mRNA_L-elsbetiae_contig9274.18282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9274.18282.1
Unique NamemRNA_L-elsbetiae_contig9274.18282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9274.18282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9274contigL-elsbetiae_contig9274:4831..5321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.8213298-UTR-L-elsbetiae_contig9274:4830..50181622816998.8213298-UTR-L-elsbetiae_contig9274:4830..5018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9274 4831..5018 +
1691683972.1517792-UTR-L-elsbetiae_contig9274:4830..50181691683972.1517792-UTR-L-elsbetiae_contig9274:4830..5018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9274 4831..5018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.833655-CDS-L-elsbetiae_contig9274:5018..53211622816998.833655-CDS-L-elsbetiae_contig9274:5018..5321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 5019..5321 +
1691683972.1619892-CDS-L-elsbetiae_contig9274:5018..53211691683972.1619892-CDS-L-elsbetiae_contig9274:5018..5321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9274 5019..5321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9274.18282.1prot_L-elsbetiae_contig9274.18282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9274 5019..5321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9274.18282.1

>prot_L-elsbetiae_contig9274.18282.1 ID=prot_L-elsbetiae_contig9274.18282.1|Name=mRNA_L-elsbetiae_contig9274.18282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAYTRAPPTINQPFQPPQHKNATRYSTTPHNKLDRRTNGRSRPGNDREQS
SDLGSARTTSHTAPTKRRGDPGVFRHRNHPRIHTHNTIYSYHFLQGKTNF
D
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mRNA from alignment at L-elsbetiae_contig9274:4831..5321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9274.18282.1 ID=mRNA_L-elsbetiae_contig9274.18282.1|Name=mRNA_L-elsbetiae_contig9274.18282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig9274:4831..5321+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAGCGGTGGCAGGCTCAGTAGGTCCGCAACCCTGGACGAGAAGGTG
GGGGTGGGATACAAAGACAGGAGACAGGGAAGGGTGAGAAACATATACCT
ACCTGAAAAAAGCGAGGGAAAGCGTTGAAATGGTGTCGTTTGCCTTGGTT
CTGTTTTTCTCCTCTTCAAATTAACACCTCTGTCCTTTATGGCCTACACG
AGAGCCCCCCCCACCATCAACCAACCCTTCCAGCCGCCACAACACAAAAA
CGCCACCAGGTATTCGACAACACCCCACAATAAACTTGACAGACGGACGA
ACGGAAGAAGCCGTCCAGGCAACGATAGGGAACAGAGCTCAGATCTAGGC
TCGGCTCGTACCACGAGCCACACCGCACCAACAAAACGGCGAGGAGATCC
CGGCGTTTTTCGTCATCGCAATCACCCGAGAATTCACACACACAACACAA
TATACTCCTATCACTTTCTCCAAGGAAAGACAAACTTCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9274:4831..5321+

>mRNA_L-elsbetiae_contig9274.18282.1 ID=mRNA_L-elsbetiae_contig9274.18282.1|Name=mRNA_L-elsbetiae_contig9274.18282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig9274:4831..5321+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTACACGAGAGCCCCCCCCACCATCAACCAACCCTTCCAGCCGCC
ACAACACAAAAACGCCACCAGGTATTCGACAACACCCCACAATAAACTTG
ACAGACGGACGAACGGAAGAAGCCGTCCAGGCAACGATAGGGAACAGAGC
TCAGATCTAGGCTCGGCTCGTACCACGAGCCACACCGCACCAACAAAACG
GCGAGGAGATCCCGGCGTTTTTCGTCATCGCAATCACCCGAGAATTCACA
CACACAACACAATATACTCCTATCACTTTCTCCAAGGAAAGACAAACTTC
GATATGGCCTACACGAGAGCCCCCCCCACCATCAACCAACCCTTCCAGCC
GCCACAACACAAAAACGCCACCAGGTATTCGACAACACCCCACAATAAAC
TTGACAGACGGACGAACGGAAGAAGCCGTCCAGGCAACGATAGGGAACAG
AGCTCAGATCTAGGCTCGGCTCGTACCACGAGCCACACCGCACCAACAAA
ACGGCGAGGAGATCCCGGCGTTTTTCGTCATCGCAATCACCCGAGAATTC
ACACACACAACACAATATACTCCTATCACTTTCTCCAAGGAAAGACAAAC
TTCGAT
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