mRNA_L-elsbetiae_contig926.18270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig926.18270.1
Unique NamemRNA_L-elsbetiae_contig926.18270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: D8LMQ3_ECTSI (Nitroreductase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ3_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 1.440e-152
Identity = 240/322 (74.53%), Postives = 270/322 (83.85%), Query Frame = 3
Query:    3 RVLRLRSNVFGKSSKNYGVNRPSESSPRSYQCRRSARLFSVNSSSPC---PQEANVQEEARLSRSSSSSS---LKAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGIDPVVP 950
            RV+R +  + G+  + +GV         S +C  SA +FSV SSSP     ++AN+QE+A LS +SSS S   LKAFRDVV SRTA+++FSDEE+D   LR+IMALTQSAPSSFNIQPWSVV+VRD AARERLST MLGGNAKKVLAAPVTAVFCADLEPSKRI+RMVEL+R+AGMPEA+ITK  LAVNLFSGEG+VGNAVRNAVT+IASPMQPAPEV SAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIP++V TGYP+PSK    G  G   RRWRYPPQEVVFDG+FGVGM G+DPVVP
Sbjct:    4 RVVRPQEALLGRCIRKHGV-------AESLRC--SAAMFSVRSSSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGVDPVVP 316          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A835Z3C4_9STRA (Putative nitroreductase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C4_9STRA)

HSP 1 Score: 225 bits (573), Expect = 5.720e-67
Identity = 114/242 (47.11%), Postives = 154/242 (63.64%), Query Frame = 3
Query:  234 RTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGIDPVVP*TL 959
            R A+  F  + +   I+ D++A+T   P+SFN QPW+ ++VRD   +E L+  M+G N  KV AAP+TAVF ADL+P++R+ RM+E  R+AG PE  + +L   + LF GEG    A+R  VT+  SP++P P V S EAWS+K+  LA QTY+L+ TAHGL TAPMEGFD RRV AALD+PDRYG+ + V TGY  P           S   WR+ P+E+VF   FG  +    P VP +L
Sbjct:    3 RHAAKRFLPDAVPEDIINDVLAMTIRTPTSFNAQPWACIIVRDEEQKEALAQAMVGPNIMKVRAAPLTAVFLADLQPTRRVPRMMEEERRAGTPEERVARLPAMIGLFGGEGAAAEALRRGVTAALSPLKPMPSVTSTEAWSYKHAGLAAQTYLLAATAHGLATAPMEGFDGRRVCAALDVPDRYGVAVAVATGYEDPQH-------APSAASWRFAPEEMVFLDRFGAPV----PDVPTSL 233          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A484DVA5_BRELC (Nitroreductase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVA5_BRELC)

HSP 1 Score: 211 bits (536), Expect = 5.000e-61
Identity = 108/244 (44.26%), Postives = 151/244 (61.89%), Query Frame = 3
Query:  210 AFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGIDP 941
            A +D +  R A   F    +    L++I+ LT  AP+SFN+QP++ +LVR    R++L+  M+GGNA+KV+ APV AVF ADLEP+KR+ R+ +L+  +G P   ++ +   V LFSGEGM+ + +R  +++  SP+QPAP   S EAWSFK T+ A  T++ +   HGL T PMEGFD  RVR ALDIPDRY +P+V+  GY  PS   K  ++       R  P E+ FDG FG     I P
