mRNA_L-elsbetiae_contig94.18392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig94.18392.1
Unique NamemRNA_L-elsbetiae_contig94.18392.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: D7G8S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S9_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.460e-48
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 MDNSSLTQSQREALRVEGFGPTTVHFIKNQGGWMFNLIFAHLLFWLFGFTALIDYGGERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMVVVVKAIRYDPNAD 342
            MDN+SLTQSQREAL V+GFGPT VHF+KN GGWMFNL+FAHLLFWLFGFTAL+++G                 +SGQIKSGPSGSGVGIITTLLMAV T+VVV KAIRYDPNA+
Sbjct:    1 MDNASLTQSQREALIVKGFGPTMVHFVKNNGGWMFNLVFAHLLFWLFGFTALLEFGYSD----------LNQDSSGQIKSGPSGSGVGIITTLLMAVGTLVVVAKAIRYDPNAE 104
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: A0A7S2KAR8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAR8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.540e-9
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   76 FIKNQGGWMFNLIFAHLLFWLFGFTALIDYGGERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMVVVVKAIRYD 330
            F+K+Q GW  N   AH+LFWL+GF  L +YG                S  G I SGP GSG GI+T L++ V ++V + K + ++
Sbjct:   10 FLKSQPGWALNFTLAHVLFWLYGFPDLSEYGYSN-----------TFSEQGNIPSGPLGSGGGIVTLLIVCVMSLVWLQKLVSHE 83
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: A0A6G0XHM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHM4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   64 TTVHFIKNQGGWMFNLIFAHLLFWLFGFTALIDYGGERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMVVVVKAIRYDPNAD 342
            T V +I++  GW FNL+ +++LFWL GF  + DYG             E    +G I SG  GSGV +IT +LM +  +V   + + +  + D
Sbjct:    7 TVVGYIQDNVGWGFNLVVSNILFWLTGFPTVRDYGYSS----------ENYDENGGIPSGGEGSGVFVITLVLMVICYIVYFGRMVTFLTSKD 89
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: A0A485KR65_9STRA (Aste57867_10737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR65_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.270e-5
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:   40 LRVEGFGPTTVHFIKNQGGWMFNLIFAHLLFWLFGFTALIDYGGERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMV 303
            +   G   T + +I +  GW FNLI +++LFWL GF  + DYG                  +G I SG  GSGV +IT +LM V  +V
Sbjct:    1 MTAHGPPRTVLGYILDNQGWGFNLIISNILFWLTGFPTVRDYGYSS----------TNYDENGGIPSGGEGSGVFVITLVLMIVCYLV 78
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: A0A024T7R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7R1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.730e-5
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1 
Query:   64 TTVHFIKNQGGWMFNLIFAHLLFWLFGFTALIDYG------GERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMV 303
            T V F+ +  GW FNL+ +++LFWL GF    DYG       E+GG                I SG  GSGV +IT +LM +  +V
Sbjct:   12 TVVAFVLDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGG----------------IPSGGEGSGVFVITLVLMLICYLV 81
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BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Match: A0A397AWI6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AWI6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 8.230e-5
