mRNA_L-elsbetiae_contig9260.18273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9260.18273.1
Unique NamemRNA_L-elsbetiae_contig9260.18273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 3.760e-101
Identity = 169/207 (81.64%), Postives = 178/207 (85.99%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQV*LEGAQTSSGGLNMPTPH------TERMPPRLIRRLTQDAVE 882
            +  LLFVDEADAFLRRRNTETISEDL NALNAFLYRTGESTDKFMLVYASNQPEQFDWAVN RIDEMV F LPGREERLR +NLYMK YLLD PG+AKVI VDG+EDS+LQ+VADLTEGFSGR+IAKLAIAWQAAAYGT DSSF AEL TEVL AHLQQKRQKQ  LEGAQTSSGGL MP P        E +PPRL+R LTQDA E
Sbjct:  413 KGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVRFDLPGREERLRMVNLYMKNYLLDPPGKAKVIRVDGIEDSHLQDVADLTEGFSGREIAKLAIAWQAAAYGTPDSSFNAELMTEVLQAHLQQKRQKQAWLEGAQTSSGGLIMPPPSETAGATVEPIPPRLVRTLTQDAPE 619
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 242 bits (617), Expect = 7.700e-72
Identity = 124/163 (76.07%), Postives = 139/163 (85.28%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQK 768
            +  LLFVDEADAFLRRR+TE ISEDL NALNAFLYRTGE+TDKFMLVYASNQPEQFDWAVN RIDEMVPF LPGR+ER+R +NLYM  +LL   G+AK I V GVEDS+LQ  AD TEGFSGR+I+KLAIAWQAAAYG++ ++FT EL  EVLD HLQQK QK
Sbjct:  399 KGLLLFVDEADAFLRRRSTERISEDLRNALNAFLYRTGEATDKFMLVYASNQPEQFDWAVNDRIDEMVPFELPGRDERMRMINLYMNKFLLAKTGKAKTIVVQGVEDSHLQAAADATEGFSGREISKLAIAWQAAAYGSAGTTFTPELMQEVLDNHLQQKWQK 561
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.320e-65
Identity = 109/171 (63.74%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDL--------PGRAKVITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQK 768
            R  LLF+DE+DAFLR+R+TE +SEDL NALNAFLYRTGE T+KFMLVYASNQPEQFDWA+N RIDEMV F LP +EER+R + LYM  YL           P   K++ V+GVEDS ++ +AD TEGFSGR+I+KLAIAWQAAAYG++D++FT EL   VL+AH++QK++K
Sbjct:   65 RGLLLFIDESDAFLRKRSTEAMSEDLRNALNAFLYRTGEPTNKFMLVYASNQPEQFDWAINDRIDEMVEFALPSKEERVRMIQLYMDKYLYRSGEGGGFFSPASTKIL-VNGVEDSNIESIADRTEGFSGREISKLAIAWQAAAYGSADATFTVELMESVLEAHIEQKQRK 234
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA)

HSP 1 Score: 210 bits (534), Expect = 9.100e-64
Identity = 114/178 (64.04%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAK--VITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQV*LEGAQTSSGG 807
            +  LLFVDEADAFLRRR+ E ISEDL NALNAFLYRTGE+T KFMLVYASNQP+QFDWA+N RIDEMV F LPG EER R ++LYMK YLLD    AK   ITV+ +ED+++ E A  TE FSGR+IAKLAIAWQAAAYG+ D++F   +   VL+ H  QK QK+  L+     SGG
Sbjct:   53 KGLLLFVDEADAFLRRRSVEHISEDLRNALNAFLYRTGEATGKFMLVYASNQPDQFDWAINDRIDEMVEFQLPGLEERKRMVSLYMKKYLLDQQDAAKGRAITVEDIEDNHIDEAAKATEHFSGREIAKLAIAWQAAAYGSVDATFNPSIMRSVLEVHCLQKAQKEAWLK----KSGG 226
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.180e-58