Sbjct:   29 ALKDAIEERYACKAFLPCHVSDETLKEILKLTLRAPTSFNVQPYACILVRQEKDRKKLAEAMMGGNARKVIEAPVIAVFAADLEPTKRVPRLQKLAYDSGAPADFVSNMPHVVRLFSGEGMISSMLRKIISTAVSPLQPAPSDVSTEAWSFKQTSFAAATFLYAAQVHGLATCPMEGFDIIRVRNALDIPDRYSVPVVIALGYADPSAKPKKLSE-------RLDPTEMFFDGKFGDSCKKIFP 265          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: W4GD81_9STRA (Nitroreductase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD81_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.380e-58
Identity = 109/240 (45.42%), Postives = 143/240 (59.58%), Query Frame = 3
Query:  207 KAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGM 926
            +AFR +   R +   +  + I   IL+DIM  TQ APS FN+QP++ VLV+DAA R  LS  MLG N +KV  AP+ AVF +DLEPSKR+  + E+ R AG   ADI +L L +  F GEG +  A+RN +++  +P QP P      AWS+K+T LAV  YIL+  +HG+    MEGFD   VR ALDIPDRY +P+VV +GYP          D S     R  P +V F G FG  +
Sbjct:    4 QAFRSLARQRRSVYKYQSKAIPNDILKDIMLTTQRAPSGFNLQPYACVLVQDAADRNTLSAAMLGDNVRKVKEAPLIAVFASDLEPSKRVPAIQEMMRSAGQSTADIQQLPLKLRFFGGEGHLAGAIRNGLSTALTPFQPVPTYVPTIAWSYKSTMLAVSQYILAAESHGIGCCVMEGFDETWVRHALDIPDRYSVPVVVASGYPIE-------VDPSPALSPRLAPSQVFFGGKFGAAV 236          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A4D9DF56_9STRA (Nitroreductase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF56_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.080e-58
Identity = 111/276 (40.22%), Postives = 168/276 (60.87%), Query Frame = 3
Query:  117 FSVNSSSPCPQEANVQEEARLSRSSSSSSLKAFRDVVISRTASLTF-SDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQA-GMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIP-DRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGI 935
            FS ++ +   +E N+  E+ L R+     + AF+  V++R ++  F +  EI    L  I+ALT   P+SFN+QP++V +V+    +++L+  MLG N+ +VL APVTAVF ADL+P + + R+  L R+  G+PEA +  L  +V   +G+G + +A ++  T+  SP+QP P V + EAWS+KNTA+A   Y+LSC+ HGLDT PMEGFD RR+   L IP  RY IP+VV TG+  P        +  + +  R+PP+ VVF   +G    GI
Sbjct:   48 FSTSAGAQHSEEENIDHESSLGRAG----ISAFKRAVLARHSTKAFDAKREIADETLAAILALTLRCPTSFNVQPYTVTIVQSEDMKQKLAACMLGPNSARVLQAPVTAVFAADLDPVQLVPRVQSLERRKRGLPEAYLATLPFSVAFLAGKGHLAHAFKDLFTTAMSPLQPMPSVSTLEAWSYKNTAIAASWYMLSCSVHGLDTCPMEGFDGRRIMHELHIPASRYAIPLVVSTGFAMPLPSSSPERNEEAKKSPRFPPEAVVFKDQYGHAYKGI 319          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A485L4K4_9STRA (Aste57867_15817 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4K4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.150e-57
Identity = 107/241 (44.40%), Postives = 145/241 (60.17%), Query Frame = 3
Query:  207 KAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMA 929
            +AFR +   R +   +    I   IL+DI+  TQ APS FN+QP++ ++V+D A RE LS TMLG N +KV  AP+ AVF ADLEPSKR+  + E+   AG   ADI +L L +  F GEG +  A+R+ +++  +P Q  P      AWS+K+T +AV  Y+L+  +HGL +  MEGFD  RVR ALDIPDRY +P+VV +GYP P  D    +        R  P +V FDG FG   A
