mRNA_L-elsbetiae_contig9257.18268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9257.18268.1
Unique NamemRNA_L-elsbetiae_contig9257.18268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9257.18268.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.180e-39
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = 1 
Query: 1102 VKRLLDRGSSGPDAFQLLLRHLADHFDSGDGQESFRRLQTFGVCDGTPFADYLRSFRLLVSAVTGTERVLAPSVAAMVLGLVRHSVMKQFPTLYPMLYPSELATIRTPFVSIAAMWESFS 1461
            VKR LD G++GP+AF LLLR L++ FD GD QESF RLQ FGV +GT FADYLR+FRLLVS+VTG+ERVLAPSV+ MVL +VR+SV KQFP+L PMLYP +LAT  TPF SI AMW++F+
Sbjct:  119 VKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVS-MVLEIVRNSVSKQFPSLAPMLYPGDLATAVTPFDSIDAMWQAFA 237
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BLAST of mRNA_L-elsbetiae_contig9257.18268.1 vs. uniprot
Match: A0A6H5JZJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.660e-34
Identity = 79/121 (65.29%), Postives = 91/121 (75.21%), Query Frame = 1 
Query: 1102 VKRLLDRGSSGPDAFQLLLRHLADHFDSGDGQESFRRLQTFGVCDGTPFADYLRSFRLLVSAVTGTERVLAPSVAAMVLGLVRHSVMKQFPTLYPMLYPSELATIRTPFVSIAA-MWESFS 1461
            VKR LD  + GPDAFQLLLRHLA+HFD GD QESF RLQ  G  DG PFADYLR+FR  VS+VTG+ER L  SV+ MVL +VR+SV KQFP+L P+ YP  LAT  TPF SIA  M E+F+
Sbjct:  118 VKRSLDGEAPGPDAFQLLLRHLAEHFDVGDRQESFLRLQQLGAADGIPFADYLRAFRFFVSSVTGSERTLVRSVS-MVLEIVRNSVDKQFPSLAPLWYPGVLATAVTPFKSIAVIMCEAFA 237
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BLAST of mRNA_L-elsbetiae_contig9257.18268.1 vs. uniprot
Match: A0A6H5JE42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE42_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.300e-32
Identity = 75/112 (66.96%), Postives = 89/112 (79.46%), Query Frame = 1 
Query: 1066 LRKPVARRPVTN---VKRLLDRGSSGPDAFQLLLRHLADHFDSGDGQESFRRLQTFGVCDGTPFADYLRSFRLLVSAVTGTERVLAPSVAAMVLGLVRHSVMKQFPTLYPML 1392
            +RK  AR+  ++   VKR LD G+ GPDAFQLLLRHLA+ FD GD QES  RLQ FGV DGTPFADYLR+FRLLVS+VT +ER LAPSV+ MVL +VR+SV KQFP+L P+L
Sbjct:  103 IRKHGARKGPSSRQQVKRSLDGGAPGPDAFQLLLRHLAEQFDVGDRQESVLRLQQFGVADGTPFADYLRAFRLLVSSVTDSERTLAPSVS-MVLEIVRNSVDKQFPSLSPLL 213
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BLAST of mRNA_L-elsbetiae_contig9257.18268.1 vs. uniprot
Match: A0A6H5K3M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-8
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1 
Query: 1102 VKRLLDRGSSGPDAFQLLLRHLADHFDSGDGQESFRRLQTFGVCDGTPFAD---YLRSFRL 1275
            VKR LD G++GP+AF LLLR L + FD GD QESF RLQ FGV +GT F     YL +FRL