Identity = 108/178 (60.67%), Postives = 133/178 (74.72%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAK-----VITVDGVEDSY---LQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQV*LEGA 789
            +  LLF+DE+DAFLR+R+TE ISEDL NALNAFLYRTGE TDKFMLVYASNQPEQFDWAVN RIDEMV F LPG EER R +++Y+  YL D  G +      V++ DG    Y   L + A  T+GFSGR+IAKLAIAWQA+AYG+SD++FT +L    L AH+ QK++K++  E A
Sbjct:  331 KGLLLFIDESDAFLRKRSTENISEDLRNALNAFLYRTGEPTDKFMLVYASNQPEQFDWAVNDRIDEMVEFDLPGLEERRRMIDMYLSKYLRDAEGSSSGAKKIVVSFDGEGGGYDKILDQAAARTDGFSGREIAKLAIAWQASAYGSSDNTFTEQLLDSTLSAHIDQKKRKELWNEAA 508
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2WET7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WET7_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.140e-57
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITV-DGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQ 771
            R  LLFVDE+DAFLR+R+T+ ISED+ NALNAFL+RTGE++DKFM+VYASNQPEQFDWA+N RIDEMV F LPG EER R +  YM   LL  P +A  IT+ D V+++ +      TE FSGR+I+KLAIAWQAAAYGTS  +   +L  EVLD HLQQKRQK+
Sbjct:  169 RGLLLFVDESDAFLRKRSTQYISEDMRNALNAFLFRTGEASDKFMIVYASNQPEQFDWAINDRIDEMVEFALPGFEERRRMIAYYMHS-LLSSPTQATPITIADDVDEAAVDSAVHATENFSGREISKLAIAWQAAAYGTSPPTLNLQLLYEVLDQHLQQKRQKE 332
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2V1G8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1G8_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.320e-57
Identity = 108/194 (55.67%), Postives = 132/194 (68.04%), Query Frame = 1 
Query:  295 FVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLD---------------LPGRAKV----------ITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQV*LEGAQTSS 801
            FVDEADAFLRRR+TE ISEDL NALNAFLYRTGE+TD+FM+VYASNQPEQFD A+N RIDEMV F LPG EER R +  Y++ YLLD                P    V          +TVDG+E+ +++  AD TEGFSGR+I+KLAIAWQAAAYG   + FT  L   VL+ H++QKR+K + L+    S+
Sbjct:    1 FVDEADAFLRRRSTEQISEDLRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDEMVHFKLPGLEERQRMLTHYLRHYLLDGHHHGEDIFDQKTDGKPAGKSVSGFFGAAPTQVTVDGIEERHIRFAADRTEGFSGREISKLAIAWQAAAYGNEKAHFTPALMERVLEDHVEQKRKKHLWLDDVTKST 194
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.230e-56
Identity = 115/196 (58.67%), Postives = 134/196 (68.37%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQV*----LEGAQTSSGGLNMPTPHTERMPPRLI 855
            R  +LFVDEADAFLRRR+TE ISED+ NALNAFLYRTGE+TD+FM+VYASNQPEQFD A+N RIDE+VPF LPG EER R ++ YM  YLL+       I   GVE+ ++   A  TEGFSGR+I+KLAIAWQAAAYG+    FT EL  EVL A L QK  KQ      +EG         MP    E MP RL+
Sbjct:  368 RGVVLFVDEADAFLRRRSTEVISEDMRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDELVPFDLPGVEERRRMLDSYMLKYLLEAHAARSGIAALGVEEHHMAAAAAATEGFSGREISKLAIAWQAAAYGSEKCEFTPELMEEVLQAFLAQKATKQAWDADAMEGHVDEDAADGMPLRGYEGMP-RLV 562
