mRNA_L-elsbetiae_contig9323.18324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9323.18324.1
Unique NamemRNA_L-elsbetiae_contig9323.18324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9323.18324.1 vs. uniprot
Match: A0A6H5L576_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L576_9PHAE)

HSP 1 Score: 562 bits (1449), Expect = 1.890e-195
Identity = 292/405 (72.10%), Postives = 325/405 (80.25%), Query Frame = 1 
Query:    1 MSTAWTKGDRKARRQLEKALKSDETDNVTRFALVRLLANKAEPVAAEELLRVPGIEDKMLADPTTRVDILTSLGGAYLMLWRARGATTSGNNRS-GGNGQGRDTTLGVVEIRLDVSSDRMDLLHRAQHFLQEALTAPEKMNDPALRAQV-------------------------------------------AFCKEARGDCKEALALYASIISDSALSPGISNVIFRTSVLLAYVGRLDECVRYLEFIEGQPPKGCSTLLVQALLYTCFVSMGLEMKASRRLETVREAFNEEYTAGRMGVGFSRDEIPWDRLPGWFHMWRELGVHSLRGGDYYAGIQMFSQATLQREDAETMVCTGEMLWVLGDAKRALTLCERAYAADPLHTGAKKRLSGWAPEKWKERIAKE 1083
            MS AWTKGD +A++QLEK+L SD+ D+VTRFALVRLLA+KAEP AAEELLR PG+ED++LADP TRV +L+SLGGAYLMLWRARG TTS +  S  G GQG+DT   VVEIRLDVSS+R DLLHRAQHFL+EAL +PE +NDPA+RAQV                                           AFCKEARGD KEAL LYASIISDSALSPG S VIFRTSVLLAYVGRLDECVRYLEFIEGQPPKGCS LLVQALLYTC+VS+GLE+K SRRL T+REA+N+EYTAGRMG GFSRDEIPWDRLPGWF+MWRELGV S+R G+YYAGIQMFSQATLQR+D ETMVCT EMLWVLG+ KRAL LCERAYAADPLH GA++RLSGWAP+KWKERI KE
Sbjct:    1 MSLAWTKGDWRAKKQLEKSLSSDQDDHVTRFALVRLLASKAEPAAAEELLRGPGVEDRLLADPNTRVAMLSSLGGAYLMLWRARGETTSESTGSRAGGGQGKDTRE-VVEIRLDVSSERTDLLHRAQHFLEEALMSPENLNDPAIRAQVGERGKWKSVLRLPGLARLPPSRLSLFRPDIRSLLHPDCCAFKKAFCKEARGDYKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDECVRYLEFIEGQPPKGCSMLLVQALLYTCYVSLGLEVKVSRRLITLREAYNDEYTAGRMGRGFSRDEIPWDRLPGWFYMWRELGVESIRAGNYYAGIQMFSQATLQRQDPETMVCTAEMLWVLGEPKRALALCERAYAADPLHIGAQRRLSGWAPQKWKERIVKE 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9323.18324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L576_9PHAE1.890e-19572.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9323contigL-elsbetiae_contig9323:213..3375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_004110.1
Exons7
Model size1083
Cds size1083
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.3835394-CDS-L-elsbetiae_contig9323:212..3261622817002.3835394-CDS-L-elsbetiae_contig9323:212..326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 213..326 -
