mRNA_L-elsbetiae_contig932.18323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig932.18323.1
Unique NamemRNA_L-elsbetiae_contig932.18323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig932.18323.1 vs. uniprot
Match: D7FII3_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.870e-9
Identity = 48/118 (40.68%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  280 GEQGAGEAGTEKRVVAATVDFFRQGSYAPALAATAPLLGTGSXXXXXXXXXXXXXCPPKHVQGQPRDTQGTSRXXXXXXXXXXXXXXXXNAAVGMGGEADTEAVVCMLWLQDGGGEVV 633
            G+QGAGE G   RV AATVDFFR+GSY+PALAATAP+                   PP     +     GT+                 ++A+G   ++DTEA VCM+WLQ GG  VV
Sbjct:   26 GDQGAGE-GRGNRVTAATVDFFRKGSYSPALAATAPVF-----------------VPPSSTPPKSARAAGTT-----------GDKSCHDSALGES-DSDTEAAVCMIWLQAGGEVVV 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig932.18323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FII3_ECTSI6.870e-940.68Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig932contigL-elsbetiae_contig932:16124..19423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D7FII3
KEGG koko:K10395,ko:K10770
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.tRNA (uracil) methyltransferase activity
EggNOG OGsCOG0500@1,KOG1331@2759
EC2.1.1.229
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko04812
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-28_000390.1
Exons5
Model size635
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig932.18323.1prot_L-elsbetiae_contig932.18323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig932 16124..19422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.3076236-CDS-L-elsbetiae_contig932:16123..161861622817002.3076236-CDS-L-elsbetiae_contig932:16123..16186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 16124..16186 +
1691683974.6679869-CDS-L-elsbetiae_contig932:16123..161861691683974.6679869-CDS-L-elsbetiae_contig932:16123..16186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 16124..16186 +
1622817002.319999-CDS-L-elsbetiae_contig932:16569..166921622817002.319999-CDS-L-elsbetiae_contig932:16569..16692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 16570..16692 +
1691683974.682101-CDS-L-elsbetiae_contig932:16569..166921691683974.682101-CDS-L-elsbetiae_contig932:16569..16692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 16570..16692 +
1622817002.3302166-CDS-L-elsbetiae_contig932:17731..178161622817002.3302166-CDS-L-elsbetiae_contig932:17731..17816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 17732..17816 +
1691683974.6923738-CDS-L-elsbetiae_contig932:17731..178161691683974.6923738-CDS-L-elsbetiae_contig932:17731..17816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 17732..17816 +
1622817002.341308-CDS-L-elsbetiae_contig932:18546..188871622817002.341308-CDS-L-elsbetiae_contig932:18546..18887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 18547..18887 +
1691683974.7062726-CDS-L-elsbetiae_contig932:18546..188871691683974.7062726-CDS-L-elsbetiae_contig932:18546..18887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 18547..18887 +