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S3HKW4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKW4_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.600e-55
Identity = 96/160 (60.00%), Postives = 126/160 (78.75%), Query Frame = 1 
Query:  289 LLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITVDGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQK 768
            L+FVDEADAFLR+R+TE ISED+ NALNAFLYRTGE++ KFM+VYASNQPEQFDWA+N RID+MV F LP  +ER+R ++ YM  +LL  P  +K ITV+GV+++ ++  A  TEG+SGR+I+KLAIAWQAAAYGT +++   +L  +VL      K+QK
Sbjct:  209 LIFVDEADAFLRKRSTERISEDMRNALNAFLYRTGEASYKFMIVYASNQPEQFDWAINDRIDDMVEFRLPSFDERVRMISQYMDSFLLHPPAGSKTITVEGVDEALIRSFASATEGYSGREISKLAIAWQAAAYGTDNATIDVDLLQQVLRESKHSKQQK 368
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BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Match: A0A7S2WDW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDW3_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.510e-55
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 1 
Query:  280 RAFLLFVDEADAFLRRRNTETISEDLLNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNYRIDEMVPFGLPGREERLRNMNLYMKGYLLDLPGRAKVITV-DGVEDSYLQEVADLTEGFSGRDIAKLAIAWQAAAYGTSDSSFTAELTTEVLDAHLQQKRQKQ 771
            R  LLFVDE+DAFLR+R+T+ ISED+ NALNAFL+RTGE++DKFM+VYASNQPEQFDWA+N RIDEMV F LPG EER R +  YM   LL  P +A  IT+ D V+++ +      TE FSGR+I+KLAIAWQAAAYGTS  +   +L  EVLD HLQQKRQK+
Sbjct:  380 RGLLLFVDESDAFLRKRSTQYISEDMRNALNAFLFRTGEASDKFMIVYASNQPEQFDWAINDRIDEMVEFALPGFEERRRMIAYYMHS-LLSSPTQATPITIADDVDEAAVDSAVHATENFSGREISKLAIAWQAAAYGTSPPTLNLQLLYEVLDQHLQQKRQKE 543
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9260.18273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJ37_9PHAE3.760e-10181.64AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YR91_9STRA7.700e-7276.07AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2WW12_9STRA5.320e-6563.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2Y4I1_9STRA9.100e-6464.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2D4S5_9STRA3.180e-5860.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WET7_9STRA2.140e-5763.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V1G8_9STRA5.320e-5755.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836C9L2_9STRA3.230e-5658.67AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3HKW4_9STRA1.600e-5560.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2WDW3_9STRA2.510e-5563.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9260contigL-elsbetiae_contig9260:2350..7200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LFV8
Preferred nameATAD3A
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons6
Model size907