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:   64 TTVHFIKNQGGWMFNLIFAHLLFWLFGFTALIDYG------GERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATMVVVVKAIRY 327
            T + +I++  GW FNL+ +++LFWL GF    DYG       E+GG                I SG  GSGV +IT +LM +  +V   + I +
Sbjct:   13 TVLAYIQDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGG----------------IASGGEGSGVFVITLVLMLICYLVYFGRMISF 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig94.18392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8S9_ECTSI1.460e-4871.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2KAR8_9STRA5.540e-938.82Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6G0XHM4_9STRA1.190e-634.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KR65_9STRA5.270e-536.36Aste57867_10737 protein n=1 Tax=Aphanomyces stella... [more]
A0A024T7R1_9STRA5.730e-537.21Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A397AWI6_9STRA8.230e-534.04Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig94contigL-elsbetiae_contig94:954..3052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue9.8e-37
Seed eggNOG ortholog2880.D7G8S9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1SW@1,2S92Y@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002860.1
Exons3
Model size351
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig94.18392.1prot_L-elsbetiae_contig94.18392.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig94 954..3052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.5603185-CDS-L-elsbetiae_contig94:953..9861622817008.5603185-CDS-L-elsbetiae_contig94:953..986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 954..986 -
1691683979.2197685-CDS-L-elsbetiae_contig94:953..9861691683979.2197685-CDS-L-elsbetiae_contig94:953..986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 954..986 -
1622817008.5728767-CDS-L-elsbetiae_contig94:1845..19471622817008.5728767-CDS-L-elsbetiae_contig94:1845..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 1846..1947 -
1691683979.2314875-CDS-L-elsbetiae_contig94:1845..19471691683979.2314875-CDS-L-elsbetiae_contig94:1845..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 1846..1947 -
1622817008.5838034-CDS-L-elsbetiae_contig94:2836..30521622817008.5838034-CDS-L-elsbetiae_contig94:2836..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 2837..3052 -
1691683979.240694-CDS-L-elsbetiae_contig94:2836..30521691683979.240694-CDS-L-elsbetiae_contig94:2836..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig94 2837..3052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig94.18392.1

>prot_L-elsbetiae_contig94.18392.1 ID=prot_L-elsbetiae_contig94.18392.1|Name=mRNA_L-elsbetiae_contig94.18392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MDNSSLTQSQREALRVEGFGPTTVHFIKNQGGWMFNLIFAHLLFWLFGFT
ALIDYGGERGGGGGSKPGREKGSASGQIKSGPSGSGVGIITTLLMAVATM
VVVVKAIRYDPNADLA*
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mRNA from alignment at L-elsbetiae_contig94:954..3052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig94.18392.1 ID=mRNA_L-elsbetiae_contig94.18392.1|Name=mRNA_L-elsbetiae_contig94.18392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2099bp|location=Sequence derived from alignment at L-elsbetiae_contig94:954..3052- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAACTCATCGCTAACGCAGTCCCAGCGGGAAGCCCTCCGCGTAGA