Sbjct:    3 QAFRTLARQRRSIRGYEKTAIPKDILQDILLTTQRAPSGFNLQPYACIVVQDTAQRELLSATMLGDNIRKVKEAPLVAVFAADLEPSKRVPAIQEMMTAAGESVADIHQLPLKLRFFGGEGHLAGAIRSGISAAFTPFQAVPTYVPTIAWSYKSTMMAVSQYLLAAESHGLGSCVMEGFDEVRVRHALDIPDRYSVPVVVTSGYPKPVTDVPPPSP-------RLDPTQVFFDGKFGASAA 236          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A2D4CFG6_PYTIN (Nitroreductase family, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFG6_PYTIN)

HSP 1 Score: 206 bits (525), Expect = 7.710e-57
Identity = 106/243 (43.62%), Postives = 149/243 (61.32%), Query Frame = 3
Query:  207 KAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGI 935
            +A R ++ SRTA  +F+ + +   +L D++ LTQ APS FN+QP++ V+VR+ A RERL+  ML  N +KV  APV AVF ADLEPS+R+ R+ ++    G     +  L     LFSGEG V   +R  ++++ SP++  P      AWSFK TA A   ++ + +A+GL T PMEGFD  RV+ ALDIPDRY IP+VVC GYP+ +      + G+ +   R  P EV FDG FG   A +
Sbjct:   20 EALRKLIASRTACRSFASDPVPDDVLADVLRLTQRAPSGFNMQPYACVVVREQADRERLADAMLASNGRKVREAPVVAVFAADLEPSRRVPRIQKMMHDNGASAEAVNNLPHYTRLFSGEGEVAGGIRRLISTVVSPIRAVPSHVPTIAWSFKQTAFAASAFLHAASAYGLATCPMEGFDETRVKHALDIPDRYAIPVVVCCGYPNAATS----SSGAPSASPRLHPTEVFFDGKFGSSTASL 258          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: W2YM79_PHYPR (Nitroreductase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=W2YM79_PHYPR)

HSP 1 Score: 199 bits (506), Expect = 1.160e-56
Identity = 107/241 (44.40%), Postives = 143/241 (59.34%), Query Frame = 3
Query:  195 SSSLKAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFG 917
            SS+ K     +  R A   F    +    L++I+ LTQ AP+ FN+QP++ VLVR+   RE+L+  M+  N +KV  APV AVF ADLEPSKR+ R+  L    G P   +  +   V LFSGEG+V + +R A+ +  SP+ PAP   S EAW+FK TA A  T++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+V+  G+ +P  D K     +     R  P E+ FDG FG
Sbjct:   20 SSAQKRMGAAIEERYACKAFLPTPVPNETLKEILRLTQRAPTGFNVQPYACVLVREQKDREKLAEAMMDSNIRKVKEAPVVAVFAADLEPSKRVPRLQHLMHDNGAPADFVANMPHVVRLFSGEGVVASTLRAAIATAVSPLMPAPSNVSTEAWAFKQTAFAAATFLYAAQTHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHANP--DAKPEKPSA-----RLDPTEIFFDGKFG 253          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: H3GH55_PHYRM (Nitroreductase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GH55_PHYRM)

HSP 1 Score: 199 bits (507), Expect = 1.420e-56
Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 3
Query:  261 EEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPS-KDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGI 935
            E + L ++  ++ L Q AP+ FN QP++ VLVR+   RE+L+  M+  NA+KV  APV AVF AD EPSKR+ R+ +L+   G P   +  +   V LFSGEG+V + +R A+ +  SP+QPAP   S EAW+FK T  A  T++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+V+  G+P+P+ K  K           R  P EV FDG FG    GI