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9260.18273.1prot_L-elsbetiae_contig9260.18273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9260 2424..7081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.9418678-UTR-L-elsbetiae_contig9260:2349..24231622816997.9418678-UTR-L-elsbetiae_contig9260:2349..2423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9260 2350..2423 -
1691683971.4036407-UTR-L-elsbetiae_contig9260:2349..24231691683971.4036407-UTR-L-elsbetiae_contig9260:2349..2423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9260 2350..2423 -
1622816998.0312512-UTR-L-elsbetiae_contig9260:7081..72001622816998.0312512-UTR-L-elsbetiae_contig9260:7081..7200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9260 7082..7200 -
1691683971.4783666-UTR-L-elsbetiae_contig9260:7081..72001691683971.4783666-UTR-L-elsbetiae_contig9260:7081..7200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9260 7082..7200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.958055-CDS-L-elsbetiae_contig9260:2423..25151622816997.958055-CDS-L-elsbetiae_contig9260:2423..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 2424..2515 -
1691683971.4163375-CDS-L-elsbetiae_contig9260:2423..25151691683971.4163375-CDS-L-elsbetiae_contig9260:2423..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 2424..2515 -
1622816997.9698472-CDS-L-elsbetiae_contig9260:3110..32541622816997.9698472-CDS-L-elsbetiae_contig9260:3110..3254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 3111..3254 -
1691683971.4264882-CDS-L-elsbetiae_contig9260:3110..32541691683971.4264882-CDS-L-elsbetiae_contig9260:3110..3254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 3111..3254 -
1622816997.979841-CDS-L-elsbetiae_contig9260:4260..44551622816997.979841-CDS-L-elsbetiae_contig9260:4260..4455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 4261..4455 -
1691683971.4376538-CDS-L-elsbetiae_contig9260:4260..44551691683971.4376538-CDS-L-elsbetiae_contig9260:4260..4455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 4261..4455 -
1622816997.9931777-CDS-L-elsbetiae_contig9260:4997..51301622816997.9931777-CDS-L-elsbetiae_contig9260:4997..5130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 4998..5130 -
1691683971.4482174-CDS-L-elsbetiae_contig9260:4997..51301691683971.4482174-CDS-L-elsbetiae_contig9260:4997..5130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 4998..5130 -
1622816998.0038078-CDS-L-elsbetiae_contig9260:5583..57261622816998.0038078-CDS-L-elsbetiae_contig9260:5583..5726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 5584..5726 -
1691683971.4583504-CDS-L-elsbetiae_contig9260:5583..57261691683971.4583504-CDS-L-elsbetiae_contig9260:5583..5726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 5584..5726 -