Sbjct:  183 VKRRLDDGATGPEAFTLLLRLLLEQFDVGDRQESFLRLQQFGVSNGTLFVYFKYYLWAFRL 243
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9257.18268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE1.180e-3969.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZJ8_9PHAE1.660e-3465.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE42_9PHAE1.300e-3266.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M2_9PHAE1.030e-860.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9257contigL-elsbetiae_contig9257:1163..3361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1462
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9257.18268.1prot_L-elsbetiae_contig9257.18268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9257 1453..3044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.365783-UTR-L-elsbetiae_contig9257:1162..14521622816997.365783-UTR-L-elsbetiae_contig9257:1162..1452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9257 1163..1452 -
1691683970.9247563-UTR-L-elsbetiae_contig9257:1162..14521691683970.9247563-UTR-L-elsbetiae_contig9257:1162..1452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9257 1163..1452 -
1622816997.404375-UTR-L-elsbetiae_contig9257:3044..33611622816997.404375-UTR-L-elsbetiae_contig9257:3044..3361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9257 3045..3361 -
1691683970.9515584-UTR-L-elsbetiae_contig9257:3044..33611691683970.9515584-UTR-L-elsbetiae_contig9257:3044..3361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9257 3045..3361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.3775823-CDS-L-elsbetiae_contig9257:1452..15231622816997.3775823-CDS-L-elsbetiae_contig9257:1452..1523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 1453..1523 -
1691683970.9339824-CDS-L-elsbetiae_contig9257:1452..15231691683970.9339824-CDS-L-elsbetiae_contig9257:1452..1523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 1453..1523 -
1622816997.3885908-CDS-L-elsbetiae_contig9257:2260..30441622816997.3885908-CDS-L-elsbetiae_contig9257:2260..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 2261..3044 -
1691683970.9427946-CDS-L-elsbetiae_contig9257:2260..30441691683970.9427946-CDS-L-elsbetiae_contig9257:2260..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9257 2261..3044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9257.18268.1

>prot_L-elsbetiae_contig9257.18268.1 ID=prot_L-elsbetiae_contig9257.18268.1|Name=mRNA_L-elsbetiae_contig9257.18268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
MLLREAKLACDETAERERWASQLDAFAQPSSPRLDPISATAPPASSTAAT