Sbjct:   60 EILKLTLVLTLLLLAQRAPTGFNTQPYACVLVREQKDREKLAEAMMDSNARKVTEAPVVAVFAADCEPSKRVLRLQKLAHDNGAPADFVGNMPHVVRLFSGEGVVASGLRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATFLYAAQVHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHPNPAAKPEKPSV--------RLDPTEVFFDGKFGQSSEGI 277          
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Match: A0A3R7NF45_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NF45_9STRA)

HSP 1 Score: 198 bits (504), Expect = 4.400e-56
Identity = 112/267 (41.95%), Postives = 152/267 (56.93%), Query Frame = 3
Query:  135 SPCPQEANVQEEARLSRSSSSSSLKAFRDVVISRTASLTFSDEEIDLAILRDIMALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAVFCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRNAVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQEVVFDGSFGVGMAGI 935
            SPC +   ++  A  +R SSSS+ K     +  R A   F  + +    L++I+ LT  AP+ FN QP++ V+VR  A RE+L+  M+  N +KV  APV  VF AD EP+KR+ R+ +L+   G     +  L   V LFSGEG+  + +R A+ +  SP+QPAP   S EAW+FK T  A  T + +   HG+ T PMEGFD  RVR ALDIPDRYGIP+V+  GYP+P+          +    R  P EV FDG FG    GI
Sbjct:    6 SPCTRF--LRRSALQARWSSSSAQKKLGAAIQDRYACKAFLPDPVPEQTLQEILKLTLRAPTGFNTQPYACVVVRKQADREKLAEAMMASNVRKVKEAPVVVVFAADCEPTKRVPRLQKLAADNGASTDLVNNLPHVVRLFSGEGVAASGIRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATLLYAAQEHGVATCPMEGFDQIRVRNALDIPDRYGIPVVIALGYPNPAT-------APTKPSVRLQPTEVFFDGKFGQSSEGI 263          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig926.18270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ3_ECTSI1.440e-15274.53Nitroreductase domain-containing protein n=2 Tax=E... [more]
A0A835Z3C4_9STRA5.720e-6747.11Putative nitroreductase family n=1 Tax=Tribonema m... [more]
A0A484DVA5_BRELC5.000e-6144.26Nitroreductase domain-containing protein n=1 Tax=B... [more]
W4GD81_9STRA1.380e-5845.42Nitroreductase domain-containing protein n=3 Tax=A... [more]
A0A4D9DF56_9STRA8.080e-5840.22Nitroreductase domain-containing protein n=2 Tax=M... [more]
A0A485L4K4_9STRA2.150e-5744.40Aste57867_15817 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4CFG6_PYTIN7.710e-5743.62Nitroreductase family, putative n=2 Tax=Pythium in... [more]
W2YM79_PHYPR1.160e-5644.40Nitroreductase domain-containing protein n=5 Tax=P... [more]
H3GH55_PHYRM1.420e-5646.02Nitroreductase domain-containing protein n=2 Tax=P... [more]
A0A3R7NF45_9STRA4.400e-5641.95Nitroreductase domain-containing protein n=3 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig926contigL-elsbetiae_contig926:5253..9746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue9.3e-105