1622816998.0170362-CDS-L-elsbetiae_contig9260:7074..70811622816998.0170362-CDS-L-elsbetiae_contig9260:7074..7081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 7075..7081 -
1691683971.4684877-CDS-L-elsbetiae_contig9260:7074..70811691683971.4684877-CDS-L-elsbetiae_contig9260:7074..7081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9260 7075..7081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9260.18273.1

>prot_L-elsbetiae_contig9260.18273.1 ID=prot_L-elsbetiae_contig9260.18273.1|Name=mRNA_L-elsbetiae_contig9260.18273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MVRPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDTVTEMHKVFDWAQ
ASRKGLSLVRRRGGRVPKAAQHGDHQRGPPQRPERLPLPHGRVHGQVYAG
VRVESAGAVRLGGKLPDRRDGALRPPRPRRAAAQYEPLHEGLPPGPSRQG
QGHHGGRGGGLLPAGSGGPDGGLLGARHRQACHRVAGGGVRHERLLLHGR
AHDGSFGCAPAAEETEAGVTRGGADQLGGVEYAHPPH*
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mRNA from alignment at L-elsbetiae_contig9260:2350..7200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9260.18273.1 ID=mRNA_L-elsbetiae_contig9260.18273.1|Name=mRNA_L-elsbetiae_contig9260.18273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4851bp|location=Sequence derived from alignment at L-elsbetiae_contig9260:2350..7200- (Laminarionema elsbetiae ELsaHSoW15)
GGAAGACGCTCTCAGCGGCGTGGTGCTAGAGAAGAGCCTGGAGACCAGGC
TTTCGAGGGTTGCGCAGTCGACGTTCAACACCAGGCGAAATAACGACCCC
TCCCGACACCTGCTCCTGTATGGTAAGCTGCGGCTAGCACGCTGAGATAC
CTCTGCCGGTACTAAATAGCCGGTGTGCACTCTTTTGGTGTTCGGTGCTT
GTGCTGTGTAAGAAGTACCGAGGTTGGCGGTGTTTTATTTATTTACTGCC
TGTGCGTTGGTATGGGGACTACTGCTGTGTAGTGGTTTCAAGCGGTGGTT
CGCTCGTGAGTGTTTTTGCCTCGATTTGCTGGATATTTTTGCGCCGTCGA
CTTTCCAACTCCCAAGCGGAAGAGCGCTCGTGTCGAACACCTCTCGCTTC
GAGTTTGGTGGTGTTGTTTACTGCTGCTGTGTTAGGCTACCGTAGGTGAC
ACAGGATACCATCCCCCCCCCGGACATATTTTCAAAGTTCGATTCCTCCC
CAGCAAGAAGAGTGCCAGTGCCGAAAGGAGGTGGCGTTGGAAAGGTCTAG
TCGAGGGCTGTCCAAAAATGTATCGTTTGGTGCTGGCACCCTCGTGGGTA
CAGAGTAGTCGGGGTTTGAAAATCTGTCCTGGGGGTGTGGTATATTGTGT
CACCTACGGACGGTATAGTGGTGAGGATGATGCTGGGGCCGCTTGTTTAT
GAAAACGTTTACCTCCTGTAATAGAGGGGCCGATAGGCGAGTTTAGTGGT
TCGACCTACAGCTGCTGTGTTAAGCTATAATGGTAAGGGTGATGCCGGGG
TCGCTTGTTTGCCAAAAAAATGTCTTGCATAGAACATGTAGAGGAACGCC
AATAGTATAGGCCTTGTGTACCACTTCGCCCGCCTTGGTTGTTATCCTTG
CTCCCTGCCCAGTTTCTTCTTTCTGTCACTGCTGCAGCTTTGGCCACCCG
ATGTTTCGAAACTATTTTTGCTTGCGCTGTCCGATGTTGGTAGAGTTTTC
CGAGTTGAGCAGCATGAAAGTCGAACGCCGACGATATCAACAACCAACCC
AAAGCAGCAGTATCAGCAGTGCCACTATTTATTTTTATTACCTGATGGGC
TTGTTACCCAAGCAGCAGAACCAGTAGTGTCAGTATACCCACCTCAACTT
ATATGTACTCTTATGAAGAGTTATTTTCTCGCCCCGTGTACTTTTTTGGC
AGCGGGGTGACAAACCCTCCAACCACGCGCTAAACAAAGTTGGGCCTCTC
CCCGGAGTATCTTCTGGTTGGCCTGTCAGAGTTGTGCAGGGGAAGGTTTG
GATTTTTCTGTCACATAACATGTTGGGTGTTTTTGTTGTCGGCGGGACCA
ATACCTCTTCACTACGATATTACTGCTCTATTGGACCGTTAATTCACAAC
GGAGTTCCGTCTCTAATGTGAGGAGATTCGTCCTGTGATTTCCTGATTTC
