mRNA_L-elsbetiae_contig9392.18386.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9392.18386.1
Unique NamemRNA_L-elsbetiae_contig9392.18386.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: D7G7R7_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.190e-21
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 PRSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            PRSKHCDTCG+CILRFDHHCPFVANCVGQNNHR+F+GFLF
Sbjct:  409 PRSKHCDTCGRCILRFDHHCPFVANCVGQNNHRFFVGFLF 448
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A2C9K0F7_BIOGL (Palmitoyltransferase n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K0F7_BIOGL)

HSP 1 Score: 75.9 bits (185), Expect = 5.230e-15
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            RSKHC  C KC+ +FDHHCP+V NCVG NNHRYFIG+LF
Sbjct:  411 RSKHCSVCNKCVAKFDHHCPWVDNCVGANNHRYFIGYLF 449
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A4C1T018_EUMVA (Palmitoyltransferase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T018_EUMVA)

HSP 1 Score: 75.5 bits (184), Expect = 7.150e-15
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFL 117
            RSKHC  C +C+ RFDHHCP+V NC+G NNHRYFIGFL
Sbjct:  438 RSKHCSVCNRCVARFDHHCPWVGNCIGANNHRYFIGFL 475
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: D2A2T8_TRICA (Palmitoyltransferase n=3 Tax=Tenebrionidae TaxID=7065 RepID=D2A2T8_TRICA)

HSP 1 Score: 74.7 bits (182), Expect = 1.330e-14
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFL 117
            RSKHC  C KC+ RFDHHCP+VANC+G  NH+YFIGFL
Sbjct:  436 RSKHCSVCNKCVARFDHHCPWVANCIGAKNHKYFIGFL 473
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A7J7FEY9_DICBM (Palmitoyltransferase (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7J7FEY9_DICBM)

HSP 1 Score: 72.0 bits (175), Expect = 1.490e-14
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            RSKHC  C +CI +FDHHCP+V NCVG  NHRYF+G+LF
Sbjct:    6 RSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLF 44
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A336K7Y1_CULSO (Palmitoyltransferase n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336K7Y1_CULSO)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-14
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFL 117
            RSKHC  C KC+ RFDHHCP+V NC+G NNHR+FIGFL
Sbjct:  447 RSKHCSVCDKCVARFDHHCPWVGNCIGANNHRHFIGFL 484
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A7I8W6P1_9ANNE (Palmitoyltransferase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W6P1_9ANNE)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-14
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            RSKHC  C KC+ +FDHHCP+V NC+G NNH+YF+GFLF
Sbjct:  416 RSKHCSICNKCVAKFDHHCPWVDNCIGANNHKYFLGFLF 454
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: T1F1D2_HELRO (Palmitoyltransferase n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1F1D2_HELRO)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-14
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            RSKHC  C KC+ +FDHHCP+V NC+G NNH+YF+G+LF
Sbjct:  301 RSKHCAICNKCVAKFDHHCPWVGNCIGMNNHKYFVGYLF 339
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: UPI000BA7F361 (palmitoyltransferase ZDHHC17-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F361)

HSP 1 Score: 73.9 bits (180), Expect = 2.490e-14
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF 120
            RSKHC  C +CI RFDHHCP+V NC+G  NHRYF+G+LF
Sbjct:  444 RSKHCSICNRCIARFDHHCPWVGNCIGSGNHRYFVGYLF 482
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BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Match: A0A8J9UJA3_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9UJA3_9NEOP)