Seed eggNOG ortholog2880.D8LMQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1571
Cds size660
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.4777236-UTR-L-elsbetiae_contig926:5252..58701622816997.4777236-UTR-L-elsbetiae_contig926:5252..5870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 5253..5870 -
1691683970.9711032-UTR-L-elsbetiae_contig926:5252..58701691683970.9711032-UTR-L-elsbetiae_contig926:5252..5870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 5253..5870 -
1622816997.5552278-UTR-L-elsbetiae_contig926:8922..90501622816997.5552278-UTR-L-elsbetiae_contig926:8922..9050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 8923..9050 -
1691683971.0399306-UTR-L-elsbetiae_contig926:8922..90501691683971.0399306-UTR-L-elsbetiae_contig926:8922..9050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 8923..9050 -
1622816997.5653694-UTR-L-elsbetiae_contig926:9581..97461622816997.5653694-UTR-L-elsbetiae_contig926:9581..9746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 9582..9746 -
1691683971.0538452-UTR-L-elsbetiae_contig926:9581..97461691683971.0538452-UTR-L-elsbetiae_contig926:9581..9746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig926 9582..9746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.4893353-CDS-L-elsbetiae_contig926:5870..60691622816997.4893353-CDS-L-elsbetiae_contig926:5870..6069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 5871..6069 -
1691683970.9835422-CDS-L-elsbetiae_contig926:5870..60691691683970.9835422-CDS-L-elsbetiae_contig926:5870..6069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 5871..6069 -
1622816997.5001676-CDS-L-elsbetiae_contig926:6292..64111622816997.5001676-CDS-L-elsbetiae_contig926:6292..6411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 6293..6411 -
1691683970.9926426-CDS-L-elsbetiae_contig926:6292..64111691683970.9926426-CDS-L-elsbetiae_contig926:6292..6411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 6293..6411 -
1622816997.5117376-CDS-L-elsbetiae_contig926:7101..72031622816997.5117376-CDS-L-elsbetiae_contig926:7101..7203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 7102..7203 -
1691683971.0020444-CDS-L-elsbetiae_contig926:7101..72031691683971.0020444-CDS-L-elsbetiae_contig926:7101..7203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 7102..7203 -
1622816997.5232527-CDS-L-elsbetiae_contig926:7624..76981622816997.5232527-CDS-L-elsbetiae_contig926:7624..7698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 7625..7698 -
1691683971.0117176-CDS-L-elsbetiae_contig926:7624..76981691683971.0117176-CDS-L-elsbetiae_contig926:7624..7698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 7625..7698 -
