mRNA_L-elsbetiae_contig9391.18384.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9391.18384.1
Unique NamemRNA_L-elsbetiae_contig9391.18384.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9391.18384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9391contigL-elsbetiae_contig9391:2582..3150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.08565-CDS-L-elsbetiae_contig9391:2581..28841622817008.08565-CDS-L-elsbetiae_contig9391:2581..2884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9391 2582..2884 +
1691683978.903632-CDS-L-elsbetiae_contig9391:2581..28841691683978.903632-CDS-L-elsbetiae_contig9391:2581..2884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9391 2582..2884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817008.0977664-UTR-L-elsbetiae_contig9391:2884..31501622817008.0977664-UTR-L-elsbetiae_contig9391:2884..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9391 2885..3150 +
1691683978.9140708-UTR-L-elsbetiae_contig9391:2884..31501691683978.9140708-UTR-L-elsbetiae_contig9391:2884..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9391 2885..3150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9391.18384.1prot_L-elsbetiae_contig9391.18384.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9391 2582..2884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9391.18384.1

>prot_L-elsbetiae_contig9391.18384.1 ID=prot_L-elsbetiae_contig9391.18384.1|Name=mRNA_L-elsbetiae_contig9391.18384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
AGHPVAALKHAVGTGSSRISLPCYYAYLGPCAAVVTGYSTRTVGRSVVQE
AQGHRLVETANTPAENALKQWRALVAVRASPLRHGCRLERRRSSNQLCHR
*
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mRNA from alignment at L-elsbetiae_contig9391:2582..3150+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9391.18384.1 ID=mRNA_L-elsbetiae_contig9391.18384.1|Name=mRNA_L-elsbetiae_contig9391.18384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:2582..3150+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCCACCCTGTTGCCGCATTGAAGCACGCAGTCGGAACTGGGAGTTC
TCGCATATCCCTCCCCTGCTATTACGCATACCTCGGCCCCTGCGCTGCTG
TAGTCACCGGTTACTCCACTCGCACCGTTGGTAGAAGTGTCGTCCAAGAG
GCTCAAGGTCATCGCCTGGTGGAAACCGCAAACACGCCCGCCGAAAACGC
TCTCAAACAGTGGAGGGCCCTCGTTGCAGTACGCGCAAGCCCCCTTCGTC
ACGGATGCCGCCTCGAACGGCGGCGGTCTAGCAACCAACTGTGCCATCGA
TGAGGCCGGGGCAGGAGAATACGTGCCGCCAACGACTGGCGCCATCCCAA
TAGTTCTGGGCGCCGAAGCCGTCTCTGCTGCCGCCTGCACCCTTCCTGCG
GCCGCCTCCGCCGTTGCTGCCGCCGCCGCCACCCTGCCCGCCGCTTGCTC
AGCCGCTACTACGGCCATCCGCGCAGCGAGCGCGAGCGCGTCCATTTCTT
GGTGCCAGGCTTGCTGTCTTTCCCTCGCTTGTTGTCGAGCTTCTGTAGCC
ATCTCACGGTCTGCTTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9391:2582..3150+

>mRNA_L-elsbetiae_contig9391.18384.1 ID=mRNA_L-elsbetiae_contig9391.18384.1|Name=mRNA_L-elsbetiae_contig9391.18384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig9391:2582..3150+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCCACCCTGTTGCCGCATTGAAGCACGCAGTCGGAACTGGGAGTTC
TCGCATATCCCTCCCCTGCTATTACGCATACCTCGGCCCCTGCGCTGCTG
TAGTCACCGGTTACTCCACTCGCACCGTTGGTAGAAGTGTCGTCCAAGAG
GCTCAAGGTCATCGCCTGGTGGAAACCGCAAACACGCCCGCCGAAAACGC
TCTCAAACAGTGGAGGGCCCTCGTTGCAGTACGCGCAAGCCCCCTTCGTC
ACGGATGCCGCCTCGAACGGCGGCGGTCTAGCAACCAACTGTGCCATCGA
TGAGCCGGCCACCCTGTTGCCGCATTGAAGCACGCAGTCGGAACTGGGAG
TTCTCGCATATCCCTCCCCTGCTATTACGCATACCTCGGCCCCTGCGCTG
CTGTAGTCACCGGTTACTCCACTCGCACCGTTGGTAGAAGTGTCGTCCAA
GAGGCTCAAGGTCATCGCCTGGTGGAAACCGCAAACACGCCCGCCGAAAA
CGCTCTCAAACAGTGGAGGGCCCTCGTTGCAGTACGCGCAAGCCCCCTTC
GTCACGGATGCCGCCTCGAACGGCGGCGGTCTAGCAACCAACTGTGCCAT
CGATGA
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