mRNA_L-elsbetiae_contig9311.18312.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9311.18312.1
Unique NamemRNA_L-elsbetiae_contig9311.18312.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9311.18312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9311contigL-elsbetiae_contig9311:7431..7868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size438
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.2674856-UTR-L-elsbetiae_contig9311:7430..75441622817001.2674856-UTR-L-elsbetiae_contig9311:7430..7544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9311 7431..7544 +
1691683973.9420526-UTR-L-elsbetiae_contig9311:7430..75441691683973.9420526-UTR-L-elsbetiae_contig9311:7430..7544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9311 7431..7544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.27835-CDS-L-elsbetiae_contig9311:7544..78681622817001.27835-CDS-L-elsbetiae_contig9311:7544..7868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9311 7545..7868 +
1691683973.9526107-CDS-L-elsbetiae_contig9311:7544..78681691683973.9526107-CDS-L-elsbetiae_contig9311:7544..7868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9311 7545..7868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9311.18312.1prot_L-elsbetiae_contig9311.18312.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9311 7545..7868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9311.18312.1

>prot_L-elsbetiae_contig9311.18312.1 ID=prot_L-elsbetiae_contig9311.18312.1|Name=mRNA_L-elsbetiae_contig9311.18312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MKDFSPVRPLPHTMYKRRPSPRPPKRGSSGKGCGSTFLACSQPVDPPPGG
LFVLLLLLLLLILTLALLSICVDDVKAGQDHVAKGKRPNPRKGEEACCVL
WSAPGQS*
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mRNA from alignment at L-elsbetiae_contig9311:7431..7868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9311.18312.1 ID=mRNA_L-elsbetiae_contig9311.18312.1|Name=mRNA_L-elsbetiae_contig9311.18312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig9311:7431..7868+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCGAACTACTGGATACGCATATATGTAGATATGTGTATCGGGCATGT
CGGGAAAAGGTGGAAACACTGCTTTATGTATCTAGACTAGACTTTTCATG
GGTACAAGCGATGGATGAAGGACTTTTCGCCGGTGCGCCCCTTACCCCAC
ACCATGTACAAGAGGCGTCCTTCGCCACGCCCCCCCAAGCGGGGTTCGAG
TGGCAAGGGCTGTGGATCAACATTCCTCGCCTGTTCCCAGCCAGTTGACC
CCCCCCCGGGGGGGTTGTTTGTTTTGTTGTTGTTGTTGTTGTTGTTGATT
CTCACATTAGCTCTCTTGTCCATCTGTGTTGACGACGTTAAGGCTGGCCA
GGATCACGTGGCTAAGGGGAAAAGGCCAAACCCCAGAAAAGGCGAAGAGG
CATGTTGTGTTTTGTGGTCCGCACCCGGCCAAAGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9311:7431..7868+

>mRNA_L-elsbetiae_contig9311.18312.1 ID=mRNA_L-elsbetiae_contig9311.18312.1|Name=mRNA_L-elsbetiae_contig9311.18312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig9311:7431..7868+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACTTTTCGCCGGTGCGCCCCTTACCCCACACCATGTACAAGAG
GCGTCCTTCGCCACGCCCCCCCAAGCGGGGTTCGAGTGGCAAGGGCTGTG
GATCAACATTCCTCGCCTGTTCCCAGCCAGTTGACCCCCCCCCGGGGGGG
TTGTTTGTTTTGTTGTTGTTGTTGTTGTTGTTGATTCTCACATTAGCTCT
CTTGTCCATCTGTGTTGACGACGTTAAGGCTGGCCAGGATCACGTGGCTA
AGGGGAAAAGGCCAAACCCCAGAAAAGGCGAAGAGGCATGTTGTGTTTTG
TGGTCCGCACCCGGCCAAAGCTGAATGAAGGACTTTTCGCCGGTGCGCCC
CTTACCCCACACCATGTACAAGAGGCGTCCTTCGCCACGCCCCCCCAAGC
GGGGTTCGAGTGGCAAGGGCTGTGGATCAACATTCCTCGCCTGTTCCCAG
CCAGTTGACCCCCCCCCGGGGGGGTTGTTTGTTTTGTTGTTGTTGTTGTT
GTTGTTGATTCTCACATTAGCTCTCTTGTCCATCTGTGTTGACGACGTTA
AGGCTGGCCAGGATCACGTGGCTAAGGGGAAAAGGCCAAACCCCAGAAAA
GGCGAAGAGGCATGTTGTGTTTTGTGGTCCGCACCCGGCCAAAGCTGA
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