mRNA_L-elsbetiae_contig9331.18331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9331.18331.1
Unique NamemRNA_L-elsbetiae_contig9331.18331.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9331.18331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9331contigL-elsbetiae_contig9331:4925..6774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size307
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9331.18331.1prot_L-elsbetiae_contig9331.18331.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9331 4925..6756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.9474816-CDS-L-elsbetiae_contig9331:4924..51141622817002.9474816-CDS-L-elsbetiae_contig9331:4924..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9331 4925..5114 -
1691683975.1492345-CDS-L-elsbetiae_contig9331:4924..51141691683975.1492345-CDS-L-elsbetiae_contig9331:4924..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9331 4925..5114 -
1622817002.959223-CDS-L-elsbetiae_contig9331:6658..67561622817002.959223-CDS-L-elsbetiae_contig9331:6658..6756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9331 6659..6756 -
1691683975.159139-CDS-L-elsbetiae_contig9331:6658..67561691683975.159139-CDS-L-elsbetiae_contig9331:6658..6756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9331 6659..6756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.9726815-UTR-L-elsbetiae_contig9331:6756..67741622817002.9726815-UTR-L-elsbetiae_contig9331:6756..6774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9331 6757..6774 -
1691683975.1714678-UTR-L-elsbetiae_contig9331:6756..67741691683975.1714678-UTR-L-elsbetiae_contig9331:6756..6774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9331 6757..6774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9331.18331.1

>prot_L-elsbetiae_contig9331.18331.1 ID=prot_L-elsbetiae_contig9331.18331.1|Name=mRNA_L-elsbetiae_contig9331.18331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MTRRPRDSLVRWTEPAVGSLAVLLLSCVGSSIMTVTAFVPTTALMGSSTR
AMFLPRWQQGFSLSLSSTASARWTSRNRGAVHTMPLALKTFEARTG
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mRNA from alignment at L-elsbetiae_contig9331:4925..6774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9331.18331.1 ID=mRNA_L-elsbetiae_contig9331.18331.1|Name=mRNA_L-elsbetiae_contig9331.18331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1850bp|location=Sequence derived from alignment at L-elsbetiae_contig9331:4925..6774- (Laminarionema elsbetiae ELsaHSoW15)
GCTCGCGGAGAGACAGCGATGACAAGGCGGCCTCGGGATTCACTTGTTCG
TTGGACAGAGCCTGCTGTTGGATCACTGGCGGTGCTGCTTCTTTCGTGCG
TTGGGTCATCCATCATGTGAGACTCGCTACAATACTACACTTAGGATAAC
GAGGCCGTGGACGGTCTCACTTGCATGTTGCGTACTTGGTCACCGCAGCA