SPSAAATAESSPPVRAAPATSAPPPASTTVPATVLAPVSMADFPALAPDP
VSAPSWSTVAAGSAATHPRAATLFVHGDKRWADSSIARFAERHPNGLRHV
DSLTITQLALRLLLTIGQDNSGITLHQLANVSHRPLTPATESHLQDLLAA
LRAAAANAPAAAPWMRDRPGVWSGSWAEPSSSSLPRGRSAAGVGGGRLDA
PETSRSASRDKRKTPVGPRFFWSGCFSATAAPSR*
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mRNA from alignment at L-elsbetiae_contig9257:1163..3361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9257.18268.1 ID=mRNA_L-elsbetiae_contig9257.18268.1|Name=mRNA_L-elsbetiae_contig9257.18268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2199bp|location=Sequence derived from alignment at L-elsbetiae_contig9257:1163..3361- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCCTCCTGCCGTACGCCCAGCAGCTTGCAATCTGCTCGCCGGCCGCC
GCGGCGGAGGCTGTGCTCGTCGCCGCCCGCACCATCGAGCAAGATCGACA
GCAGCAGGCGCGCCGACTTCGCGAGGACGAGGAGCAACGGCTCGCCGCGC
ACCGTGCCGGCACTCTGGCTCGGGAGGCCCGCCTCCGTGTTCTTGTCCAG
GAGCAAGCCGACATCATAGCGGCCAAAGGCCGGCTTGCCGAGCAACTTCG
GGGATTGCAAGACGAGCAGAGCGCGCTGGACGCGAAGCTGGGAACGACGA
CTTCGGCGCAGGACATCATGCTTCTGAGAGAGGCGAAGCTGGCCTGCGAC
GAGACTGCCGAGCGCGAGCGCTGGGCCAGTCAGCTGGATGCCTTCGCGCA
ACCTTCGTCTCCACGCCTAGACCCGATCTCGGCGACGGCGCCCCCGGCTT
CTTCGACGGCCGCAACATCTCCCTCGGCGGCAGCAACAGCGGAATCTTCC
CCCCCTGTCCGAGCTGCCCCTGCGACCTCCGCGCCGCCTCCTGCTTCGAC
CACAGTGCCCGCCACTGTTTTGGCTCCTGTCTCGATGGCTGACTTTCCTG
CTCTCGCGCCGGACCCGGTTTCGGCTCCTTCATGGTCTACCGTTGCCGCT
GGCTCAGCGGCGACACACCCCCGGGCAGCGACCCTATTCGTCCACGGTGA
TAAGCGTTGGGCAGACTCGAGCATCGCGCGGTTTGCCGAGCGCCACCCGA
ACGGCCTTCGACACGTTGACAGCCTCACCATCACCCAGCTCGCGCTGCGT
CTGCTTCTCACCATTGGCCAGGATAACTCCGGCATCACGTTGCACCAGCT
AGCCAACGTCTCGCACCGTCCCCTGACGCCAGCGACAGAGAGCCACCTCC
AAGATCTTCTTGCCGCGCTCCGAGCGGCTGCGGCGAACGCCCCTGCGGCG
GCTCCGTGGATGCGGGACAGGCCGGGCGTGTGGTCTGGGTCTTGGGCGGA
GCCTTCGTCTTCGTCGCTGCCTCGTGGACGGAGTGCAGCGGGTGTGGGTG
GTGGCCGGCTGGACGCTCCGGAAACCAGTCGCTCGGCGTCCCGTGACAAA
CGTGAGCGTTCACAGAGCCCCCGGCGTTATTGGCTCACCCTCCGAACCGG
TCCGTGCCAAAAAGCCTGATGGCAAGGCTACCCCTAAGATTACGTCGAGG
CAAGTTTTTTATTTGCTCGATACTGCTCCGCATTGTCCGTTGCCCGTTTT
GCCGCATGAATATGCCTCTTGGCCCTTGTATTCTCATCCATGCCCGCCTG
TAGTTGCACGCCCCGACCCCACTTTGCCCGCTCCTTTGAGTTCATCGCCC
GCGCTTGCTGCCACCTTAGCCGCGGCTCAATCTGTGTCCGCTAGTTGTTA
CGCTGATCCCGATGCTTTTTTCAACGACCCCATACCACCGCCTAGAAATG
CCCTGGTTCTCCCAGCGCCTTCCACCGATGCCATTCAATTGCAGGAGTCC
GCCGACCTTGCTGCCGCTGTTGTCGCTCGCGCTGCGTCTGTTAGAACCCA
GCGTGCGTACATCACTTTAAATGCCAAATATATCAGTCGTGTCGCTTCCA
TGCCCTTCCCTGCTGCAGTACCATCTTCTGACGCGTATTCTCAACTTATT
CAAACCGTCAAAACTGCACTGAATGACATTTTAGTCATCTGCGATGAGAC
GGGTACTACCATTGATTCCCCGGATTATGTTCGAGGATGGGAACGCCCAC
TGTGGAAAAGAAAATTTTGTCGGCCGTCACGGCAAATAAATCAACGACGC
