mRNA_L-elsbetiae_contig9393.18387.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9393.18387.1
Unique NamemRNA_L-elsbetiae_contig9393.18387.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9393.18387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9393contigL-elsbetiae_contig9393:4148..5221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9393.18387.1prot_L-elsbetiae_contig9393.18387.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9393 4211..5221 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.1930501-UTR-L-elsbetiae_contig9393:4147..42101622817008.1930501-UTR-L-elsbetiae_contig9393:4147..4210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9393 4148..4210 -
1691683978.9610915-UTR-L-elsbetiae_contig9393:4147..42101691683978.9610915-UTR-L-elsbetiae_contig9393:4147..4210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9393 4148..4210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.2052922-CDS-L-elsbetiae_contig9393:4210..44421622817008.2052922-CDS-L-elsbetiae_contig9393:4210..4442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9393 4211..4442 -
1691683978.9727094-CDS-L-elsbetiae_contig9393:4210..44421691683978.9727094-CDS-L-elsbetiae_contig9393:4210..4442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9393 4211..4442 -
1622817008.2177827-CDS-L-elsbetiae_contig9393:5138..52211622817008.2177827-CDS-L-elsbetiae_contig9393:5138..5221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9393 5139..5221 -
1691683978.9828608-CDS-L-elsbetiae_contig9393:5138..52211691683978.9828608-CDS-L-elsbetiae_contig9393:5138..5221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9393 5139..5221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9393.18387.1

>prot_L-elsbetiae_contig9393.18387.1 ID=prot_L-elsbetiae_contig9393.18387.1|Name=mRNA_L-elsbetiae_contig9393.18387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
LGRKRGVEDVLETSGSTPSTNTLVPTDTRTFAEDELSDDPDDYQDGQTVA
GQNVETSGVDGHVLTCNRAFAAERLFEEDELSDDECSSVHNGAAVLRRTR
ALKK*
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mRNA from alignment at L-elsbetiae_contig9393:4148..5221-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9393.18387.1 ID=mRNA_L-elsbetiae_contig9393.18387.1|Name=mRNA_L-elsbetiae_contig9393.18387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig9393:4148..5221- (Laminarionema elsbetiae ELsaHSoW15)
TTGGGGAGGAAACGTGGCGTAGAGGACGTGCTGGAAACGTCAGGGTCCAC
GCCCTCGACAAATACATTGGTGCCGACGGATACGTAAGTCCCGTAGTTTG
TTTCTGTTGGAACTGAACCTGTGTGCCGCTGCTGGTAAGCTTCTGGTGAT
GTTCGAGAGAGCATCGATTGAGTGTACCCATACAAGGAACTTCACGTGGA
ATTGCTACTTATACCCCAAAAGTGTTTTGCTCGGGTCAGAGGAGAAGGAG
GGCGGGGTAGCACAACCCGCTAGCAAGGTATCAGAGGACCTTCCCATCAC
CGGGTATACCGGGGATTGAAAGGAAACATCCCCAGAGTCCTCGCACAAGA
CGCAAACTGTGCCAGACCAAGCTGTGGGGGGCGGCGGGCAGAGCTTCCGC
GGAACGCGTCCGCCTCGACCCCTTTTCGATCGCAGTTACAAATAACCACT
TTTTTTGAGGCTGCCCTCATGTGGCATATCTCTCCACAACAGGTTGAGCA
TCCTCCACGCTTTGCCATGCGCTGGTGCGAAAACATCCTATCAATAATTA
AATGTTGCGTCGGTTGAAAAGGAATGGGCGCACAACTCCGGAAATCTCCA
CTCTCGGGTAGATAGATGTACGTGGAACCTTGAACGCTTACTTCAAAGAA
TGTCATATAGATATCCTACCGTGCAAAAGATGTGGAACGCAGACTGGATA
ACGGAACTATGCACGCGCTGAAACTGATAGAAGGATTGGCATTGAGAAAA
TGAGCACACTTTACTTCTCCGGCACCCAGGAGAACATTTGCTGAAGATGA
GCTCAGTGACGATCCGGATGACTACCAGGATGGTCAAACCGTCGCGGGGC
AGAATGTGGAGACTTCAGGCGTAGACGGGCACGTTTTGACATGCAACAGG
GCTTTTGCTGCTGAACGTTTGTTTGAGGAAGACGAACTTAGCGACGATGA
GTGTTCGTCAGTACACAATGGGGCGGCGGTGTTGCGGCGTACGCGCGCGC
TTAAGAAATGAATGATACATGTGCGTTGATGTTTCTCACGAGACGTTGTG
TTGATTGAAAGTTACAGATACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9393:4148..5221-

>mRNA_L-elsbetiae_contig9393.18387.1 ID=mRNA_L-elsbetiae_contig9393.18387.1|Name=mRNA_L-elsbetiae_contig9393.18387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9393:4148..5221- (Laminarionema elsbetiae ELsaHSoW15)
TTGGGGAGGAAACGTGGCGTAGAGGACGTGCTGGAAACGTCAGGGTCCAC
GCCCTCGACAAATACATTGGTGCCGACGGATACTTGGGGAGGAAACGTGG
CGTAGAGGACGTGCTGGAAACGTCAGGGTCCACGCCCTCGACAAATACAT
TGGTGCCGACGGATACGAGAACATTTGCTGAAGATGAGCTCAGTGACGAT
CCGGATGACTACCAGGATGGTCAAACCGTCGCGGGGCAGAATGTGGAGAC
TTCAGGCGTAGACGGGCACGTTTTGACATGCAACAGGGCTTTTGCTGCTG
AACGTTTGTTTGAGGAAGACGAACTTAGCGACGATGAGTGTTCGTCAGTA
CACAATGGGGCGGCGGTGTTGCGGCGTACGCGCGCGCTTAAGAAATGAGA
GAACATTTGCTGAAGATGAGCTCAGTGACGATCCGGATGACTACCAGGAT
GGTCAAACCGTCGCGGGGCAGAATGTGGAGACTTCAGGCGTAGACGGGCA
CGTTTTGACATGCAACAGGGCTTTTGCTGCTGAACGTTTGTTTGAGGAAG
ACGAACTTAGCGACGATGAGTGTTCGTCAGTACACAATGGGGCGGCGGTG
TTGCGGCGTACGCGCGCGCTTAAGAAATGA
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