GCACCACCTGCAGCACGGAAAACTCCTCTTTGGTACGCCGAACGTTGATT
GATGATTTTCCCTGCAGTAGCTCTTCCCACAAGTACATCCTCCAGTGTGA
GGAGCCTCCTTGCGCACTGGATGCATCTTGTATGTACAGCTCCGGCAGTG
CTGGCGACAGGTACTCCGGCAATGGCAGGGGTGCTGGTGTAGTGCCGACT
GCTATTGTACGTGTGTGCGGCTGAGCACGGGGGAGAGGCTCTTGTTTGTT
TGTTGGACCAAGCTGCCTGTGTTGGTGTACGGGCTAGTGGTGTTAATGTA
TTATGTACAGCAGTTACTGTTGCTATCTAGCCGTGCAAGCAGAAACCAGA
AACCAGAAAAAACCCATTTCGAATTGAACTTCAGCGACACCATTGCGAGC
AACTTCCATCCACGCCATGATTCCAAAAGCTTGAGAGTCCATCCTTGTTG
AGTGTTTCAAGAAATATAACATACCGAATAATACGCAAGAAAGCGAAATT
CGAGGGTGCGAGGGTTGATCGTTCTTCGGTTTCAAGAGCATGCACGACAG
ATTAGAGTAGCGCCGCCTAAGTACATATGGCCGACAAACAGCCTGCAGCA
TCTCGCCGCTGTAGCTGCTATGCAATAGCGGTGAGCAACAACTCGTATGT
ATGCGGATCACCTGGGTTTCGCGCGGCGTGTTTAAAAAACATGTTTATAG
GTGGGTGTAGCAAAGGGGGGGCTTTAAGTCCGGGTCTCTTCTCGACGCAT
GTGTGTGTCTACGTTACCGTCGTGGCTGTGCTACGTACCTACCTCCATCT
GCTCTCATCAACCTCCTTTTTTTCAGCTTTCCCGTAAATATTGTTCAAGA
GAAGTCCACGCGTCGACGTTCCGTATACGTGACGCAAGCTAACACACCCC
CTGGATCGATTTTCGAAGCTCGGTTACCTACTCCACAACGGGTATGATCA
TAATACCCAACGACACGTTTTCGGACAGCTCTTGATGAGATCTTTCCAAC
GCCGCCCTTTGGGGACTGACATGACACTCTTCTCGCCGTGGAGTACCTGA
GCTTTGAAAATCGGTCCGGGGGTGTGTTATCTTGTGTCGTATACGGTAGT
ACTCTGCCTCAATCCGTACTCATTCTCGTAACTGTAAGGCCGGATCTTAT
GGCCTGCTGTTGCTGCTGCCGCTACATACCCCCCAATGGCGCTTGAGCAA
CCAGCAGCCGATCCGCCGGGTGCAGCGGGCGGCGACTCGACGTCGACAGC
TTTTGAACCGCGCAGGCAAAGAGCCCCACCTTCTCTTAAACAGTGTTCCA
CATTATTCCTCCACATGCATATTGTACCTAACCGACCCCCCCCCCACCCT
AAGGATGTTTTGGGTTAGAGAGCTACTGTGAGAATCAACAACAACAACCC
TTTCGGAACCTGTACCACAAAATCCCCACCCACGCAACCCCCCCCCACCC
CCCCGGCCAGGACGGTAACCGCGTTTGTGCCGACGACGGCGCTCATGGGA
AGCTCGACGAGAGCCATGTTTCTGCCGAGATGGCAGCAGGGGTTCTCGTT
GTCCCTGTCGTCGACCGCTTCCGCCCGCTGGACCTCGAGAAATCGCGGGG
CCGTCCACACGATGCCGCTGGCGCTCAAGACTTTCGAGGCCCGCACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9331:4925..6774-

>mRNA_L-elsbetiae_contig9331.18331.1 ID=mRNA_L-elsbetiae_contig9331.18331.1|Name=mRNA_L-elsbetiae_contig9331.18331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig9331:4925..6774- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGGCGGCCTCGGGATTCACTTGTTCGTTGGACAGAGCCTGCTGT
TGGATCACTGGCGGTGCTGCTTCTTTCGTGCGTTGGGTCATCCATCATAT
GACAAGGCGGCCTCGGGATTCACTTGTTCGTTGGACAGAGCCTGCTGTTG
GATCACTGGCGGTGCTGCTTCTTTCGTGCGTTGGGTCATCCATCATGACG
GTAACCGCGTTTGTGCCGACGACGGCGCTCATGGGAAGCTCGACGAGAGC
CATGTTTCTGCCGAGATGGCAGCAGGGGTTCTCGTTGTCCCTGTCGTCGA
CCGCTTCCGCCCGCTGGACCTCGAGAAATCGCGGGGCCGTCCACACGATG
CCGCTGGCGCTCAAGACTTTCGAGGCCCGCACGGGGGACGGTAACCGCGT
TTGTGCCGACGACGGCGCTCATGGGAAGCTCGACGAGAGCCATGTTTCTG
CCGAGATGGCAGCAGGGGTTCTCGTTGTCCCTGTCGTCGACCGCTTCCGC
CCGCTGGACCTCGAGAAATCGCGGGGCCGTCCACACGATGCCGCTGGCGC
TCAAGACTTTCGAGGCCCGCACGGGG
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