1622816997.5338724-CDS-L-elsbetiae_contig926:8218..83671622816997.5338724-CDS-L-elsbetiae_contig926:8218..8367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 8219..8367 -
1691683971.021165-CDS-L-elsbetiae_contig926:8218..83671691683971.021165-CDS-L-elsbetiae_contig926:8218..8367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 8219..8367 -
1622816997.5455325-CDS-L-elsbetiae_contig926:8905..89221622816997.5455325-CDS-L-elsbetiae_contig926:8905..8922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 8906..8922 -
1691683971.03048-CDS-L-elsbetiae_contig926:8905..89221691683971.03048-CDS-L-elsbetiae_contig926:8905..8922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig926 8906..8922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig926.18270.1prot_L-elsbetiae_contig926.18270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig926 5871..8922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig926.18270.1

>prot_L-elsbetiae_contig926.18270.1 ID=prot_L-elsbetiae_contig926.18270.1|Name=mRNA_L-elsbetiae_contig926.18270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MALTQSAPSSFNIQPWSVVLVRDAAARERLSTTMLGGNAKKVLAAPVTAV
FCADLEPSKRIHRMVELSRQAGMPEADITKLSLAVNLFSGEGMVGNAVRN
AVTSIASPMQPAPEVGSAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGF
DARRVRAALDIPDRYGIPMVVCTGYPSPSKDGKDGTDGSSTRRWRYPPQE
VVFDGSFGVGMAGIDPVVP*
back to top

mRNA from alignment at L-elsbetiae_contig926:5253..9746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig926.18270.1 ID=mRNA_L-elsbetiae_contig926.18270.1|Name=mRNA_L-elsbetiae_contig926.18270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4494bp|location=Sequence derived from alignment at L-elsbetiae_contig926:5253..9746- (Laminarionema elsbetiae ELsaHSoW15)
CACGGGTATTGCGGCTACGATCCAATGTATTCGGTAAAAGTAGCAAAAAT TACGGTGTAAACCGCCCATCGGAGTCATCGCCGCGATCGTACCAATGTCG CCGTTCTGCGAGGTTATTCTCTGTAAACTCGTCTTCTCCGTGCCCACAAG AGGCCAATGTCCAAGGTCAGTGGGGTTCTCATCACGTATCTGCATCAACG TATACGTGCTGTGTGTATGCGATAAAGTGTAGACCGTAGGAGTCTGTGGT GTCGCCATCGTGCCCTCCGCACGAATGTAGTTTGTCGACATGCAGTGTCA TCGTTTGGGCCACAAGGCTGATCTACGAACATACATAGGTCATCCTCGTT GGCAGAGCTAGAGGACCGTATCTACCATTCTCTCAGCGCACGATCTCTGC TGAATAGATGTACATATGAAGCGAAGCCCTTTCGTGTTTTTTTACGATGT TCTGTTCTTCCAACGAGAGGCCAGCTACAAATGCCGACGCTGTTTGTCCG GCCCCTTTTTCAAATCATTTCGGTCGCCAACTGGACGCCTACCACTGCTA CATGCTCGAATTCCCCACGAGCTCCCAGCGCTGCTTGATTTCGGCGTAAA AGTTGTGTGCATTTGACATCCGCTGGTTGGTTTCCCACACCCTCTGACGT TTTGTCTTTATCGCCCCCAACGCATCCACCTCCATGTGCTGCGCAGAAGA AGCCCGCCTGTCTCGCTCCTCGTCGTCTTCGTCGCTCAAGGCTTTCCGAG ATGTCGTGATCTCGCGCACGGCTTCTTTAACCTTCAGTGATGAGGAGATC GACCTCGCCATCCTTCGTGATATCATGGCGCTCACGCAAAGGTGAGCAAA TTGCGTCTTTCTGTCCATGGATAGCCCGGGTGAGAAATGGGCAACTACAG