mRNA_L-elsbetiae_contig9307.18307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9307.18307.1
Unique NamemRNA_L-elsbetiae_contig9307.18307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9307.18307.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.970e-23
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:  638 IRGCILYFFRFMAYGSVGPFKALIWRSKGLSEHQVGVLGAINPVASFFWTPVACAFADRHNIQQQVM 838
            +  C+LYFF FMA+G V PF  LIWRSKGLSEHQVG+LGAI PVASFF  PV CAFADRH+I QQV+
Sbjct:    7 VMACVLYFFLFMAHGCVAPFMPLIWRSKGLSEHQVGILGAIRPVASFFVNPVMCAFADRHSIHQQVV 73
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BLAST of mRNA_L-elsbetiae_contig9307.18307.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.660e-13
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  704 LIWRSKGLSEHQVGVLGAINPVASFFWTPVACAFADRHNIQQQVMR 841
            LIWRSKGLSEHQVG+LGAI PVASFF TPV CAFADRH+I QQ  R
Sbjct:    3 LIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQRWR 48
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BLAST of mRNA_L-elsbetiae_contig9307.18307.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.010e-12
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:  611 AMEPSSSSHIRGCILYFFRFMAYGSVGPFKALIWRSKGLSEHQVGVLGAINPVASFFWTPVACAFADRHNIQQ 829
            A+  +  S + GC LYFF FM+ GSV PF  +IWRSK LSE +VG+L A+ P+A     PV C+   ++ +QQ
Sbjct:    2 AVPSTGGSRLPGCALYFFLFMSLGSVMPFVPVIWRSKRLSETEVGLLAAVRPIALLLAGPVICSLIGKYGVQQ 74
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BLAST of mRNA_L-elsbetiae_contig9307.18307.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.590e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  731 EHQVGVLGAINPVASFFWTPVACAFADRHNIQQQVM 838
            E  VG+LGAINPVASFFWTPVACAFADRHNIQQQV+
Sbjct:    7 ESIVGLLGAINPVASFFWTPVACAFADRHNIQQQVV 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9307.18307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6H4_9PHAE3.970e-2373.13MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G3W1_ECTSI1.660e-1382.61MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4M5_ECTSI7.010e-1246.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEM5_9PHAE3.590e-1088.89MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9307contigL-elsbetiae_contig9307:4542..7233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D7G3W1
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons3
Model size1037
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9307.18307.1prot_L-elsbetiae_contig9307.18307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9307 5503..7214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.7347503-UTR-L-elsbetiae_contig9307:4541..51291622817000.7347503-UTR-L-elsbetiae_contig9307:4541..5129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 4542..5129 +
1691683973.5242016-UTR-L-elsbetiae_contig9307:4541..51291691683973.5242016-UTR-L-elsbetiae_contig9307:4541..5129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 4542..5129 +
1622817000.7468152-UTR-L-elsbetiae_contig9307:5477..55021622817000.7468152-UTR-L-elsbetiae_contig9307:5477..5502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 5478..5502 +