AGGGTTTGGCCCCACGACGGTGCATTTCATCAAGAACCAGGGGGGCTGGA
TGTTCAACCTCATCTTCGCGCACCTCCTCTTCTGGCTCTTCGGTTTCACG
GCGCTGATCGACTACGGGGGAGAGAGAGGGGGGGGGGGGGGGAGCAAGCC
GGGGCGTGAAAAAGGGGTGCTAAGTATGCCTACAACAGCAGTTCCTCTGG
AACGATTTCTTCGCAGACTGGACGTAAGACTGCTGACATTTGTATACTTT
GGTAAAAAAAGGGGTTCCGTGAGTGGCGTGTGGTTTTCTCGCGTCGCGTG
GGTAGATATGTCTGCAGTACATATCTTTGTATCTACGCACGACGACCCCA
CACCCGCGAAACCGTGCAATAAAAGTTTCACTGGTGAGCTGTCGTCTGGT
CTGATATGTAGCACTAGTAAGACGGCGATGATCAGGACCCCGGCCGGCCG
CGACCCTCTCGTTTTGCATGGCGACCCTCGCGTGCTCCTGCGCACGAAGC
GGAAGCTTATGTATATAGAAGTAAGTATGTATGTATCAGGGTGCTTCGGC
CGCCGGCCACTTTTGTTCGCCGCAAAGTAAGTTATTTGTGTCTCAGAGAG
AGAGGCTCTGGGGGGCAACAAGCGCGTTGACGATTTCCTTGCTCGGGCGC
CGCACGCCCAGCTTGTGCCGAAGGTACATTGTTGTTGTTATGTCCGCATT
AAAAACCGTTCCGATCTCTCTATCCAGAATTACCCTCATGAGTCCGCACT
TATCCAGCACTGACGCGGTCGATCAGTTCCAGTGGTGTGGTCACAGGATA
ACCTACCCTGAAAAGGGTGCTACACCGAAAAATGATACCTATTTATATGT
TTTTTTTTCTCTTGCACATGTTTGGCTTATTCGTCGTCCACTGTGGCCCC
CTTCCTCCACTACGACTGTCTAGACGACCCATATGTATGTGTTCTTTGTC
TGCTGTGCCTACGACTGGCTATTTAGATGACCCATATGTACAACTGTATG
GTGTTCCTTGTCTGCTGTGCCTGCCTACACGTGCAGGTACTCTGACCTGA
ACCAGAGTGCGTCTGGGCAGATCAAGTCGGGCCCGTCGGGGTCTGGGGTG
GGCATCATCACGACGCTGCTCATGGCCGTCGCTACCATGGTGGTGGTTGT
CAAGGCGGTAAGAACCGGCCGGCCGTTTGGTTTCTGTTGCGCCTTGTTAC
GTTGTTGTACATTTGTACGTACTAGAATTGAAGTATCGTGCCTACATCTG
TTTTGATGGATTTCTGGGTTTTCAACCCAACGCTTTAAAACAAACTCTTG
TGCGAGGGGGGGGGGTGGAGTTTGCGCGCGCGTAGCGTGTGTTAAGAGTT
TGGGGATGCCTTTGTGCCATTGGGGTGTGTCCGTCCTCCGTGTTGTGTTG
CTTGCGGTATGCCTACATAGGATACAAGTTGTCAACTGCTGCGGGCTGTT
CCTGCCTCTCAACTCTCCACGAAAATCGCCACGATGCACTCTGCTATTTT
GTAGCTTACATGAGGACCAACCAACATGATGAGTTTTGTTTTTCGTGTTG
TTTTCCCTCTCTCTCAACAAAACATATAAAAGTATAATCTAGATGCTTCC
AAGTGTTTCTGTGAGACGAGTCCGACAGAAGTTGTGTTTGTGGTCGGAAA
GAGTAGGTCGCCGAGGTGCGACACAAACTCCTTAGGGGAGATGAGAGGAA
GCACAACCCCCCCCCAGGGTGATGTACAACAGCTGAATGAATGGATTTCG
TACCATGGCGGCCGGGGGCACGGGGGCAGCGAGGGGGGGCTAGCTGGTGT
GCCCACCACAGAAGTACAGACTGCTCCCCCCTCCCGGGCTGATGTGTCTA
CCGCAGAGGTACAAACCGCTCCGCCCTCCCTCCTTCCTACAAACCGCTCC
GCCCTACCTCCTTCCTACCGCCGCCATCCCCTTATTTCTGCCTGTGCCTC
ACTCGTCTCCGTCTTCTCTTCCACCCTGCTCGCTGCTGCTGCTGCTGCTG
CCTTGCGTTTCTCCAGATCCGGTACGACCCGAATGCCGACCTCGCTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig94:954..3052-

>mRNA_L-elsbetiae_contig94.18392.1 ID=mRNA_L-elsbetiae_contig94.18392.1|Name=mRNA_L-elsbetiae_contig94.18392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig94:954..3052- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAACTCATCGCTAACGCAGTCCCAGCGGGAAGCCCTCCGCGTAGA
AGGGTTTGGCCCCACGACGGTGCATTTCATCAAGAACCAGGGGGGCTGGA
TGTTCAACCTCATCTTCGCGCACCTCCTCTTCTGGCTCTTCGGTTTCACG
GCGCTGATCGACTACGGGGGAGAGAGAGGGGGGGGGGGGGGGAGCAAGCC
GGGGCGTGAAAAAGGGATGGACAACTCATCGCTAACGCAGTCCCAGCGGG
AAGCCCTCCGCGTAGAAGGGTTTGGCCCCACGACGGTGCATTTCATCAAG
AACCAGGGGGGCTGGATGTTCAACCTCATCTTCGCGCACCTCCTCTTCTG
GCTCTTCGGTTTCACGGCGCTGATCGACTACGGGGGAGAGAGAGGGGGGG
GGGGGGGGAGCAAGCCGGGGCGTGAAAAAGGGAGTGCGTCTGGGCAGATC
AAGTCGGGCCCGTCGGGGTCTGGGGTGGGCATCATCACGACGCTGCTCAT
GGCCGTCGCTACCATGGTGGTGGTTGTCAAGGCGAGTGCGTCTGGGCAGA
TCAAGTCGGGCCCGTCGGGGTCTGGGGTGGGCATCATCACGACGCTGCTC
ATGGCCGTCGCTACCATGGTGGTGGTTGTCAAGGCGATCCGGTACGACCC
GAATGCCGACCTCGCTTAGATCCGGTACGACCCGAATGCCGACCTCGCTT
AG
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