1622817002.3527792-CDS-L-elsbetiae_contig932:19401..194221622817002.3527792-CDS-L-elsbetiae_contig932:19401..19422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 19402..19422 +
1691683974.7213535-CDS-L-elsbetiae_contig932:19401..194221691683974.7213535-CDS-L-elsbetiae_contig932:19401..19422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig932 19402..19422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig932.18323.1

>prot_L-elsbetiae_contig932.18323.1 ID=prot_L-elsbetiae_contig932.18323.1|Name=mRNA_L-elsbetiae_contig932.18323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
ALLDKSVAFLESLRLAATTGKRQVMGKTLLDPKKDSKWDRGRTRQALHFG
AHVRGGKAVGAEVEDLPTCLVEVVRLLQAKGLLLSSPSQEVVAGEQGAGE
AGTEKRVVAATVDFFRQGSYAPALAATAPLLGTGSSSAAAASASAAAGCP
PKHVQGQPRDTQGTSRSSTSSRQRESKGAGGGNAAVGMGGEADTEAVVCM
LWLQDGGGEVV
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mRNA from alignment at L-elsbetiae_contig932:16124..19423+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig932.18323.1 ID=mRNA_L-elsbetiae_contig932.18323.1|Name=mRNA_L-elsbetiae_contig932.18323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3300bp|location=Sequence derived from alignment at L-elsbetiae_contig932:16124..19423+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCTGGACAAGAGCGTTGCTTTCCTAGAATCGCTTCGGCTTGCGGC
CACCACAGGGAAGGTGCGTTCGCGGCGTTCGTGCCATCTACATGCCCACA
CCGCTGTTTGCCCCACACGTGCATATCGCACGGGTGGGTGATTCACGAAC
CCGTGCAGAATGTCCCTTTCCCTTAAATATGTATGTAAGTCTGAAGCTCT
GATTGTGTGTAGTAGACCCTACATGTTGGTGGGCTTTCTCTTACTTGTAG
CCCGCGGGAGTGCATTCATTCGACGAGCTGCCAACGCAGTGTGCAATGTC
GTCGGCGATCCCCCCTACCGGTAAAATTTGGTAGTTCGCGTTTCTAGAGG
AAAGTGGAAGTCTAGGCGCAAAGTTTATTTGCCGTGTCGAGAGTATCCAC
TAGTGTACTCATTTGCCAGTGTTGTTCACTGCTGTACTCTGTGCAGCGAC
AGGTGATGGGTAAAACTCTCCTCGATCCGAAGAAGGACAGCAAATGGGAT
AGGGGTCGGACGCGCCAAGCACTGCACTTCGGAGCGCACGTACGGGGCGG
CAAGGCGGTTGGTGCCGAGGTATGCCAATACCTCTGCGCGCGTGCCATGT
AGGCACAGTGTTTACGTCTATACACCATTTGGCCGCATGTTCCGAGCGCA
TACCGACCAGATACTGCTGCCGGTTTGTTGTATTCGTCCCCAGGAATAGA
AACACCTGGAAGACTCACGTCGGGGTACTCCTGCAATCCGTAATAGCTTG
TTTCGTCGCTGGGCCTCATATGGTCCGTCTGATACAATTTGTCCATTCAC
GTTTTTTGCCGTAACTTAAAAATAAAAGAATTAGACCGCTTTTCAGGTAT
GGTAGTGATCCCCGCAGCAAGGCGAGGAAAAATGTGTTACAAACATTTTG
GACACCTACACACTAAATCCAAGTCATTGTGTGGCAAAAAAAGTGGACAG
GGAAAAAATAAGGGTTTCGGACAAATCGTCGAATATCCCACCAACCAGCG
TTTTTAAGATTTATATTTTTTCGGAAAAAAAAAACAGTCTGGGGAATTCG
AGAAGAACGTTTGCCGTGATCTATTTTAAAATCGTATGGTTCAATTTTGC
AGGAAAAAGTGAACAAGGTGGTCTCTAGAATCCAGTTTTTCGCCGATGTT
TAACCAACCATCGTTTGCCGTGTTCTTTTTTTTAAACGTATGGTTGGTCA
TCCCAGGAAAAAGCGAACATATTTTTCCAATTTTTTTGTGATAACGACGA
GACAAAATAATAAAACAAATATCGCTTTCCATAGAAAGACACGCCTGGAG
ACAGGGCGTTTGCCGATGTTTTTGAAATTTGAAACAACCCCCCCACTTCC
GAGAGAAATGTACCTAAGTGCAACTTGAAATTGTGGATAAACTGTGACGG
ACAGATATAGGAGTGATGATTGCCATTTTCGCGACAGGGCTTCCTCTGTT
ACTACATACATACATCCGACGCAGTAAGCGTGAAAACAGACTTTCCGTCC
CGTCTATGTATGTACGACACACTTGTATGCACAAGGCCTAGACTGCACAC
ACATTCAACCAAAACTCTGACAGAAGTAGCACACCATGTGTGGCCGTTTC
TCTTGCAGGTGGAAGACCTACCCACGTGCCTGGTCGAAGTCGTGCGGTTG
CTCCAGGCCAAAGGCTTGCTTCTGTCTTCTCCAAGCCAGGAAGGTGCGAA
GCTCCGCCCGTAGAGCCACAGCGGCACGCTAGCGACAGGGATGCAGTACG
CCCAAGGCCATGCATGATGCACGCGCACCAGAAAAATATAGAAGGGGCGT
TGGGTCGGACGATAACCCCGCGCGGGGGTTGTCTGCCAGAAAATGACGAA