CATCTCTTCGAAGTATTGCAAATACTGGCATGCATAAATTAAAGCTGGAA TATAGCAAGGGCCGACTAATTGCCACCGTCTGGTGGAAGGTGCGGCAGGT GCATGCGAGTTTATCCATGCTTTCGTGCACTGTTTAGCGAAAACCAGCAT GCACGGGTCACCATTTCAGAGTAGGCCGTTTTTACCTCAGACAGAAAAGC TTGAGGGCCACAGCCATGGCTGCATGAAAATACCCCGACTGCTCTTACCT CACAGTTGTCCACGTGCAACGGGCACGTGTTCGCCCATGCTTTGCAATAC TAGTGCGAATACCAATTTTGTGCGCGTGTGCGCGCGTGTGTGTGCACGCG CGCGCGTGCATGCATGCATGCATGCTAGCAAACCTTGTCTTGGCGAATTT GACCACTCCTTTTTCCGTAACGTTTTTTCCTGGGCGCTCTAAACTCGGGG AATCCCCTCCCCCATGTTTCATTTCGCAGTGCCCCGTCGTCATTCAACAT CCAACCCTGGAGCGTGGTTTTGGTGCGAGATGCTGCCGCGAGAGAGCGCT TGTCGACTACGATGCTGGGAGGGAACGCCAAGAAAGTGCTGGCGGCCCCC GTGACGGCCGTGTTTTGCGCCGACTTGGGTGAGGGTTTTTGCACCGGTGT AAATTAGCAGTGCTTAGTTCGGCTATGTATGCATTCTGCCTCTCTAAGTT CGCCTGGGCCTTCGTCCCAGCAAAAAATTTCTCATGCGGTTCTGTGGTGT TCATCAGCTGGAGTCCCTTGTTTCACCTTATTGGTGTTGTTGGTACCCCC GCACCTGGAGCATTCATTCTGCCTACGCGAAAGGAACCCATGCGGGATGT GAGCTGACGCGATATCAGCCGGTTGTTCACAGCACTGCCTTGATTTCTGC CTGCCAAGACGCCAAATAAACCACACCGACTCGGAAATGAACTCCCTGTT ATTTCGAACTCCATTTTGTGCCCAGGGGTCTGGACAGATACGCAGTTTGA TTAAAGGCATGCGTCACCCTCGTTTGCCACGCTGTCGGTCGTTCTTTTGC ACACATGCACGCTCTTGCGTTTACTAGCCTTGTCTACACACGGCCTCATA CCTCCACGCCGATCCAACTGACTGTACCCGTAATCGTTCGCAAACCAGAG CCTTCGAAGCGTATCCACCGAATGGTGGAGTTAAGCCGGCAGGCAGGCAT GCCAGAGGCGGACATAACCAAGGTACGATGTATCTCTGCGGCGAATCGTT GATAAATATTTTCGTCTGTTGTGCGCAATGATAAAGTACGAGATGAGGGC TTGTGCAGATAATTGCGCGAATCAATGGGTGACAACTAGACACGACCCAA TCTGAAAGTTGGCCACTGCTCTGCACAGGCTTTTTGCAGCTCGCTCCAGA ATTATTCGCCAGCAACCATCTTCAAAATACGCTTCAAAATTCGATCCAAC GTTATCTTGTCCACCATTCAAGATAAATTTATCTGCGCAGCCAACGTCAT GGAGGCAACGAAGCGAAACATCATAATTACCTTCTTTATAAATTTGGTGA AAACATCCAATCAGCGAGAACACCTCTCTCGCGCTTCGCCACGATTTTTG GTTCCGCGATGCCTTCGGTGTTGTTCGTGCTGTGTTTTCCCAGCTGTCGT TGGCGGTGAATCTTTTCAGCGGGGAGGGCATGGTCGGCAACGCTGTACGG AACGCGGTCACCAGTATCGCCTCTCCCATGCAGCCAGCGCCTGAGGTGAG GAGAAGCTCGTTCCTTGCAATGCGTCCATGGCTTCGACGATACATATCCT ATTTTTTCTTGCATTTTGACTTATTTAGAAATATCAATCAAAGGTGAGTG AACGCCTTAAACCATTGAAGTAGTCCCCCAATGAAGCCGAAATGGGATTT CCACCATACACGCCCTTCTTCGGTGCCTGAGGCTGAAGTCCTCGTTGTAG TCTCGTGTATGACACTTTTAGGGCGAGGTCTCAGGAAGGGAACATGCCCT TTACAGTTGCAGTAGCTGATACTCAGTTTAGGGGTGCATTTCCTGAATGC TGCTTGCTCGCTCCGGTTTGGGGGGTGTTCTCCGTCTATCGCGATAGACG GTGGCGGCATTGACGCTAATTAATGAACATGGTCGACAGGAAACCGAACC TTCCGGCGCGCTCTGTTTGTTGTAGCACCTGTTCAGTCTTGTTTCGTACG GGTGACTTCGAACATGGTCAGCATCAGATGTGCTCAGATGATCTGGGTGC GAGACAACGTGCTATTCGTGCTTCACTTGGGTTGCGGTGTGCGGAAGGGA GCACGGCTCTTCGAAAACACTACTGCTGTGTTTGAGATACATCGGTACAC TGACTGTTTTCCCCTCTTTCGTTCGGTGGAACCTTGAACAAATGGCGATT TCGCGAACGGCAACGCGACTCATTTTGGCGGGCAGGTGGGGTCGGCGGAG GCGTGGTCCTTCAAGAACACCGCCCTCGCCGTCCAGACGTATATCCTTTC CTGCACGGCACACGGGCTGGACACAGCACCCATGGAAGGCTTCGACGCCA GAAGGTAGATAACTCTGCCCCCTCTTGTTTCTTCGGGGGTTACGTACATA