1691683974.7310283-CDS-L-elsbetiae_contig9323:212..3261691683974.7310283-CDS-L-elsbetiae_contig9323:212..326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 213..326 -
1622817002.3955848-CDS-L-elsbetiae_contig9323:676..7611622817002.3955848-CDS-L-elsbetiae_contig9323:676..761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 677..761 -
1691683974.7408447-CDS-L-elsbetiae_contig9323:676..7611691683974.7408447-CDS-L-elsbetiae_contig9323:676..761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 677..761 -
1622817002.411357-CDS-L-elsbetiae_contig9323:1172..12921622817002.411357-CDS-L-elsbetiae_contig9323:1172..1292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 1173..1292 -
1691683974.7546704-CDS-L-elsbetiae_contig9323:1172..12921691683974.7546704-CDS-L-elsbetiae_contig9323:1172..1292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 1173..1292 -
1622817002.4259021-CDS-L-elsbetiae_contig9323:1537..17101622817002.4259021-CDS-L-elsbetiae_contig9323:1537..1710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 1538..1710 -
1691683974.764336-CDS-L-elsbetiae_contig9323:1537..17101691683974.764336-CDS-L-elsbetiae_contig9323:1537..1710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 1538..1710 -
1622817002.4392815-CDS-L-elsbetiae_contig9323:2089..22351622817002.4392815-CDS-L-elsbetiae_contig9323:2089..2235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 2090..2235 -
1691683974.7739189-CDS-L-elsbetiae_contig9323:2089..22351691683974.7739189-CDS-L-elsbetiae_contig9323:2089..2235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 2090..2235 -
1622817002.4527159-CDS-L-elsbetiae_contig9323:2401..27051622817002.4527159-CDS-L-elsbetiae_contig9323:2401..2705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 2402..2705 -
1691683974.7825506-CDS-L-elsbetiae_contig9323:2401..27051691683974.7825506-CDS-L-elsbetiae_contig9323:2401..2705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 2402..2705 -
1622817002.4661067-CDS-L-elsbetiae_contig9323:3234..33751622817002.4661067-CDS-L-elsbetiae_contig9323:3234..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 3235..3375 -
1691683974.7948046-CDS-L-elsbetiae_contig9323:3234..33751691683974.7948046-CDS-L-elsbetiae_contig9323:3234..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9323 3235..3375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9323.18324.1prot_L-elsbetiae_contig9323.18324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9323 213..3375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9323.18324.1

