mRNA_L-elsbetiae_contig94.18394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig94.18394.1
Unique NamemRNA_L-elsbetiae_contig94.18394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig94.18394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig94contigL-elsbetiae_contig94:25551..30055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size646
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.9415653-UTR-L-elsbetiae_contig94:25550..255951622817008.9415653-UTR-L-elsbetiae_contig94:25550..25595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 25551..25595 -
1691683979.5167022-UTR-L-elsbetiae_contig94:25550..255951691683979.5167022-UTR-L-elsbetiae_contig94:25550..25595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 25551..25595 -
1622817008.9525268-UTR-L-elsbetiae_contig94:26087..261261622817008.9525268-UTR-L-elsbetiae_contig94:26087..26126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26088..26126 -
1691683979.5263011-UTR-L-elsbetiae_contig94:26087..261261691683979.5263011-UTR-L-elsbetiae_contig94:26087..26126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26088..26126 -
1622817008.966889-UTR-L-elsbetiae_contig94:26404..264731622817008.966889-UTR-L-elsbetiae_contig94:26404..26473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26405..26473 -
1691683979.535057-UTR-L-elsbetiae_contig94:26404..264731691683979.535057-UTR-L-elsbetiae_contig94:26404..26473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26405..26473 -
1622817008.9800966-UTR-L-elsbetiae_contig94:26915..269581622817008.9800966-UTR-L-elsbetiae_contig94:26915..26958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26916..26958 -
1691683979.5439937-UTR-L-elsbetiae_contig94:26915..269581691683979.5439937-UTR-L-elsbetiae_contig94:26915..26958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 26916..26958 -
1622817009.0606434-UTR-L-elsbetiae_contig94:29436..294771622817009.0606434-UTR-L-elsbetiae_contig94:29436..29477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 29437..29477 -
1691683979.6072676-UTR-L-elsbetiae_contig94:29436..294771691683979.6072676-UTR-L-elsbetiae_contig94:29436..29477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 29437..29477 -
1622817009.07277-UTR-L-elsbetiae_contig94:29925..300551622817009.07277-UTR-L-elsbetiae_contig94:29925..30055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 29926..30055 -
1691683979.6199481-UTR-L-elsbetiae_contig94:29925..300551691683979.6199481-UTR-L-elsbetiae_contig94:29925..30055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig94 29926..30055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.9977882-CDS-L-elsbetiae_contig94:26958..269901622817008.9977882-CDS-L-elsbetiae_contig94:26958..26990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 26959..26990 -