CATACATACATACATACATATGTACATCCTCCCGCAGATAGATATGAAAG GCCGAAAGGCCTGGCACCGTTCACAAAAAGGAAGACAATATTAGGACACC GACCAAAAGGAACCCCACACAGGCGTATCTCAAGTGACGAGTCACCCTTC CACCCCTGTCTGTCTACCTTTCCGCAGGGTGAGGGCTGCGCTTGACATCC CCGACCGATACGGCATCCCCATGGTAGTTTGCACGGGCTACCCTTCGCCG TCTAAGGACGGAAAGGACGGGACCGATGGGAGTTCGACGAGGCGATGGCG GTATCCACCGCAGGAAGTGGTATTTGACGGCTCCTTCGGGGTCGGAATGG CAGGGATAGACCCGGTAGTACCATAGACACTCCTTAGTGAAGGGGAACCT TGGTGCGATTCATATATTTGTGGTGTCGGTGCTCCTTAATCTTACTCTTT GTCCCCATCGTTGGTTCGAGCTGCTGCGGGCCGTTGAGTGGGACTGGGTG TAAACGGCCGGTGGCTGCTGTGCACACGGTTTGTTTGTCGAGTTTCAGGA TCAGTGGTGGGTCTAAGCGGCCAAGTTCCCACAGATGTATTCAGTCCTAC TATGTAGCGTAATCTACCGATGGCTGCTTCCGTAGCCCTGACGGGAGAGG CTCCGCTCAGAATTACTTTCGTAGCAGGAAATCGCATCCGCCCCTTCACC GATTCTAGTAACACCCAAGTAGTCATGGCCACGGCAACACGACAGCCTTC ACCTGCATCAAGTAGAAGTACGGCAGTTGAGATCATGCCAACATTTGTAG GAAACGTTCGGTACTGCCCCCGCGAAATCATTCCCATCCCGGGTTACTCG GTTAGGATTCACGGACCCTCTGCTTCTGTCTGCTAGAAGTTGCATGAAAA TTGCCGTCGTCTTGCACATAAGTCTAGTGGACATCCTTGGAAGTGCCGCG GTGTCTTATCAGAGCAGCAAGTCCAATGTTAAAACCATCAGAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig926:5253..9746-

>mRNA_L-elsbetiae_contig926.18270.1 ID=mRNA_L-elsbetiae_contig926.18270.1|Name=mRNA_L-elsbetiae_contig926.18270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig926:5253..9746- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCACGCAAAGATGGCGCTCACGCAAAGTGCCCCGTCGTCATTC
AACATCCAACCCTGGAGCGTGGTTTTGGTGCGAGATGCTGCCGCGAGAGA
GCGCTTGTCGACTACGATGCTGGGAGGGAACGCCAAGAAAGTGCTGGCGG
CCCCCGTGACGGCCGTGTTTTGCGCCGACTTGGTGCCCCGTCGTCATTCA
ACATCCAACCCTGGAGCGTGGTTTTGGTGCGAGATGCTGCCGCGAGAGAG
CGCTTGTCGACTACGATGCTGGGAGGGAACGCCAAGAAAGTGCTGGCGGC
CCCCGTGACGGCCGTGTTTTGCGCCGACTTGGAGCCTTCGAAGCGTATCC
ACCGAATGGTGGAGTTAAGCCGGCAGGCAGGCATGCCAGAGGCGGACATA
ACCAAGAGCCTTCGAAGCGTATCCACCGAATGGTGGAGTTAAGCCGGCAG
GCAGGCATGCCAGAGGCGGACATAACCAAGCTGTCGTTGGCGGTGAATCT
TTTCAGCGGGGAGGGCATGGTCGGCAACGCTGTACGGAACGCGGTCACCA
GTATCGCCTCTCCCATGCAGCCAGCGCCTGAGCTGTCGTTGGCGGTGAAT
CTTTTCAGCGGGGAGGGCATGGTCGGCAACGCTGTACGGAACGCGGTCAC
CAGTATCGCCTCTCCCATGCAGCCAGCGCCTGAGGTGGGGTCGGCGGAGG
CGTGGTCCTTCAAGAACACCGCCCTCGCCGTCCAGACGTATATCCTTTCC
TGCACGGCACACGGGCTGGACACAGCACCCATGGAAGGCTTCGACGCCAG
AAGGTGGGGTCGGCGGAGGCGTGGTCCTTCAAGAACACCGCCCTCGCCGT
CCAGACGTATATCCTTTCCTGCACGGCACACGGGCTGGACACAGCACCCA
TGGAAGGCTTCGACGCCAGAAGGGTGAGGGCTGCGCTTGACATCCCCGAC
CGATACGGCATCCCCATGGTAGTTTGCACGGGCTACCCTTCGCCGTCTAA
GGACGGAAAGGACGGGACCGATGGGAGTTCGACGAGGCGATGGCGGTATC
CACCGCAGGAAGTGGTATTTGACGGCTCCTTCGGGGTCGGAATGGCAGGG
ATAGACCCGGTAGTACCATAGGGTGAGGGCTGCGCTTGACATCCCCGACC
GATACGGCATCCCCATGGTAGTTTGCACGGGCTACCCTTCGCCGTCTAAG
GACGGAAAGGACGGGACCGATGGGAGTTCGACGAGGCGATGGCGGTATCC
ACCGCAGGAAGTGGTATTTGACGGCTCCTTCGGGGTCGGAATGGCAGGGA
TAGACCCGGTAGTACCATAG
back to top