HSP 1 Score: 73.9 bits (180), Expect = 2.490e-14
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 RSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFL 117
            RSKHC  C +C+ +FDHHCP+VANC+G NNH+YF+GFL
Sbjct:  436 RSKHCSVCNRCVAKFDHHCPWVANCIGANNHQYFVGFL 473
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9392.18386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7R7_ECTSI4.190e-2192.50Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A2C9K0F7_BIOGL5.230e-1574.36Palmitoyltransferase n=1 Tax=Biomphalaria glabrata... [more]
A0A4C1T018_EUMVA7.150e-1573.68Palmitoyltransferase n=1 Tax=Eumeta variegata TaxI... [more]
D2A2T8_TRICA1.330e-1473.68Palmitoyltransferase n=3 Tax=Tenebrionidae TaxID=7... [more]
A0A7J7FEY9_DICBM1.490e-1469.23Palmitoyltransferase (Fragment) n=2 Tax=Amniota Ta... [more]
A0A336K7Y1_CULSO1.820e-1473.68Palmitoyltransferase n=1 Tax=Culicoides sonorensis... [more]
A0A7I8W6P1_9ANNE1.820e-1469.23Palmitoyltransferase n=1 Tax=Dimorphilus gyrocilia... [more]
T1F1D2_HELRO2.370e-1466.67Palmitoyltransferase n=1 Tax=Helobdella robusta Ta... [more]
UPI000BA7F3612.490e-1469.23palmitoyltransferase ZDHHC17-like n=1 Tax=Limulus ... [more]
A0A8J9UJA3_9NEOP2.490e-1468.42(lesser marbled fritillary) hypothetical protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9392contigL-elsbetiae_contig9392:665..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog2880.D7G7R7
Preferred nameZDHHC13
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000139,GO:0001505,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0006464,GO:0006497,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007276,GO:0007283,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0015833,GO:0016020,GO:0016079,GO:0016192,GO:0016234,GO:0016235,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0017156,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0019953,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030133,GO:0030660,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034220,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042802,GO:0042886,GO:0042953,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0044872,GO:0045055,GO:0045184,GO:0045202,GO:0046873,GO:0046903,GO:0046907,GO:0048232,GO:0048489,GO:0048518,GO:0048522,GO:0048609,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0055085,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0072511,GO:0090087,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903830,GO:1904951
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.1610246-CDS-L-elsbetiae_contig9392:664..7841622817008.1610246-CDS-L-elsbetiae_contig9392:664..784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9392 665..784 +
1691683978.9479635-CDS-L-elsbetiae_contig9392:664..7841691683978.9479635-CDS-L-elsbetiae_contig9392:664..784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9392 665..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9392.18386.1prot_L-elsbetiae_contig9392.18386.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9392 665..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9392.18386.1

>prot_L-elsbetiae_contig9392.18386.1 ID=prot_L-elsbetiae_contig9392.18386.1|Name=mRNA_L-elsbetiae_contig9392.18386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
PRSKHCDTCGKCILRFDHHCPFVANCVGQNNHRYFIGFLF
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mRNA from alignment at L-elsbetiae_contig9392:665..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9392.18386.1 ID=mRNA_L-elsbetiae_contig9392.18386.1|Name=mRNA_L-elsbetiae_contig9392.18386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=120bp|location=Sequence derived from alignment at L-elsbetiae_contig9392:665..784+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGCTCCAAGCACTGCGACACGTGCGGCAAGTGCATCCTCCGGTTCGA
CCACCACTGCCCCTTCGTGGCTAACTGCGTGGGGCAGAACAACCACCGAT
ATTTCATCGGGTTCCTCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9392:665..784+

>mRNA_L-elsbetiae_contig9392.18386.1 ID=mRNA_L-elsbetiae_contig9392.18386.1|Name=mRNA_L-elsbetiae_contig9392.18386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig9392:665..784+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGCTCCAAGCACTGCGACACGTGCGGCAAGTGCATCCTCCGGTTCGA
CCACCACTGCCCCTTCGTGGCTAACTGCGTGGGGCAGAACAACCACCGAT
ATTTCATCGGGTTCCTCTTTCCTCGCTCCAAGCACTGCGACACGTGCGGC
AAGTGCATCCTCCGGTTCGACCACCACTGCCCCTTCGTGGCTAACTGCGT
GGGGCAGAACAACCACCGATATTTCATCGGGTTCCTCTTT
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