AAGATCTCACGTTGTCCATTACTGATTCTTTTTCGCAGGTAAAACGCCTG
TTGGACCGAGGTTCTTCTGGTCCGGATGCTTTTCAGCTACTGCTGCGCCA
TCTCGCTGACCATTTTGATTCTGGCGATGGCCAGGAATCGTTTCGGCGTT
TGCAGACCTTCGGCGTCTGTGATGGCACTCCGTTTGCTGATTATTTGCGG
TCTTTTCGTTTATTGGTGTCGGCCGTTACTGGTACTGAGCGTGTTTTAGC
ACCTAGTGTTGCTGCTATGGTTTTAGGGCTCGTGAGGCACAGCGTCATGA
AGCAGTTCCCGACTTTGTATCCTATGTTGTACCCATCTGAGTTGGCTACT
ATTCGGACCCCGTTTGTTAGTATTGCTGCCATGTGGGAATCCTTCTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9257:1163..3361-

>mRNA_L-elsbetiae_contig9257.18268.1 ID=mRNA_L-elsbetiae_contig9257.18268.1|Name=mRNA_L-elsbetiae_contig9257.18268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig9257:1163..3361- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTGAGAGAGGCGAAGCTGGCCTGCGACGAGACTGCCGAGCGCGA
GCGCTGGGCCAGTCAGCTGGATGCCTTCGCGCAACCTTCGTCTCCACGCC
TAGACCCGATCTCGGCGACGGCGCCCCCGGCTTCTTCGACGGCCGCAACA
TCTCCCTCGGCGGCAGCAACAGCGGAATCTTCCCCCCCTGTCCGAGCTGC
CCCTGCGACCTCCGCGCCGCCTCCTGCTTCGACCACAGTGCCCGCCACTG
TTTTGGCTCCTGTCTCGATGGCTGACTTTCCTGCTCTCGCGCCGGACCCG
GTTTCGGCTCCTTCATGGTCTACCGTTGCCGCTGGCTCAGCGGCGACACA
CCCCCGGGCAGCGACCCTATTCGTCCACGGTGATAAGCGTTGGGCAGACT
CGAGCATCGCGCGGTTTGCCGAGCGCCACCCGAACGGCCTTCGACACGTT
GACAGCCTCACCATCACCCAGCTCGCGCTGCGTCTGCTTCTCACCATTGG
CCAGGATAACTCCGGCATCACGTTGCACCAGCTAGCCAACGTCTCGCACC
GTCCCCTGACGCCAGCGACAGAGAGCCACCTCCAAGATCTTCTTGCCGCG
CTCCGAGCGGCTGCGGCGAACGCCCCTGCGGCGGCTCCGTGGATGCGGGA
CAGGCCGGGCGTGTGGTCTGGGTCTTGGGCGGAGCCTTCGTCTTCGTCGC
TGCCTCGTGGACGGAGTGCAGCGGGTGTGGGTGGTGGCCGGCTGGACGCT
CCGGAAACCAGTCGCTCGGCGTCCCGTGACAAACATGCTTCTGAGAGAGG
CGAAGCTGGCCTGCGACGAGACTGCCGAGCGCGAGCGCTGGGCCAGTCAG
CTGGATGCCTTCGCGCAACCTTCGTCTCCACGCCTAGACCCGATCTCGGC
GACGGCGCCCCCGGCTTCTTCGACGGCCGCAACATCTCCCTCGGCGGCAG
CAACAGCGGAATCTTCCCCCCCTGTCCGAGCTGCCCCTGCGACCTCCGCG
CCGCCTCCTGCTTCGACCACAGTGCCCGCCACTGTTTTGGCTCCTGTCTC
GATGGCTGACTTTCCTGCTCTCGCGCCGGACCCGGTTTCGGCTCCTTCAT
GGTCTACCGTTGCCGCTGGCTCAGCGGCGACACACCCCCGGGCAGCGACC
CTATTCGTCCACGGTGATAAGCGTTGGGCAGACTCGAGCATCGCGCGGTT
TGCCGAGCGCCACCCGAACGGCCTTCGACACGTTGACAGCCTCACCATCA
CCCAGCTCGCGCTGCGTCTGCTTCTCACCATTGGCCAGGATAACTCCGGC
ATCACGTTGCACCAGCTAGCCAACGTCTCGCACCGTCCCCTGACGCCAGC
GACAGAGAGCCACCTCCAAGATCTTCTTGCCGCGCTCCGAGCGGCTGCGG
CGAACGCCCCTGCGGCGGCTCCGTGGATGCGGGACAGGCCGGGCGTGTGG
TCTGGGTCTTGGGCGGAGCCTTCGTCTTCGTCGCTGCCTCGTGGACGGAG
TGCAGCGGGTGTGGGTGGTGGCCGGCTGGACGCTCCGGAAACCAGTCGCT
CGGCGTCCCGTGACAAACGTAAAACGCCTGTTGGACCGAGGTTCTTCTGG
TCCGGATGCTTTTCAGCTACTGCTGCGCCATCTCGCTGAGTAAAACGCCT
GTTGGACCGAGGTTCTTCTGGTCCGGATGCTTTTCAGCTACTGCTGCGCC
ATCTCGCTGA
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