mRNA_L-elsbetiae_contig9262.18274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9262.18274.1
Unique NamemRNA_L-elsbetiae_contig9262.18274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9262.18274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9262contigL-elsbetiae_contig9262:3251..4231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.064656-CDS-L-elsbetiae_contig9262:3250..33691622816998.064656-CDS-L-elsbetiae_contig9262:3250..3369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9262 3251..3369 -
1691683971.4882412-CDS-L-elsbetiae_contig9262:3250..33691691683971.4882412-CDS-L-elsbetiae_contig9262:3250..3369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9262 3251..3369 -
1622816998.0763273-CDS-L-elsbetiae_contig9262:3816..42311622816998.0763273-CDS-L-elsbetiae_contig9262:3816..4231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9262 3817..4231 -
1691683971.5019937-CDS-L-elsbetiae_contig9262:3816..42311691683971.5019937-CDS-L-elsbetiae_contig9262:3816..4231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9262 3817..4231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9262.18274.1prot_L-elsbetiae_contig9262.18274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9262 3251..4231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9262.18274.1

>prot_L-elsbetiae_contig9262.18274.1 ID=prot_L-elsbetiae_contig9262.18274.1|Name=mRNA_L-elsbetiae_contig9262.18274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
KGVDAANTPAATGGPGAPGGPGPSPQGGESGGNKKKQRKTPAVKRAPSKG
KAAAKGGGGGGRDERSAISFAVPGALPSAAALGGKGNGAAAGAYAATGAA
AAVRGMASFGAGGAGAGSGRVPSQWSPGLMINVPEEAEGDAPTSAGTPGS
AHAGGVGGFGAERVAVSFKSGNSNKTSK
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mRNA from alignment at L-elsbetiae_contig9262:3251..4231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9262.18274.1 ID=mRNA_L-elsbetiae_contig9262.18274.1|Name=mRNA_L-elsbetiae_contig9262.18274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=981bp|location=Sequence derived from alignment at L-elsbetiae_contig9262:3251..4231- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTGTCGATGCCGCCAACACTCCCGCGGCGACAGGGGGGCCAGGAGC
TCCGGGAGGACCAGGACCTTCCCCGCAGGGAGGAGAGAGCGGCGGGAACA
AAAAGAAGCAGAGGAAGACGCCAGCGGTGAAGAGAGCGCCGTCAAAGGGT
AAAGCGGCGGCCAAGGGAGGAGGAGGAGGAGGAAGAGACGAAAGAAGCGC
CATCTCTTTCGCTGTCCCCGGCGCTCTCCCTTCCGCTGCGGCGCTTGGTG
GCAAGGGCAACGGTGCCGCAGCCGGGGCGTATGCTGCCACCGGTGCCGCT
GCCGCCGTTCGGGGCATGGCCAGTTTCGGGGCTGGTGGTGCCGGCGCCGG
GAGCGGTAGGGTGCCGTCGCAGTGGTCTCCGGGGCTCATGATCAACGTGC
CAGAAGAAGCAGAAGGCGAGTGAGGTCGGAGATGAGGGGACCAGCGGCGG
GTGTTGGGGTGTGTTTGGAATCGTGAGGGCGTTTTTGCCGTCGAGCGTTT
GAGAATTCCGCGCTTTACGGCCTGTTTGTGTTTCCCGTATGTAGAGCTCG
CGCGACTTTGCGTCCAATTATCGAATGTGTCAAACGCACATTTCGATTGT
TTTTAAGTGTCGAGTGTTAAGTGTTGGTTGCTCTCGAAGTGGGTCTGTCC
TTCGGAGAAGCACGGTTTCCTTTCAGCCGGGTGTGTTGTCGCCTTCATAC
ACGACCACACAGCTTGAACCTCGCGCACGTAGTGCTGCGTTGCTGCTGCC
GCCGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCAACCCCAGGCTT
GAATCGGCTGATCGTCTCTTGCCCTTGCTCTTGCTCTTGCCCTCGCTCTT
CCCCTTCTCTAGGCGACGCCCCGACTTCTGCTGGTACACCAGGTTCGGCT
CATGCTGGCGGCGTCGGGGGCTTCGGTGCGGAACGGGTGGCGGTCTCCTT
CAAGAGCGGTAACAGCAACAAGACTAGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9262:3251..4231-

>mRNA_L-elsbetiae_contig9262.18274.1 ID=mRNA_L-elsbetiae_contig9262.18274.1|Name=mRNA_L-elsbetiae_contig9262.18274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig9262:3251..4231- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGTGTCGATGCCGCCAACACTCCCGCGGCGACAGGGGGGCCAGGAGC
TCCGGGAGGACCAGGACCTTCCCCGCAGGGAGGAGAGAGCGGCGGGAACA
AAAAGAAGCAGAGGAAGACGCCAGCGGTGAAGAGAGCGCCGTCAAAGGGT
AAAGCGGCGGCCAAGGGAGGAGGAGGAGGAGGAAGAGACGAAAGAAGCGC
CATCTCTTTCGCTGTCCCCGGCGCTCTCCCTTCCGCTGCGGCGCTTGGTG
GCAAGGGCAACGGTGCCGCAGCCGGGGCGTATGCTGCCACCGGTGCCGCT
GCCGCCGTTCGGGGCATGGCCAGTTTCGGGGCTGGTGGTGCCGGCGCCGG
GAGCGGTAGGGTGCCGTCGCAGTGGTCTCCGGGGCTCATGATCAACGTGC
CAGAAGAAGCAGAAGAAGGGTGTCGATGCCGCCAACACTCCCGCGGCGAC
AGGGGGGCCAGGAGCTCCGGGAGGACCAGGACCTTCCCCGCAGGGAGGAG
AGAGCGGCGGGAACAAAAAGAAGCAGAGGAAGACGCCAGCGGTGAAGAGA
GCGCCGTCAAAGGGTAAAGCGGCGGCCAAGGGAGGAGGAGGAGGAGGAAG
AGACGAAAGAAGCGCCATCTCTTTCGCTGTCCCCGGCGCTCTCCCTTCCG
CTGCGGCGCTTGGTGGCAAGGGCAACGGTGCCGCAGCCGGGGCGTATGCT
GCCACCGGTGCCGCTGCCGCCGTTCGGGGCATGGCCAGTTTCGGGGCTGG
TGGTGCCGGCGCCGGGAGCGGTAGGGTGCCGTCGCAGTGGTCTCCGGGGC
TCATGATCAACGTGCCAGAAGAAGCAGAAGGCGACGCCCCGACTTCTGCT
GGTACACCAGGTTCGGCTCATGCTGGCGGCGTCGGGGGCTTCGGTGCGGA
ACGGGTGGCGGTCTCCTTCAAGAGCGGTAACAGCAACAAGACTAGCAAGG
CGACGCCCCGACTTCTGCTGGTACACCAGGTTCGGCTCATGCTGGCGGCG
TCGGGGGCTTCGGTGCGGAACGGGTGGCGGTCTCCTTCAAGAGCGGTAAC
AGCAACAAGACTAGCAAG
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