1691683979.5529177-CDS-L-elsbetiae_contig94:26958..269901691683979.5529177-CDS-L-elsbetiae_contig94:26958..26990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 26959..26990 -
1622817009.009871-CDS-L-elsbetiae_contig94:27551..276201622817009.009871-CDS-L-elsbetiae_contig94:27551..27620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 27552..27620 -
1691683979.5616403-CDS-L-elsbetiae_contig94:27551..276201691683979.5616403-CDS-L-elsbetiae_contig94:27551..27620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 27552..27620 -
1622817009.026416-CDS-L-elsbetiae_contig94:27946..279811622817009.026416-CDS-L-elsbetiae_contig94:27946..27981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 27947..27981 -
1691683979.5704014-CDS-L-elsbetiae_contig94:27946..279811691683979.5704014-CDS-L-elsbetiae_contig94:27946..27981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 27947..27981 -
1622817009.0369625-CDS-L-elsbetiae_contig94:28268..283611622817009.0369625-CDS-L-elsbetiae_contig94:28268..28361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 28269..28361 -
1691683979.5792089-CDS-L-elsbetiae_contig94:28268..283611691683979.5792089-CDS-L-elsbetiae_contig94:28268..28361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 28269..28361 -
1622817009.047353-CDS-L-elsbetiae_contig94:29386..294361622817009.047353-CDS-L-elsbetiae_contig94:29386..29436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 29387..29436 -
1691683979.590798-CDS-L-elsbetiae_contig94:29386..294361691683979.590798-CDS-L-elsbetiae_contig94:29386..29436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 29387..29436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig94.18394.1prot_L-elsbetiae_contig94.18394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig94 26959..29436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig94.18394.1

>prot_L-elsbetiae_contig94.18394.1 ID=prot_L-elsbetiae_contig94.18394.1|Name=mRNA_L-elsbetiae_contig94.18394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MSACLTASQCAAGSATLRLEGCGLTDDDLDDILACFASIGPQNLVDLRLL
EPVTTSVSNASRATPSSSSRSVCSRTPQPWCPSSCLIIGWNP*
back to top

mRNA from alignment at L-elsbetiae_contig94:25551..30055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig94.18394.1 ID=mRNA_L-elsbetiae_contig94.18394.1|Name=mRNA_L-elsbetiae_contig94.18394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4505bp|location=Sequence derived from alignment at L-elsbetiae_contig94:25551..30055- (Laminarionema elsbetiae ELsaHSoW15)
CTATTTCCCATTCCCCTCTCCCTCTCTACTGCGCGCGCCCTGTTGTACGC
CCTGCCAAAACCACCACGAGCCCCCTCTTCGGCCCCACCCGCGGCCCGCC