TTAAAAGAAAAAAAAGAAAAACAGGACCGGGGACCGGTAAGACGCTCTTC
GCCAAGGGCCTGGCACGCCACTCGGGCCTGGAGTACGCCATCATGACTGG
CGGCGACATCGCGCCCCTTGGGAGGGACACCGTGACGGAGATGCACAAGG
TCTTCGACTGGGCTCAGGTATTGTTCCATCTATGTACAGAGGCTCCGTTT
GTTTTCCGCCGTTTCCCCGTGGAATATATGTGTAGTCCGTGGATGTAGCG
TATCATTTTATTTTTTGCTGCTTTTTCCCATGAAATGTATGTATGTAGTT
TATGTAGCGTAATACTTTTTGTTTGTTTTGCGCTAAAGTATGCGAATACC
ACGAGCAGAACATTGTGCGTGGCGCTTAAAAGTACGTTCCGTATCCAACG
CTTTGGTAGCCTCACTTCTACTACTCATTTCCCCTACCTTGATTCCCCTC
TTAAGCCTCTTTTGTGTGTTGACGGTGTGCATGTTACATACAGAGGCATG
AACCGAAGACGGAGTGTGTTTTGGGGACTATTGTACTGAGAACTGAAGAG
ATTGGCATTTAATCGTTTATGCCTGTCTGTCCGTGCCCGTCTGTCCGTCT
ATCTGCCCGTCTATCTGTAGGCGAGCCGCAAGGGCCTTTCTCTTGTTCGT
CGACGAGGCGGACGCGTTCCTAAGGCGGCGCAACACGGAGACCATCAGCG
AGGACCTCCTCAACGCCCTGAACGCCTTCCTCTACCGCACGGGAGAGTCC
ACGGTGAGAGCTACATACGGCAGTTCGCTCCTCCCATCGCATCACATCAC
AGCGTGCATGAAACGCGAAAAAAAGACATTCGAGACGCCCTTGTATCACT
GCTGTATCGTGGTGAGCTGTGGTGGTTGGAGAGTCTGCGTATAGTTTTGG
TCCGTTGTACACCTGCATCACGTTACGGTTGCGGTGGAAGGAAGTCCATG
TCCGGCTAGGAAGCCAGTAGTGATAATAGACGGTCATCTATGTCACTGGA
CTGTCGGGCGAAAATTCACGCGTATGTCCATGTTCAGGGTGCCGAAAAAC
GGCTTCATTTTCTTCTTGCTCTTGGTTGCCGTCCTTTTTATTTTCTCCCC
CACCCCCTCTTCGCCCTCCCCATGTCGACATTCCTGTCTTGCGTCAGATG
TGCCCATTTTGCCCTCAACGCAGCACGTAAAACTTACGTTTATTCGTCCG
TGCCGCTTTGTCTCGTTTGTCTCGTTTCCTCTTTCTTGTGGGTTGTGCTG
CCCAAACGCCATGTGATTCCATACATACACCGCAAACGCGCACAGGACAA
GTTTATGCTGGTGTACGCGTCGAATCAGCCGGAGCAGTTCGACTGGGCGG
TAAACTACCGGATCGACGAGATGGTGCCCTTCGGCCTCCCCGGCCGCGAA
GAGCGGCTGCGCAATATGAACCTCTACATGAAGGGCTACCTCCTGGACCT
TCCCGGCAGGGCCAAGGTCATCACGGTGGACGGGGTGGAGGTGAGAAGTA
GGAAACCAAGCGTCACGCACGCACGCGCACGCGTTCAGCGGATGTGGACT
GATCCTGACTTCATGCTTCGTGTGATGTGTATTTATGTAAACATGTACTT
CGAAGTATTGTACGAGTTTGTAGTTTTCCGCGGGCATTATGTATATTGGC
GTTCGATTTTTTGACTTCATATATATGGAAAGGATTGTTTGGACATCATT
CTTGTATTATTGGAGACATCAGGAATTGCGTGTTGAGGAGGCGTGTTGAG
GAGACCTATCCAAAGACCTCAAATCTTCGTGGAGCCACTCCAAAGTGATC
ACTTGGCGCCTGCTACATGGGTAGATTGGCTGCCGCCGTTGCCTACTTTT
CAGCCCACGCCTGCCAGAAGGATGGCGCTCTACAATACTCGGATGAAGTC
CGATCGAGAATCACAGAGCGGGGAGGGTAGGACTGGGGGGGGGGGGGGCT
GTGAACGGTTCCGGTGAACAGAACCCACACAAGTGCGTTTGCCATCCTAT
CCTGTGTTGGAGCTCTCCTTTTCCTGTTTTCTCAGCGGATGTCGGAATTC
ACGCGCGCATGTAAAAAGCACCATCGGCGCGGCACACGCAGATTTCCGAT
TTTTACTCGCGACCCTCTTGTTGCTGCGGTCGTACATCCTACCAGCCGAG
AGATCGGCGTATTTGCTGCCAGAGGTCTGTCTCCGTGTGTGCGTACATAT
GTATGTGAATGTACTGCGTGAGCCTGCGCGCGATCGCAGCAACCGCGCTA
ACTAGTTGACCAATGAGATGCTGCCACCCCTAAATATGCATGTAAGCCGG
TAAAAATGGAGGGATTCTGATGAGAGGCGAGCACTCAGATTTCGATAGCG
CGCGCGCGCGCTGTGTCTCTCTGTGTGTTTTGTGCTTTTATGTTTTTGGC
CTTTGATGTTTCGGCATCCGCCGTGCGTGTTGTCGATTATCCGCTGCCCT
ATGTATGTACCCCTCGGTTCGTCTGTCCATCCGCCGTGCCCCACAGGACT
CTTACCTGCAGGAAGTGGCGGACCTGACGGAGGGCTTCTCGGGGCGAGAC
ATCGCCAAGCTTGCCATCGCGTGGCAGGCGGCGGCGTACGGCACGAGCGA
CTCCTCCTTCACGGCCGAGCTCACGACGGAAGTTTTGGATGTGCGTGCTA