>prot_L-elsbetiae_contig9323.18324.1 ID=prot_L-elsbetiae_contig9323.18324.1|Name=mRNA_L-elsbetiae_contig9323.18324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=361bp
MSTAWTKGDRKARRQLEKALKSDETDNVTRFALVRLLANKAEPVAAEELL
RVPGIEDKMLADPTTRVDILTSLGGAYLMLWRARGATTSGNNRSGGNGQG
RDTTLGVVEIRLDVSSDRMDLLHRAQHFLQEALTAPEKMNDPALRAQVAF
CKEARGDCKEALALYASIISDSALSPGISNVIFRTSVLLAYVGRLDECVR
YLEFIEGQPPKGCSTLLVQALLYTCFVSMGLEMKASRRLETVREAFNEEY
TAGRMGVGFSRDEIPWDRLPGWFHMWRELGVHSLRGGDYYAGIQMFSQAT
LQREDAETMVCTGEMLWVLGDAKRALTLCERAYAADPLHTGAKKRLSGWA
PEKWKERIAKE
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mRNA from alignment at L-elsbetiae_contig9323:213..3375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9323.18324.1 ID=mRNA_L-elsbetiae_contig9323.18324.1|Name=mRNA_L-elsbetiae_contig9323.18324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3163bp|location=Sequence derived from alignment at L-elsbetiae_contig9323:213..3375- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACGGCTTGGACGAAGGGCGACAGGAAGGCTCGGCGCCAGCTGGA
GAAAGCTCTCAAATCCGACGAGACCGACAATGTCACGCGTTTTGCTCTCG
TGCGATTGCTTGCGAACAAGGCCGAGCCCGTTGCTGCTGAGGTGAAAACA
CACTGCATACATTTAGACTATAAGCCTAGATGTGCAACAGAACTACGTTC
AAAATACATTCTGGAGGAGTGCTCGAGACTACTATCTATCTAATGTTACA
AATCTATGTAGACTACAGCGTAGATATGCACTCTCTACGTAGGTATGTAT
GCAGATTGTAGACTGTGGATGAATATACGACACGGCTACTTTGTATACGA
AATATAGACTATTTAGCTTTTTTGCTAAGTTCGGATCGTGTACATGAAGG
GCACTCGATAAATATGGTGTGGATAATGAGGGCGATACACAGGCATCGAT
GGCGTAAAACACATACAGGAAGCCTGTACTTGCAGGCGACCGGGTCGGGT
TCGATAAAAACCGTCAGGTTCCACACATACACCAAGCATTTGTCTGTCGT
GCCCATAAGCGCCGTATTACTTGTATCTAGAACAGACGAACTAGTCTACA
ATATGTACCGCCGTCTGTTGTTGCCACTCATAAACCCTCTGGCACGTTCG
ACACGCTTGAATTTCACAAGGAGCTCCTACGTGTGCCTGGGATCGAAGAC
AAAATGCTGGCGGATCCCACCACACGTGTGGACATTCTCACTTCGCTTGG
AGGTGCCTACCTCATGCTGTGGAGGGCACGAGGAGCAACGACGTCTGGAA
ACAACAGGAGCGGTGGAAACGGTCAAGGGAGAGATACCACCCTAGGTGTA
GTCGAGATCAGGCTGGACGTGTCTTCGGACAGGATGGATCTGCTTCACCG
GGCGCAGCACTTTTTACAGGAGGCCTTGACGGCTCCTGAGAAAATGAATG
ACCCCGCTCTTCGGGCTCAAGTTGGTGAGGCAAAAAACATTTGTTTGGAA
CAACTGTCGAACGTGGACTGTTGTGCCTGTAGGGAACTCCGCTCCCCTTT
TCAAGTCTTGTCTACATCGAGCTTGTCCCAACACCATAGATACAATGACA
CTCCCTCTTTGTTCGATCCCTACGCCGCCGACGTCAACAGCATTCTGCAA
