGCCAC
TACGACCCCATGGACCAGAGCCCCTCGGGCGCGGACACCGACGGGGACTC
CACCAACGGAAGCCCGCCGCACACGGCGCCGTACACCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTTACGGCGAGTGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig941:6053..6483+

>mRNA_L-elsbetiae_contig941.18401.1 ID=mRNA_L-elsbetiae_contig941.18401.1|Name=mRNA_L-elsbetiae_contig941.18401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig941:6053..6483+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCAAGCGCCCGAAGAAGCGCCGAGCTGGCGGCGGCGGTGGCGGCGGC
GGCGACCCGCGGCGTGCCCATGAAGAACATCAACATCAACAGCAATAACG
CCAACACCAACACCAACAACACCGCGGGCGGCGGCGGCGGTGGCGGCGCG
GGCGAGAGGCTGGGGCGAACAGGCTCGTCCCGGTCCCCGTCGCCGGGGGC
ACACGGGCCCCACTCGGCGTGCGACGACTCCGCGCCCCACCCGGAGGGAT
CCCCCGGGCGCCGGAGCGCGTGGGAGCGGGAGGAGGAGGGGTACGGCCAC
TACGACCCCATGGACCAGAGCCCCTCGGGCGCGGACACCGACGGGGACTC
CACCAACGGAAGCCCGCCGCACACGGCGCCGTACACCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTTACGGCGAGTGCGCCGCAAGCGCCCGAAGAAGC
GCCGAGCTGGCGGCGGCGGTGGCGGCGGCGGCGACCCGCGGCGTGCCCAT
GAAGAACATCAACATCAACAGCAATAACGCCAACACCAACACCAACAACA
CCGCGGGCGGCGGCGGCGGTGGCGGCGCGGGCGAGAGGCTGGGGCGAACA
GGCTCGTCCCGGTCCCCGTCGCCGGGGGCACACGGGCCCCACTCGGCGTG
CGACGACTCCGCGCCCCACCCGGAGGGATCCCCCGGGCGCCGGAGCGCGT
GGGAGCGGGAGGAGGAGGGGTACGGCCACTACGACCCCATGGACCAGAGC
CCCTCGGGCGCGGACACCGACGGGGACTCCACCAACGGAAGCCCGCCGCA
CACGGCGCCGTACACCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTTACG
GCGAGTGC
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