mRNA_L-elsbetiae_contig936.18354.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 209 bits (533), Expect = 5.870e-59 Identity = 143/316 (45.25%), Postives = 168/316 (53.16%), Query Frame = 2 Query: 8 MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPEDEICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADTE-------------AETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVVVEDSDDDD------------TPTGDF---TCDG----VANGDFCCSDGCGECGGSGCSNRGGGLTGNDCCTSDILASGRLCSDTRAAPCFL 859 MC GI GI +D +CC SCGSCGG GCSGRDGG S ACCGGGV A GR CS T APC+ + C GI GI A+D +CC SC SCGG+GCSGRDGG+D CCGGGV A GR CS + APC+V E A TC G+ G+ A DVCC SCGSCGG GCS RDGG + CCG + N CS + APC+V TP TC+G V + CC+ CG CGG GCS+R GG ++CC +I + CS T APC + Sbjct: 269 MCDGGIVGIQTSD-VCCSTSCGSCGGTGCSGRDGG-----SGACCGGGVRASGRYCSVTGEAPCMTVPK-------CDGGIVGIQASD-VCCSLSCESCGGSGCSGRDGGEDE-----CCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAAGTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDGGEDN-----CCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAAGTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDGGE--DNCCGVEIRTANLDCSVTGEAPCIV 558
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 200 bits (509), Expect = 9.420e-59 Identity = 124/225 (55.11%), Postives = 138/225 (61.33%), Query Frame = 2 Query: 5 EMCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPE----------DEI--CAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADTEAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVV 643 E C GI GI +D I C +SCGSCGG GC+ RDGG SEACCGGGV A GR CS T APC+ P PE DE+ C GI GI +D ICC +SCGSCGGTGC+ RDGG SEACCGGGV A GR CS + APC+ E C G+ GI DVCC SCGSCGGTGC+ RDGG S+ACCGGGV R CS + APCVV Sbjct: 62 ETCDGGIVGIQQSD-ISCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSD-ICCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRYCSVTGEAPCMT--NEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRDCSVTGEAPCVV 267
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.040e-55 Identity = 123/224 (54.91%), Postives = 137/224 (61.16%), Query Frame = 2 Query: 8 MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPE----------DEI--CAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADTEAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVV 643 MC GI GI +D ICC +SCGSCGG GC+ RDGG SEACCGGGV A GR CS T APC+ P P DE+ C GI GI +D ICC + CGSCGGTGC+ RDGG SEACCGGGV A GR CS + APC+ E C G+ GI DVCC SCGSCGGTGC+ RDGG S+ACCGGGV R CS + APCVV Sbjct: 24 MCDGGIVGIQQSD-ICCSSSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSD-ICCSSRCGSCGGTGCTSRDGG-----SEACCGGGVRASGRYCSVTGEAPCMT--NEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGG-----SEACCGGGVRASGRDCSVTGEAPCVV 228
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.600e-55 Identity = 122/239 (51.05%), Postives = 138/239 (57.74%), Query Frame = 2 Query: 8 MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPEDE------------ICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADT---------------EAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVV 643 MC GI GI A + +CC SCGSCGGVGCSGRDGG S+ACCGGGV A GR+C+ T APC+ P PE +C GI GI +D +CC SCGSC G+GCSGRDGG D ACCGGGV A GR CS + APC+ E C G+ GI A DVCC SCGSCGG+GCSGRDGG S ACCGGGV R CS + APC+V Sbjct: 315 MCDGGIVGIQAKE-VCCSASCGSCGGVGCSGRDGG-----SDACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEAPMCDGGIIGIQTSD-VCCSASCGSCXGSGCSGRDGGPD-----ACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGG-----SDACCGGGVRASGRFCSVTGEAPCLV 536
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 196 bits (498), Expect = 2.090e-52 Identity = 119/238 (50.00%), Postives = 140/238 (58.82%), Query Frame = 2 Query: 8 MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPP------------EDEICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADT---------------EAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCV 640 MC GI GI +D +CC SCGSCGG GC+GRDGG SE+CCGGGV A GR CS T APC+ P P E +C GI GI ++D +CC SCGSCGG+GC+GRDGG SE+CCGGGV A GR CS + APC+ E C G+ GI + DVCC SCGSCGG+GCSGRDGG S++CCGGGV G R CS + APC+ Sbjct: 157 MCDGGIVGIQTSD-VCCSASCGSCGGSGCTGRDGG-----SESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSD-VCCSASCGSCGGSGCTGRDGG-----SESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGG-----SESCCGGGVRGSGRYCSVTGEAPCM 377
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 192 bits (488), Expect = 5.190e-51 Identity = 120/240 (50.00%), Postives = 141/240 (58.75%), Query Frame = 2 Query: 11 CAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPE----------DE----ICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADT---------------EAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVV 643 C GI GI ++D +CC SCGSCGG GC+GRDGG D ACCGGGV + GR CS T APC+ P PE DE +C GI GI ++D +CC +SCGSCGG+GC+GRDGG+D ACCGGGV A GR CS + APC+ E C G+ GI + DVCC SCGSCGGTGC+ RDGGA+ ACCGGGV R CS + APCVV Sbjct: 53 CDGGIVGIQSSD-VCCSLSCGSCGGTGCTGRDGGAD-----ACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSD-VCCTSSCGSCGGSGCTGRDGGED-----ACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGAD-----ACCGGGVRASGRDCSVTGEAPCVV 275