AGAGGCAAGAGGTGACTGCAAAGAAGCCCTCGCTCTGTACGCAAGCATCA
TTTCCGACTCCGCGCTTTCGCCAGGGATCTCCAATGTGATCTTCCGCACG
TCAGTGCTACTGGCCTACGTCGGGAGACTCGATGAGGTTCGCACGAGAAG
AAGTGGGACGTGCAGTGGCATGAGAGGGACGAAAACTGCTGTAGAAACGT
GGCTATTTTTTTGCAATATGTAGCTCTTTTCTTGCGATAAATACAGTATG
GACAGTTTTTCATTTTGCTCACCAAGGAACGATAAACTCACAAAAGGAGA
CCAGACGCATTGAAAACAACGAGCGGGAAGCCCTCGATAGAACCGGCAAC
TGTGAACATCACAGTGCGTTCAGCGCTACAGGGCCTACGCGTGTTTGATT
TGGCTTGGGCGCGCCTGCAGATGTAGCACTTGCATGGACCGCCAGTCCAA
CAAAATACAACGCAGTGGAAGCTCACACTGGGCGATCTGCTACCGGCTTT
CTTAAAACCGTGCAGTGCGTCCGGTATTTGGAATTCATTGAAGGGCAACC
TCCGAAGGGGTGCAGCACACTGCTGGTGCAAGCCCTGCTGTACACATGCT
TTGTGTCAATGGGCCTTGAGATGAAAGCATCTCGGCGCCTGGAAACTGTT
CGAGAGGCGTTCAATGAGGAATACACTGCTGGCCGAATGTGAGTTGTCCC
AGGCGCAATAACACATCGTACTGCAATGACTAACTTCGTGCAAATTGGCA
AATGTTCAACAGCTTATCTTGCGCCAACGGCAGTAGTGACTTGCCAGCCC
CGGGGCCCATGTGTGACTCTCTCGCACCACCACGCGAAATAGCGAACACA
TAAACAAAGGTTAACTTTTACTACGCTGTTTTGTGTCCTCCTCTCTGCAT
ACCTGCTCCCCTCCCGAACCATCACGTACGAAGGGGGGTAGGGTTCAGCC
GCGACGAAATTCCGTGGGATCGCCTGCCTGGGTGGTTTCATATGTGGCGG
GAGCTGGGGGTGCACAGCCTGAGGGGTGGGGACTACTATGCGGGCATACA
AATGTCAGTTTAACAGAGCTTTTGTTCGACAGAAGAGTTTCGAACTTTGG
TCCTGAGCAAGAGTTTCTATCCATGTGTTGTTTGTGCGGGGGTGTCGAAA
TGCTCGTTTGCCCGCCCGCTACACGTACCACCTCAGGATGTTCGGATTAG
GTTGGGGTTCAAGCTGTGTGCAAGTCGAGGTGGGGGTTGAGTTTTGCTTC
GGTGCTTGATCCAGAAACGTGAGTGCTGCTGGAGGCCGTAAGGCAAAAAA
GGTAGTCCTTCTTCCCAAATACTCACGTGATAAAGGTGCAGTTCAACACA
ACATCTCGTCCACGCAACACGTTGGGCCAGCACGCAGCGATCGGCTTCCT
GCAAGCCGCCCGCGCTCACGCCACCGCCCCCGCCATGCCGCTTGATTGCC
TTGACGAATATAAGGTTTTCCCAAGCGACGCTACAGCGGGAGGACGCTGA
GACGATGGTTTGTACCGGAGAGATGCTCTGGGTGTTGGGCGATGCAAAGG
TGATAAGCGCGCTTGCTTTCCTATTTGAGCAGCAAAACGATGCCCCCCAA
CCAGTACACAGCAAAAGTAATCGTCGTCCGCCTTTCGGGATTCCCCTGGC
CACCATTGATACAGCATGCTTTGCATGGCGCGAAAGTGGTACAACGCACA
GCAGTACAACACAACACAAGCATCCGGAGCAGAGACATGAACCCGCAAAG
CGGATGCATGTACTGCTGTCGTTGCTCCACAAAAGTTGGTGTGACTTTGC
AATTTTCTCGTCCCATTGTACGCAATCTGGCTGTCCGTAAGAGCACCCTC
TGCCGCCGCTTTTGCGCTGCTCATGCGGTTTCTCTTTCTGCGCACAAAGC
GGGCCTTGACGCTGTGTGAAAGGGCGTACGCGGCCGACCCGTTGCACACG
GGAGCAAAGAAACGGTTGTCGGGTTGGGCGCCCGAGAAGTGGAAGGAGAG
GATCGCGAAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9323:213..3375-

>mRNA_L-elsbetiae_contig9323.18324.1 ID=mRNA_L-elsbetiae_contig9323.18324.1|Name=mRNA_L-elsbetiae_contig9323.18324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig9323:213..3375- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACGGCTTGGACGAAGGGCGACAGGAAGGCTCGGCGCCAGCTGGA