1691683973.5352666-UTR-L-elsbetiae_contig9307:5477..55021691683973.5352666-UTR-L-elsbetiae_contig9307:5477..5502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 5478..5502 +
1622817000.7805557-UTR-L-elsbetiae_contig9307:7214..72331622817000.7805557-UTR-L-elsbetiae_contig9307:7214..7233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 7215..7233 +
1691683973.5635066-UTR-L-elsbetiae_contig9307:7214..72331691683973.5635066-UTR-L-elsbetiae_contig9307:7214..7233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9307 7215..7233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.7579944-CDS-L-elsbetiae_contig9307:5502..56201622817000.7579944-CDS-L-elsbetiae_contig9307:5502..5620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 5503..5620 +
1691683973.5448844-CDS-L-elsbetiae_contig9307:5502..56201691683973.5448844-CDS-L-elsbetiae_contig9307:5502..5620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 5503..5620 +
1622817000.7695315-CDS-L-elsbetiae_contig9307:6927..72141622817000.7695315-CDS-L-elsbetiae_contig9307:6927..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 6928..7214 +
1691683973.5541015-CDS-L-elsbetiae_contig9307:6927..72141691683973.5541015-CDS-L-elsbetiae_contig9307:6927..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 6928..7214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9307.18307.1

>prot_L-elsbetiae_contig9307.18307.1 ID=prot_L-elsbetiae_contig9307.18307.1|Name=mRNA_L-elsbetiae_contig9307.18307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MEPSSSSHIRGCILYFFRFMAYGSVGPFKALIWRSKGLSEHQVGVLGAIN
PVASFFWTPVACAFADRHNIQQQVMRFPLPFVHYFFSFYATHSWSSTTSK
PAPITLNRRHNREKRAMQVSRAREYDKSLGKSGV*
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mRNA from alignment at L-elsbetiae_contig9307:4542..7233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9307.18307.1 ID=mRNA_L-elsbetiae_contig9307.18307.1|Name=mRNA_L-elsbetiae_contig9307.18307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2692bp|location=Sequence derived from alignment at L-elsbetiae_contig9307:4542..7233+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTCGGAAGGAAAAAAATGCGGAGAAAAAAAAAAAGAAGACGCTGTTT
TAGTGTAGGGAGCAACGCGTGTGACAAACGCACTGCAAAGTGTAGTACCT
CTAAGTACACTGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGCCG
CCAAAATAAATGGGAAGGACACGCAAACACACACACACACACATAGACGT
ACAGCCGCAGTTTTGCTGACGGTACTTCTAGATACATACACATATGTATG
TACATTCATATGTACTTGAGAGTCAGCGAGCACCACCTCATATCACCTGC
TGCGTCGTAATTTCTTCCCTAGGTCTTATGCTCTTGGTTTTTCGTCGACA
CCGCGCTTTGAGGTCACGGCTGGACCTTGTCGCTCCGGTTGACGACGCAT
GACCAGCGCATGACACAGCAGCAGCAAACAGCAGAAGAGACGGCCAAGAG
AACCAGGCCTGGTTACGGTTCGGGTGGTTCTGAACCACTTGCGGCGGAAA
ATGCGCGTATTGACGTCACAAGAGATTCGGGGCAGGCCGAAAACCCAGAG
CACGACCCCCACAGGAGAAGAAAGCTGTGACGCAGCAGGTGATATGATAC
AGTGAATGCAGACTTATGCGGCTGACCGCTTCTTAAAAACGAAATGTATT
TTTTGTAGTGTCTGAGGGCGTCAGGCTTGAATTGAAGTCCAGCAGCCATG
ATGATGGACTTTGACGTGGGTACGTATGACTATCTCTATGCATGTACACT
ACTCTGCAAGCACGATCCTGCATAGGCAAGCGAATTCAAAGGGGCACCTC
CTATTCACCCAACTATCCTTGCTTCATGAAGTATGACACGCACGCAACCT