CTGCATCGGCGCCGGCTTCCTCGCCGCCAGGTGATCCTTGCCTATGCTCA
CTTGCTCAACCGTGGAGTACTTGCAGCAGGGATTCGTATATATATGCAGC
ACCGCAGTATTCGCACAAAAGCAAACCCCAATTGTTGTAGATACCCATCA
GGTAGGGGGGCCTTCTCAAGACCCCCGGGAGAGGGGGGTACTTACTTATA
CTTGGTCTTGAAGCCTATATGCTTTTCCGTATAGGATTAAGTATGCCTTG
TCTAACTTGCTGCTCCTGTAGCAAACCACGTTAGCCGCCGCCACTTTGGT
GACAACACGGTGGAACATTGTTGAGACATATTTCGAGCTTGCAGTGCCGT
GCAGCGTCGTTATTCCCACGTCGAACTCGACGTGGTTTCGAGCGTTCCAA
GAGCTAGCTCCTTGGCGCCTTCCGCTCATGTTTCTGCCATTCCGTGTTTG
TTTTTTCTGTGATGGCTTGCCCGTGAAGTACAAACCGAGGAGCCCACCAC
ACCAGCTCCTGCCGGGGCCATGAGCGCCTGTTTGACTGCCAGCCAGTGCG
CTGCTGGCAGCGCCACGCTGTAAGTTCGGGAAGGAATCTACCTTGGGGAA
ATATTCCGCGCTATGTACCATGCATCGAAGTACCCTGCTTCTTCGCGTCG
CACAATATTGATTGGTCGAAATTTGTACGTCGTCGGCATCGACTACAAAA
ATACTTTCTCTGTGCCACGAGTACAATCCGTTACGGTGGCAGATTGTATC
TCGCCAATGAAGTTGCCTACGATACTATATAGGCAGGGCTGCTGAAACGC
TGCAGAGACGGCGATTCTCATTTTAAATAAAAAGAGTCTAGTGTTGTACT
TCGTATTTGCCGAGAATTAGTGGGTCAAAATGACCAAATTCAGACAATTT
TTGACCAATTTTTGACCAATTTTTGACCGATTGTGATCGTTTTCGGCCGA
AACTTTGATGAATTTGGCATGTTTCCTGGCATATCGCGGAAGCTGCGTGG
CCAAGTGGTTTCGCACGAGCAATATACACCGTCTACCAGTATGTACCAAT
GCTGAAGCGGAAAACAGAGCAATGTTGGCGTTTTTTCGTTTACTTTTTGC
CATTTTGTCGGATTTCTTGTTTTCTTCTCTGTTTTCCGAAACAGGGTCGA
AAAACGGTAATTTGAAGGCGACTGTTATTTTTCTAGTCGTTCGGCCACCT
TGAATTGTGAGTGTGCAACAAGACCAATACCGGACTTCACCCGAAAAACG
CCAAGATTTCGATAAACACACCGAGAAAAGCATCGGGCAGTTGTCTGTGT
AATCATAAATATCGGACTTTTTACGTATGGCACAGAGGAAGTATGACTTG
AGAATGCTGCCCAACGGAACCAACTATGACCCCGAACAGCACAATGTTGA
GCCTTGATGTAGCACTGAGGCATTATGCGCAACACATCACGTCGAGCCAC
GGCAAGTCGGGAACACTCGCCTAGTGCAAGTGCTGTCTGTCATTATGGCA
CGCTGTAGATCAAGGCCGGCCATCCACAGCAATTGTCTCCCTTGTTGTGG
GTGCGGCAGCTGATCAGCTCTCCACGCCTGCTGCTCCGTTCCAGGAGGCT
CGAGGGCTGTGGATTAACGGATGATGACCTCGACGACATCTTGGCCTGCT
TCGCTAGCATCGGACCCCAAAACCTGGTCGATCTCCGGTGAGTAGTAAGT
TGTCGCGGCGTGGTAGTTTGCCAGGCGGACGAACAGCTACGGGCCACCTG
TAGGGCTTAGCCAATCCCTATTCCCACCCACACCCACTCCAGGCGCACGC
GCCGCCTAAGACGTCGTGAACATCATGCTACCCTACCGATCACAGAAGAT
GACATCCTTGCCGCGGAGTCAGACTGTGCATATTCCTGTACCATGTTGGA
GTTGCGCATGTGAACGCCCCGCCCCACCGACAACCAGCATTTGATCTCAA
CACTTGTTTTGGCGTCGAAACCAGGCTACTTGAACCGGTCACCACCAGCG
TTTCGAACGGTCTCGTGAACATCCCTGTTACATTCTTCGAGGGCATGGAC
AACCTCCAAAATTTGTGAGTGATATCCTGCCACCCGCCGCGCCCCGCCTG
TATAGTTGGGCGCAGGAGTGGAGTATAGGCACATTCCAGAGCGACGGACA
GTTGTCAATCATCCACCGGGAGGTTCGGTGTGACTTGCGCTTCCGGAAGT
ACCAATCCAGCAGATCGTACACCTCGTGGGGGTGCCCTCGGCTAAATCTC
ATACTTGCGACTGGCTTCTCCTGCCTCTGCATGCCGCATTGTGCTGTTGC
CCGCCCCCGTCATGGCTGTTGGGGCCTATCAGGAGCATCACGGGCCACTC
CATCGTCGAGTTCCCGTTCGGTCTGCTCGAGAACACCCCAGCCTTGGTGT
CCATGTAAGTGGCGACAAAAAACGTCCATGACACAATGAAGTACTTCCTT
CTACGCCGTTGACAATAGATACGGACCCTCTCCAACCTATGCTTTCATGG
AGCATATATTGTATGGTACTGCTTTATGTGCTATACTGCTTGTGAACGGT
CCTTCCTGTCTGGCCAGCTGAACTTCACGCAACAGCACATTTTTTTATAT
AGGACGGTTGTGATGTGGTCCTCCGCTGCATGCGATTCGAAACGAAATTG