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.040e-49 Identity = 116/239 (48.54%), Postives = 138/239 (57.74%), Query Frame = 2 Query: 8 MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPP------------EDEICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVA---------------DTEAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVV 643 MC I GI ++D +CC SCGSCGG GC+ RDGG SE+CCGGGV A GR CS T APC+ P P E +C I GI ++D +CC SCG+CGG+GC+GRDGG SE+CCGGGV A GR CS + APC+ E C G+ GI A DVCC SCGSCGG+GC+GRDGG S++CCGGGV R CS + APCVV Sbjct: 144 MCDGDIVGIQSSD-VCCSASCGSCGGSGCTERDGG-----SESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSD-VCCSASCGTCGGSGCTGRDGG-----SESCCGGGVRASGRYCSITGEAPCMTGAAPTPAXXXXXXXXXTVEVPKCDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGG-----SESCCGGGVRASGRDCSVTGEAPCVV 365
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 177 bits (448), Expect = 6.820e-46 Identity = 131/313 (41.85%), Postives = 160/313 (51.12%), Query Frame = 2 Query: 8 MCAAGIAGILANDGI-----CCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPEDEICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADTEAETCIAGVP---------GILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVVVEDSDDDDTPT--------------GDFTCDGVANGDFCCSDGCGECGGSGCSNRGGGLTGNDCCTSDILASGRLCSDTRAAPCFLD 862 + G+A DGI CC C CGG GCS R GD +G++ CC +LA G+ C + APCL+ E P + G GIL D +CC CG+CGG+GC R G + +E CC + A C S APCVV + T G+L D CC C CGG+GCS R GG TG+ C ++ +CS + APC+V D D +PT G FTCDGV GD+CCS GC ECGGSGCS+RGGGLTG DCCTSDI LCS T AAPC +D Sbjct: 10 LLVVGVAKGQTCDGILKGIYCCSAGCEECGGSGCSDR--GDGLTGAD-CCTSDILAAGKACGS---APCLLEEGSSPTPAS-SGGCDGILQGD-VCCSAECGTCGGSGCGSRAG---LTANE-CCTSTIAAANVPCGS---APCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGG--LTGADCC----TSDISNLCSVTGAAPCIV----DGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVD 294
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.950e-40 Identity = 106/235 (45.11%), Postives = 121/235 (51.49%), Query Frame = 2 Query: 233 ICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVVADT---------------EAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVVVEDSDDDDT-----------PTGDFTCDGVANGDFCCSDGCGECGGSGCSNRGGGLTGNDCCTSDILASGRLCSDTRAAPCFL 859 +C GIAGI A+D +CC SCGSCGG+GCSGRDGG D ACCGGGV A GR CS + APC+ E C + GI A DVCC SCGSCGG+GCSGRDGG S ACCGGGV R CS + APC+ + T P D G+ D CCS CG C+ R GG + CC + ASG LCS T APC L Sbjct: 179 MCEGGIAGIQASD-VCCSVSCGSCGGSGCSGRDGGSD-----ACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGG-----SDACCGGGVRASGRFCSVTGEAPCMTGPAPTTEPTXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXCTGRDGGP--DACCGGGVRASGLLCSVTGEAPCLL 400
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 143 bits (361), Expect = 4.430e-34 Identity = 109/323 (33.75%), Postives = 150/323 (46.44%), Query Frame = 2 Query: 5 EMCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLALGRVCSATVGAPCLVTEEPPPEDEICAAGIAGILANDGICCPNSCGSCGGTGCSGRDGGDDFSGSEACCGGGVLALGRTCSSSVGAPCVV-----ADT--------------------------------EAETCIAGVPGILARDVCCPTSCGSCGGTGCSGRDGGANFTGSQACCGGGVVGLNRVCSASVGAPCVVVEDSDDDDTPTGDFTCDGVANGDFCCSDGCGECGGSGCSNRGGGLTGNDCCTSDILASGRLCSDTRAAPCFLD 862 + C+ G+ GI + + CC CG+CGG C GG G++ CC ++ G +CS + APC + D++C+ GI GI + + CC CG+CGG+GC GG G++ CC G + G CS ++ APCVV ADT + C G+PGI + CC CG+CGG C GG G+ CC +V +CS ++ APC + DGV+ CC CGECGGSGC+ GGGL ++CC S+I G LCS APC +D Sbjct: 745 DTCSNGMPGIQSGN-ACCLAECGACGGSDCDAFGGG---LGADNCCESDIVEHGELCSIALEAPCYL-------DDVCSDGIPGIRSGN-ACCLAECGACGGSGCDEFGGG---LGADNCCEGNIEEHGELCSITLEAPCVVDGRLVADTVPCPSCLMVCLSEHGLTLPPSLFRISSRYSSLPPDMCSNGIPGIQSGSACCLAECGACGGLDCDEFGGGL---GADNCCVSDIVEHGELCSIALEAPCYI----------------DGVS----CCLTECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVD 1029 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig936.18354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig936.18354.1 >prot_L-elsbetiae_contig936.18354.1 ID=prot_L-elsbetiae_contig936.18354.1|Name=mRNA_L-elsbetiae_contig936.18354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp MCAAGIAGILANDGICCPNSCGSCGGVGCSGRDGGDDFSGSEACCGGGVLback to top mRNA from alignment at L-elsbetiae_contig936:10201..18414- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig936.18354.1 ID=mRNA_L-elsbetiae_contig936.18354.1|Name=mRNA_L-elsbetiae_contig936.18354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8214bp|location=Sequence derived from alignment at L-elsbetiae_contig936:10201..18414- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig936:10201..18414- >mRNA_L-elsbetiae_contig936.18354.1 ID=mRNA_L-elsbetiae_contig936.18354.1|Name=mRNA_L-elsbetiae_contig936.18354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig936:10201..18414- (Laminarionema elsbetiae ELsaHSoW15)back to top |