mRNA_L-elsbetiae_contig9314.18316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9314.18316.1
Unique NamemRNA_L-elsbetiae_contig9314.18316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.060e-7
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 2 
Query:    2 LGVGLPVVLSKPTGQLVAVGVCNNSDGTIVSIDLDPREVVDQSTSGGYRVVHL 160
            L +G PVVL K + Q V +GVCNNSDG I  I+LDPRE    ST+G Y VV L
Sbjct:  131 LAIGAPVVLHK-SPQFVLLGVCNNSDGIIRGIELDPREGYASSTAG-YSVVTL 181
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BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.120e-7
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 2 
Query:    2 LGVGLPVVLSKPTGQLVAVGVCNNSDGTIVSIDLDPREVVDQSTSGGYRVVHL 160
            L +G PVVL K + Q V +GVCNNSDG I  I+LDPRE    ST+G Y VV L
Sbjct: 1838 LAIGAPVVLHK-SPQFVLLGVCNNSDGIIRGIELDPREGYASSTAG-YSVVTL 1888
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BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.790e-6
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 2 
Query:    2 LGVGLPVVLSKPTGQLVAVGVCNNSDGTIVSIDLDPREVVDQSTSGGYRVVHL 160
            L VG PVV+ K   Q V +GVCNNSDG I  I+LDPRE      + GY VV+L
Sbjct: 2076 LAVGAPVVVHKKP-QFVLLGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNL 2127
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BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 2 
Query:    2 LGVGLPVVLSKPTGQLVAVGVCNNSDGTIVSIDLDPREVVDQSTSGGYRVVHL 160
            L VG  VV+ K + Q V +GVCNNSDG I SI+LD RE     ++ G+ VV+L
Sbjct:   47 LAVGAAVVIHK-SPQFVLLGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYL 98
[Close]
BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.190e-5
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:    2 LGVGLPVVLSKPTGQLVAVGVCNNSDGTIVSIDLDPREVVDQSTSGGYRVVHL 160
            L VG PVV+ K   Q V +GVCNNSDG I  I+LDP E      + GY VV+L
Sbjct:  610 LAVGAPVVVHKRP-QFVLLGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNL 661
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9314.18316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2I1_ECTSI5.060e-758.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI5.120e-758.49ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE1.790e-654.72ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JCW5_9PHAE1.840e-550.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXW4_9PHAE2.190e-552.83ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9314contigL-elsbetiae_contig9314:2113..2416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.4571555-CDS-L-elsbetiae_contig9314:2113..21951622817001.4571555-CDS-L-elsbetiae_contig9314:2113..2195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 2114..2195 -
1691683974.052559-CDS-L-elsbetiae_contig9314:2113..21951691683974.052559-CDS-L-elsbetiae_contig9314:2113..2195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 2114..2195 -
1622817001.4679475-CDS-L-elsbetiae_contig9314:2336..24161622817001.4679475-CDS-L-elsbetiae_contig9314:2336..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 2337..2416 -
1691683974.0651567-CDS-L-elsbetiae_contig9314:2336..24161691683974.0651567-CDS-L-elsbetiae_contig9314:2336..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 2337..2416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9314.18316.1prot_L-elsbetiae_contig9314.18316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9314 2114..2416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9314.18316.1

>prot_L-elsbetiae_contig9314.18316.1 ID=prot_L-elsbetiae_contig9314.18316.1|Name=mRNA_L-elsbetiae_contig9314.18316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
PWRWAAGRLVQTNRTTCCRRSLQQFRWYHRQHRSRPSRSRRPEHFGRVPC
RAPS
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mRNA from alignment at L-elsbetiae_contig9314:2113..2416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9314.18316.1 ID=mRNA_L-elsbetiae_contig9314.18316.1|Name=mRNA_L-elsbetiae_contig9314.18316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=304bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:2113..2416- (Laminarionema elsbetiae ELsaHSoW15)
CCTTGGCGTTGGGCTGCCGGTCGTCTTGTCCAAACCAACAGGACAACTTG
TTGCCGTCGGAGTCTGCAACAATTCAGATGGTAAGGCGTGTAATGGTAAG
GCGTGTACACGAAAATCGATGAAACGCCTCCCGCATGTCTAACATTTGTA
TCCCTTCGTTTCTTACTCGATCTTGTATATGTTGTGACAAAGCCGTTGCC
TTGTCCGGGACTTTCTTCCAGGTACCATCGTCAGCATCGATCTAGACCCT
CGCGAAGTCGTCGACCAGAGCACTTCGGGAGGGTACCGTGTCGTGCACCT
AGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9314:2113..2416-

>mRNA_L-elsbetiae_contig9314.18316.1 ID=mRNA_L-elsbetiae_contig9314.18316.1|Name=mRNA_L-elsbetiae_contig9314.18316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:2113..2416- (Laminarionema elsbetiae ELsaHSoW15)
CCTTGGCGTTGGGCTGCCGGTCGTCTTGTCCAAACCAACAGGACAACTTG
TTGCCGTCGGAGTCTGCAACAATTCAGATGCCTTGGCGTTGGGCTGCCGG
TCGTCTTGTCCAAACCAACAGGACAACTTGTTGCCGTCGGAGTCTGCAAC
AATTCAGATGGTACCATCGTCAGCATCGATCTAGACCCTCGCGAAGTCGT
CGACCAGAGCACTTCGGGAGGGTACCGTGTCGTGCACCTAGTGTACCATC
GTCAGCATCGATCTAGACCCTCGCGAAGTCGTCGACCAGAGCACTTCGGG
AGGGTACCGTGTCGTGCACCTAGT
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