GTCGCGCCAACCACCACTGCTGCTTATGTCGTGTCGTGCCCTGTGAAGTT
GGAGATCTCATTCTCGTTCTCTATTTGGAACGCCCGCACTTAAAACTACA
TTGTACATACACATGCTTGTGAAATCGCAATCACTTGATCGAGTAAATAG
AAGTGTATCTACACAAGCAAGGTGGTGGTGCGAGAAGCCGGAAACGAGGA
GCAATCGCGTAGCACGCTACACAAACCTCCGTGGTTTTAGATAGCTCTGA
CTGTCGCCGTGCGTCACCCACCTCGCGTGAATGCGTGGCCGCCCCCACTT
TGATTTTCTGTACAGCGAGCTGTCTGATAATCGGCTGGAATCCTTGAACA
TCGGGTTCTTCAATCAGTTCACACCCAATATCCAGAGCGTGTGAGTGCGG
AATCGATCGCTTGTATGGACGCGTTGATTGTGACTCTACTGCAAAACCCT
TTGCACATCCCGTGTTCGAGCGGTCGTCTCCGTAGGTCTTTCAAAGCGGT
ACAGAAGTAGCTACCGCGTCTGCCGTTCGTGCAGACGAAATGTCTTCCAC
ACGAGGCATTTGATGGCAATTAGAAATGCGTAGTGATGAGTTCTGTCATG
AAGAATAAACGCTCGCACCTTTTGCGGAGGTGGCCTGTAGACGATAGCCC
AGAGTTTGGCTAATAAATAGGATATGTTTTTTCGGGGTGATTCTCCGCTA
CGAGCACCGTATACGGGACATTTGCGGATGTGTTGGCATGCAACACGAAC
GCTGTGCATGTAAGCCCGCTCCCCGTTTAATATGTACCACGTGGCCTCCC
TGCGCCTTGTCGTTGCGGTCGTGGTGATCCAGGTTTATCGACGGCAACGC
CCTGAGCTCTCTGTCGTTTTTTCAATTCGACGACCTCCTTATCACTCGCA
TGTCAGTCATTTCCTCCAGGCCGCGTAGGTTGTGTGATCTTTGCTGCTGG
CTAATGGTCTTGGGAATCGTTTGATACCGTCGCGCGGAACCCATCTGTGG
TTGCGTTAGATACTTCAAATTTAGTAGCACCCGCATTTGTTGGTGACCGG
CAGCAAGGACATCACCCGCTGGGGTGTTACCCGTTGCTGCGGCGTTGCAA
CGCAGCCCGAAACACAAATGCCTGAAATTGCCGTGCATGAACCGTGCCTC
ATTTTCACCTATCTTGCGTTCCTTGGCAGCGACGCGTTCGGGAACATGTT
GGAGTGCTTCCCTCCTCTGTGAGTGCCATTTCTCGCTTGGCCTTAAACCG
TAGCCCAAGCTTCTCCGGAACCACCCCTAGACTTGAGTCCACCAAGGTCG
CTCCTAGACTAAATAGTGCGTACCTAGCTGACGCGTGCTATTTTCATCTT
TTCGTATTCGACGTTTTCGGTCGTTGGCCCGCTGTCCCCTTTGTTGGCTA
TTGCGCTTCCCCTTGCGGACATGGTTCGCTACCACCACATTTACTGTGAA
CAGCGAACGACGAACCCCAACATTCGGGGATATCTGAAACGGCGATAGCG
AATCAATTTTCGCCAAGTGTCTCGTTGCGTTCGTGACCACCCATGGAGCG
ATTTGTGCCTGGAGTGCTGACGCACTGTTTGTTAACGCTGGTTGGTTCCT
ACCTTGGGTATTCCTCGAGTATAAGACAGCGGCACGGTGGACCTGGGCGT
GTGTACTACGTAGTAGACTCTACCCTCTTCCCCCTTCTCTCGCCGCACTT
CGTCTACCAGGGATTCCGCGCTACCCTCCGCCGTCCTCAACCTCGGAGGG
ATCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig94:25551..30055-

>mRNA_L-elsbetiae_contig94.18394.1 ID=mRNA_L-elsbetiae_contig94.18394.1|Name=mRNA_L-elsbetiae_contig94.18394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig94:25551..30055- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCCTGTTTGACTGCCAGCCAGTGCGCTGCTGGCAGCGCCACGCT
ATGAGCGCCTGTTTGACTGCCAGCCAGTGCGCTGCTGGCAGCGCCACGCT
GAGGCTCGAGGGCTGTGGATTAACGGATGATGACCTCGACGACATCTTGG
CCTGCTTCGCTAGCATCGGACCCCAAAACCTGGTCGATCTCCGGAGGCTC
GAGGGCTGTGGATTAACGGATGATGACCTCGACGACATCTTGGCCTGCTT
CGCTAGCATCGGACCCCAAAACCTGGTCGATCTCCGGCTACTTGAACCGG
TCACCACCAGCGTTTCGAACGGCTACTTGAACCGGTCACCACCAGCGTTT
CGAACGCATCACGGGCCACTCCATCGTCGAGTTCCCGTTCGGTCTGCTCG
AGAACACCCCAGCCTTGGTGTCCATCATCACGGGCCACTCCATCGTCGAG
TTCCCGTTCGGTCTGCTCGAGAACACCCCAGCCTTGGTGTCCATCGAGCT
GTCTGATAATCGGCTGGAATCCTTGACGAGCTGTCTGATAATCGGCTGGA
ATCCTTGA
back to top