CTATTTGCGTACTTCCAAAGTACATATGTATGTGTGTGTACATACCTACC
GTGTACGACACAAGATAACACAGCCCCTGGACCGATTTTCAAAGCTGGTT
TACTCCGCAACGAGTATGATCCTAATACCAAACGACGCGTGTGCGGACAG
CTCTCGATGAGGTCTTCCCAACGCCGCCCTTTTCGGGACTGATGACACTC
TCGCTGTTGCCTTTGTCCTAAAAATATGTAGCATATTATTCCCACTTGGT
CAACTATTTTCAGTTGGCAAGACGCCGACCGCGCGGATTGGCTGACCAGC
GACAGGATGGCTGCGTATCGATGGCCGGTCCTCTGTGGCTTTGTGGTTGT
GGGAGTAGGTGAAACAGACGGTGGAGACTATGGAGAGGGTCAGAACTCTG
CCACGTGGTCCCCCCGTGGAGTTTTCCGCGCGTCCGAAAACGTGATTTAT
ACATGCATAGATATGTACGTAGAGTAGCTACCGGGATTTCACGCACGATT
GGGTCTACCGCTTTCCTCTGTTTTCCCCTTGCCCCTCTTACCCCCGTGCA
AACCGCCGTGTACCTACCGTCGCTGCTCGATCCAGGCGCACCTGCAGCAG
AAGAGACAGAAGCAGGTGTGACTCGAGGGGGCGCAGACCAGCTCGGGGGG
GTTGAATATGCCCACCCCCCACACTGAGCGAATGCCCCCGCGGCTGATTC
GAAGGCTCACGCAGGACGCAGTGGAGGGCGTCGTAGGCGGGTCAGGGGAG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9260:2350..7200-

>mRNA_L-elsbetiae_contig9260.18273.1 ID=mRNA_L-elsbetiae_contig9260.18273.1|Name=mRNA_L-elsbetiae_contig9260.18273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig9260:2350..7200- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAAATGGTAAGACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCC
TGGCACGCCACTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGACATC
GCGCCCCTTGGGAGGGACACCGTGACGGAGATGCACAAGGTCTTCGACTG
GGCTCAGGACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACG
CCACTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGACATCGCGCCCC
TTGGGAGGGACACCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAG
GCGAGCCGCAAGGGCCTTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCC
TAAGGCGGCGCAACACGGAGACCATCAGCGAGGACCTCCTCAACGCCCTG
AACGCCTTCCTCTACCGCACGGGAGAGTCCACGGCGAGCCGCAAGGGCCT
TTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTAAGGCGGCGCAACACG
GAGACCATCAGCGAGGACCTCCTCAACGCCCTGAACGCCTTCCTCTACCG
CACGGGAGAGTCCACGGACAAGTTTATGCTGGTGTACGCGTCGAATCAGC
CGGAGCAGTTCGACTGGGCGGTAAACTACCGGATCGACGAGATGGTGCCC
TTCGGCCTCCCCGGCCGCGAAGAGCGGCTGCGCAATATGAACCTCTACAT
GAAGGGCTACCTCCTGGACCTTCCCGGCAGGGCCAAGGTCATCACGGTGG
ACGGGGTGGAGGACAAGTTTATGCTGGTGTACGCGTCGAATCAGCCGGAG
CAGTTCGACTGGGCGGTAAACTACCGGATCGACGAGATGGTGCCCTTCGG
CCTCCCCGGCCGCGAAGAGCGGCTGCGCAATATGAACCTCTACATGAAGG
GCTACCTCCTGGACCTTCCCGGCAGGGCCAAGGTCATCACGGTGGACGGG
GTGGAGGACTCTTACCTGCAGGAAGTGGCGGACCTGACGGAGGGCTTCTC
GGGGCGAGACATCGCCAAGCTTGCCATCGCGTGGCAGGCGGCGGCGTACG
GCACGAGCGACTCCTCCTTCACGGCCGAGCTCACGACGGAAGTTTTGGAT
GACTCTTACCTGCAGGAAGTGGCGGACCTGACGGAGGGCTTCTCGGGGCG
AGACATCGCCAAGCTTGCCATCGCGTGGCAGGCGGCGGCGTACGGCACGA
GCGACTCCTCCTTCACGGCCGAGCTCACGACGGAAGTTTTGGATGCGCAC
CTGCAGCAGAAGAGACAGAAGCAGGTGTGACTCGAGGGGGCGCAGACCAG
CTCGGGGGGGTTGAATATGCCCACCCCCCACACTGAGCGCACCTGCAGCA
GAAGAGACAGAAGCAGGTGTGACTCGAGGGGGCGCAGACCAGCTCGGGGG
GGTTGAATATGCCCACCCCCCACACTGA
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