GGTTGCCTCCGAGAGTAGGAGGATGGGGGAAGCAGTGACGCTCTGCCGTT
CGCTTCGCGTGGCAACGCCCCGTCTATTGCCATGTCCAATCGTATCCTGT
CCTGTCGGTGCTTTTGTCGAGAGGAGGGTGGGTGCGTGTTTCGCCGCACC
GCACACCAGACCAAGGACGAAAGCATATTTTTCTCGCAGCTCTTCCCATA
CATCACACCCAGTCGTTCGCTCAGTGAGCCGATCTGTACATTCGCCTGCG
ATCTGTGCCGTGAACCAGGGCATCTGTCGCTATGTAGGTAGGCTTCTTCA
AGAGGTGCCCCTGTACGCTTGGCTATATTTGCTTTTGTCTACTGCTGAGA
GTTGGCAACAGCGTAGGCCGCGTGTGCTTAGGCGTGCTCTATGGGTGCCT
CGTGCATTCAACGCTCGCAACTTCAACGCTCGCAACTTCAACGCTCGCAA
CTTCTTCTGACACAACCTCCTCTTTTTTTGCATTTCGCTGTCGACCGCCG
TCGCCGCGACGCCTGTTCTCGCTGTTCTCACCGGTACTGCTGTGCGTTTG
GGCCATCTGGATGACGGCGGCAGTCGTGGCAGGCGAACAAGGTGCGGGCG
AGGCGGGGACCGAGAAGCGAGTGGTGGCCGCCACGGTGGACTTTTTCCGG
CAGGGGAGCTACGCCCCTGCTCTTGCGGCAACCGCTCCTTTGCTAGGCAC
GGGTTCTTCCTCAGCTGCTGCTGCTTCCGCTTCCGCTGCTGCTGGTTGTC
CGCCGAAGCACGTGCAAGGGCAGCCGAGGGACACGCAGGGAACAAGCAGA
AGCAGCACCTCCAGTCGCCAGCGAGAAAGCAAGGGTGCCGGGGGGGGTAA
CGCCGCTGTGGGGATGGGAGGAGAGGCAGACACGGAGGCGGTGGTGTGCA
TGCTTTGGCTTCAGGTACGCGCAAGCACGCGGTGGGTGTGACGCTATGTA
TGTGCCTCATTTTTGCAAAATGTGGGCTAGCATTTTGTGTGGGTGCGTTT
TGGTTGGTACCTGTTGTCAATACTCCTATTATTTACTGGTAGGATATGTT
ACTGCTTTATGTAGCCCACAGCAGCTGGCTGATCCAAGAGAGCCCGCCAG
TTGAGCAGTCTGTGTGGCGAGCCCCCGTTGACCCTACAATGGCCGGCGGT
GTTTCTATCGCTGATCTGCTGCGATGTGGTGCGCATGTTGAATGCCGAGT
TTGATCTGACTCGGGGGCCAGGGGGAGATGGAAGTAGAGATACAGCGGTG
ACGTCCATCGTCGCTTACTTGTTTCTGGCCGCTTGCACTTACCGCTGATG
TCTTCTGCGCTTTGTTATTTTACTCTACCTGTCCATGCGTCCGTCTGTCT
GTCTGTCTGTCTGCCTGTCGCGTGGCGTGCGTGTCGGATTTCCTCTCTCC
TTCTTTTTCCTTTTTTTTGTTTTTTCAGGACGGAGGGGGCGAAGTCGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig932:16124..19423+

>mRNA_L-elsbetiae_contig932.18323.1 ID=mRNA_L-elsbetiae_contig932.18323.1|Name=mRNA_L-elsbetiae_contig932.18323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig932:16124..19423+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCTGGACAAGAGCGTTGCTTTCCTAGAATCGCTTCGGCTTGCGGC
CACCACAGGGAAGGCGCTGCTGGACAAGAGCGTTGCTTTCCTAGAATCGC
TTCGGCTTGCGGCCACCACAGGGAAGCGACAGGTGATGGGTAAAACTCTC
CTCGATCCGAAGAAGGACAGCAAATGGGATAGGGGTCGGACGCGCCAAGC
ACTGCACTTCGGAGCGCACGTACGGGGCGGCAAGGCGGTTGGTGCCGAGC
GACAGGTGATGGGTAAAACTCTCCTCGATCCGAAGAAGGACAGCAAATGG
GATAGGGGTCGGACGCGCCAAGCACTGCACTTCGGAGCGCACGTACGGGG
CGGCAAGGCGGTTGGTGCCGAGGTGGAAGACCTACCCACGTGCCTGGTCG
AAGTCGTGCGGTTGCTCCAGGCCAAAGGCTTGCTTCTGTCTTCTCCAAGC
CAGGAAGGTGGAAGACCTACCCACGTGCCTGGTCGAAGTCGTGCGGTTGC
TCCAGGCCAAAGGCTTGCTTCTGTCTTCTCCAAGCCAGGAAGTCGTGGCA
GGCGAACAAGGTGCGGGCGAGGCGGGGACCGAGAAGCGAGTGGTGGCCGC
CACGGTGGACTTTTTCCGGCAGGGGAGCTACGCCCCTGCTCTTGCGGCAA
CCGCTCCTTTGCTAGGCACGGGTTCTTCCTCAGCTGCTGCTGCTTCCGCT
TCCGCTGCTGCTGGTTGTCCGCCGAAGCACGTGCAAGGGCAGCCGAGGGA
CACGCAGGGAACAAGCAGAAGCAGCACCTCCAGTCGCCAGCGAGAAAGCA
AGGGTGCCGGGGGGGGTAACGCCGCTGTGGGGATGGGAGGAGAGGCAGAC
ACGGAGGCGGTGGTGTGCATGCTTTGGCTTCAGTCGTGGCAGGCGAACAA
GGTGCGGGCGAGGCGGGGACCGAGAAGCGAGTGGTGGCCGCCACGGTGGA
CTTTTTCCGGCAGGGGAGCTACGCCCCTGCTCTTGCGGCAACCGCTCCTT
TGCTAGGCACGGGTTCTTCCTCAGCTGCTGCTGCTTCCGCTTCCGCTGCT
GCTGGTTGTCCGCCGAAGCACGTGCAAGGGCAGCCGAGGGACACGCAGGG
AACAAGCAGAAGCAGCACCTCCAGTCGCCAGCGAGAAAGCAAGGGTGCCG
GGGGGGGTAACGCCGCTGTGGGGATGGGAGGAGAGGCAGACACGGAGGCG
GTGGTGTGCATGCTTTGGCTTCAGGACGGAGGGGGCGAAGTCGTCGACGG
AGGGGGCGAAGTCGTC
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