GAAAGCTCTCAAATCCGACGAGACCGACAATGTCACGCGTTTTGCTCTCG
TGCGATTGCTTGCGAACAAGGCCGAGCCCGTTGCTGCTGAGATGTCGACG
GCTTGGACGAAGGGCGACAGGAAGGCTCGGCGCCAGCTGGAGAAAGCTCT
CAAATCCGACGAGACCGACAATGTCACGCGTTTTGCTCTCGTGCGATTGC
TTGCGAACAAGGCCGAGCCCGTTGCTGCTGAGGAGCTCCTACGTGTGCCT
GGGATCGAAGACAAAATGCTGGCGGATCCCACCACACGTGTGGACATTCT
CACTTCGCTTGGAGGTGCCTACCTCATGCTGTGGAGGGCACGAGGAGCAA
CGACGTCTGGAAACAACAGGAGCGGTGGAAACGGTCAAGGGAGAGATACC
ACCCTAGGTGTAGTCGAGATCAGGCTGGACGTGTCTTCGGACAGGATGGA
TCTGCTTCACCGGGCGCAGCACTTTTTACAGGAGGCCTTGACGGCTCCTG
AGAAAATGAATGACCCCGCTCTTCGGGCTCAAGTTGGAGCTCCTACGTGT
GCCTGGGATCGAAGACAAAATGCTGGCGGATCCCACCACACGTGTGGACA
TTCTCACTTCGCTTGGAGGTGCCTACCTCATGCTGTGGAGGGCACGAGGA
GCAACGACGTCTGGAAACAACAGGAGCGGTGGAAACGGTCAAGGGAGAGA
TACCACCCTAGGTGTAGTCGAGATCAGGCTGGACGTGTCTTCGGACAGGA
TGGATCTGCTTCACCGGGCGCAGCACTTTTTACAGGAGGCCTTGACGGCT
CCTGAGAAAATGAATGACCCCGCTCTTCGGGCTCAAGTTGCATTCTGCAA
AGAGGCAAGAGGTGACTGCAAAGAAGCCCTCGCTCTGTACGCAAGCATCA
TTTCCGACTCCGCGCTTTCGCCAGGGATCTCCAATGTGATCTTCCGCACG
TCAGTGCTACTGGCCTACGTCGGGAGACTCGATGAGCATTCTGCAAAGAG
GCAAGAGGTGACTGCAAAGAAGCCCTCGCTCTGTACGCAAGCATCATTTC
CGACTCCGCGCTTTCGCCAGGGATCTCCAATGTGATCTTCCGCACGTCAG
TGCTACTGGCCTACGTCGGGAGACTCGATGAGTGCGTCCGGTATTTGGAA
TTCATTGAAGGGCAACCTCCGAAGGGGTGCAGCACACTGCTGGTGCAAGC
CCTGCTGTACACATGCTTTGTGTCAATGGGCCTTGAGATGAAAGCATCTC
GGCGCCTGGAAACTGTTCGAGAGGCGTTCAATGAGGAATACACTGCTGGC
CGAATTGCGTCCGGTATTTGGAATTCATTGAAGGGCAACCTCCGAAGGGG
TGCAGCACACTGCTGGTGCAAGCCCTGCTGTACACATGCTTTGTGTCAAT
GGGCCTTGAGATGAAAGCATCTCGGCGCCTGGAAACTGTTCGAGAGGCGT
TCAATGAGGAATACACTGCTGGCCGAATGGGGGTAGGGTTCAGCCGCGAC
GAAATTCCGTGGGATCGCCTGCCTGGGTGGTTTCATATGTGGCGGGAGCT
GGGGGTGCACAGCCTGAGGGGTGGGGACTACTATGCGGGCATACAAATGG
GGGTAGGGTTCAGCCGCGACGAAATTCCGTGGGATCGCCTGCCTGGGTGG
TTTCATATGTGGCGGGAGCTGGGGGTGCACAGCCTGAGGGGTGGGGACTA
CTATGCGGGCATACAAATGTTTTCCCAAGCGACGCTACAGCGGGAGGACG
CTGAGACGATGGTTTGTACCGGAGAGATGCTCTGGGTGTTGGGCGATGCA
AAGGTTTTCCCAAGCGACGCTACAGCGGGAGGACGCTGAGACGATGGTTT
GTACCGGAGAGATGCTCTGGGTGTTGGGCGATGCAAAGCGGGCCTTGACG
CTGTGTGAAAGGGCGTACGCGGCCGACCCGTTGCACACGGGAGCAAAGAA
ACGGTTGTCGGGTTGGGCGCCCGAGAAGTGGAAGGAGAGGATCGCGAAAG
AGCGGGCCTTGACGCTGTGTGAAAGGGCGTACGCGGCCGACCCGTTGCAC
ACGGGAGCAAAGAAACGGTTGTCGGGTTGGGCGCCCGAGAAGTGGAAGGA
GAGGATCGCGAAAGAG
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