GTGCGTGGGAGTTCGATTAGGATATCTTTATGTACTTATGACTTCTCGTA
GACCACGTTGTCATGAGCTCGCCTCGCTTTCGGCAGGCCCTTATCCTCCA
AAGGACCCGCGATGGAACCGAGTTCATCTTCGCACATTCGAGGATGTATC
CTGTACTTCTTTCGATTCATGGCGTATGGGAGCGTTGGGCCCTTCAAGGC
CCTCATCTGGCGTTCCAAGGGACTTTCCGGTGAAAAACGATTTGCATATT
TTTTGGGTAGCCTATCTGCATTTAGACTAAATATGGATGTACAAAACTGC
GAGTGGAATAGATTACTACTGTAACCCAAGGTTAGTTTACACCCCGACTC
CACAACAACACATCCGGTGATAATAATTCTAAGCGCAGAGCAGTTGGCCC
ATATATCGCATATATCACCCGGGGGCACCGAAGATTCTCCCCCCAGAGCC
CCAGAGGTTACGACGCTGTAATCTACACCCAGGGCGCGTATCTGTCACAC
CGGTTGTTATCGGTGATTGCGAGACCACCCACACCAGAAGCCAACGCAGC
GCAGCTGTGTATGGACGGATACCATCAGAAGCATGAGCCAGTACGGTGTC
GATTGCGATGCTAGATCCTGATGTTGAGCAAATGGCCGGGTTTGAAGGGC
AAACGGGGGACAAACACCTTTCGTTATCTTCCTCATGCCTCGGCGTAGGT
GTTTTGTAGCTTATCTCTTGGCTTTCTTAGGCGTATTCGTTCGAAATGTA
GACCACGGGTCATGGTTTTGTTCTATTTTTTTCTCTACTGAGTTAAAGTG
GGTAGACTATTCAACAACATCAGTCTTCGTGGGATTTTTCGTTGGTTTCT
ACGATCCCCTGCTTGAATACGATTATTTTAATAGGTGTACGCACGCGTTT
TTACACCAGGCGTTGATGGTACGCATTTTATGAAGGTCTGCCCTTATTTT
CAACGAGTTTGATGGCGTGCATGCATGGGTTTCATGTACAGGTAAGCACA
GAGACTGTTTTGCGACAACCCTTTGCTGTCACCCTGTCTTGTTTTCATAA
TACCTCCTGGAGAACTGAAGTAATGGTTGTTCGCGGGCAGTGATACCACA
CCCCATCGTTTAAACCTAAACGCTTCACCGGGTGTTTTATTATCGTGTAG
TATTGAAAACATAGGCGTAAGGGTGGTCTCCACAATAGTAGTATACTGTA
GTGTACGTGCGCATGATGACAGATACATGGCGCCGCCAGTTAGGGGAATA
ATCTTACGGAGTGTTTTGTTTTTACCCCGAGGCTCTGGTTATGTTTAAAA
AAATAAAGTTTGTTCTCTGTAGGGCGATCGTACCTCTCTAAACTAGGTAA
AGCATCTTCTCATCCGGGCGTCTCAAAAGTGTTACCGATCAGTCAATGAA
TGTTCTCATATTTTTTATTCTTTGAGGCTCAATTAATCACCAGTTTCATG
TGGAAAGGCGCACCTTGTATTCTTTAAGATTGAAACAACCTCTGGGGTTC
CCTACATATGATGTTGTTACCGTCACCGCTGAGCAGAGCATCAAGTTGGC
GTGCTGGGCGCCATCAATCCGGTCGCCTCTTTTTTCTGGACCCCAGTCGC
CTGTGCCTTCGCGGACAGACACAATATTCAGCAGCAGGTGATGCGTTTTC
CCTTGCCCTTTGTCCATTATTTTTTTTCGTTTTATGCAACCCATTCATGG
TCTTCCACGACGTCTAAACCCGCACCCATAACTCTGAACCGGCGTCACAA
TCGAGAGAAGCGTGCGATGCAAGTTTCGAGAGCACGGGAATATGATAAGT
CGCTCGGAAAGAGTGGTGTGTAAATCGTTTCCACGCATGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9307:4542..7233+

>mRNA_L-elsbetiae_contig9307.18307.1 ID=mRNA_L-elsbetiae_contig9307.18307.1|Name=mRNA_L-elsbetiae_contig9307.18307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig9307:4542..7233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACCGAGTTCATCTTCGCACATTCGAGGATGTATCCTGTACTTCTT
TCGATTCATGGCGTATGGGAGCGTTGGGCCCTTCAAGGCCCTCATCTGGC
GTTCCAAGGGACTTTCCGATGGAACCGAGTTCATCTTCGCACATTCGAGG
ATGTATCCTGTACTTCTTTCGATTCATGGCGTATGGGAGCGTTGGGCCCT
TCAAGGCCCTCATCTGGCGTTCCAAGGGACTTTCCGAGCATCAAGTTGGC
GTGCTGGGCGCCATCAATCCGGTCGCCTCTTTTTTCTGGACCCCAGTCGC
CTGTGCCTTCGCGGACAGACACAATATTCAGCAGCAGGTGATGCGTTTTC
CCTTGCCCTTTGTCCATTATTTTTTTTCGTTTTATGCAACCCATTCATGG
TCTTCCACGACGTCTAAACCCGCACCCATAACTCTGAACCGGCGTCACAA
TCGAGAGAAGCGTGCGATGCAAGTTTCGAGAGCACGGGAATATGATAAGT
CGCTCGGAAAGAGTGGTGTGTAAAGCATCAAGTTGGCGTGCTGGGCGCCA
TCAATCCGGTCGCCTCTTTTTTCTGGACCCCAGTCGCCTGTGCCTTCGCG
GACAGACACAATATTCAGCAGCAGGTGATGCGTTTTCCCTTGCCCTTTGT
CCATTATTTTTTTTCGTTTTATGCAACCCATTCATGGTCTTCCACGACGT
CTAAACCCGCACCCATAACTCTGAACCGGCGTCACAATCGAGAGAAGCGT
GCGATGCAAGTTTCGAGAGCACGGGAATATGATAAGTCGCTCGGAAAGAG
TGGTGTGTAA
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