mRNA_L-elsbetiae_contig925.18265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig925.18265.1
Unique NamemRNA_L-elsbetiae_contig925.18265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 3.090e-109
Identity = 187/200 (93.50%), Postives = 197/200 (98.50%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAEGDE 663
            MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQ+VFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMV +LGDQPQDVLRGAADEVLAWLKD+SLTDHKR++GVE+ILGKM  +RFHKLV+LGKSITDFSAEG++
Sbjct:    1 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQKVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVASLGDQPQDVLRGAADEVLAWLKDESLTDHKRQEGVEEILGKMRPERFHKLVSLGKSITDFSAEGED 200
[Close]
BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.100e-55
Identity = 112/200 (56.00%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKR-----SRMQRVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFS 648
            MAE+  RN+ FEYKANSNLVL A+R  +RRGE+GTGEVESL G+ K  KMGDRL     PELE + +K++AKRER   GEE+    +     S+ Q+VFVAG G+TVLTET+E+DSINYRPKT++S+ AYEE+++ +  +LG QPQD++RGAA+E+L+ LKDD++ D +R+  +E +LGK+ +++F++LVN+GK ITDF+
Sbjct:    1 MAEEHARNRQFEYKANSNLVLQAER-GKRRGEDGTGEVESLWGKTKHMKMGDRLTTARPPELETKLQKAKAKRER---GEEEALKSKALETASKRQKVFVAGTGATVLTETQEMDSINYRPKTRESKAAYEELMAYVQVSLGAQPQDIMRGAAEEILSILKDDTMKDTQRQADIEKLLGKVKSEKFNELVNVGKRITDFN 196
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.770e-42
Identity = 104/209 (49.76%), Postives = 145/209 (69.38%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRDS--RRRGEEGTGEVESL-HGRMKGQKMGDRLDKGNK--PELEERKKKSQAKRERKATGEEQE------RNKRSRMQRVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAEG 657
            M+ +  + K ++Y ANSNLVL ADR    RRR +E TGEVE     ++ G++MGDR+  G    PE+EER ++S+ KRER+  G E        R K S+ + VF AG+G+TVLTETE L++INYRP+  +S+ AYEE+L  + G +GDQPQD+LRGAADEVLA LKD+SLTD +R   ++ ++ K++ ++F+KLV LGK I DF+  G
Sbjct:    1 MSLEFEQQKKYDYTANSNLVLEADRGEGGRRRHDEATGEVEVWDEKKLSGKRMGDRVGGGRTRAPEVEERLQRSKEKRERELRGLEGGKKIAGGRTKESK-KGVFSAGRGATVLTETEALEAINYRPRHPESKRAYEEMLGLIKGNIGDQPQDILRGAADEVLAILKDESLTDPRRLTEIQKLIRKLSPEKFNKLVTLGKGIHDFNTGG 208
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: UPI00081181E8 (putative U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081181E8)

HSP 1 Score: 149 bits (375), Expect = 2.010e-40
Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAE 654
            MA+ A R   +EYKANSNLVL AD     R R +E TGEV SL G+++G +MGDR  +    ++EERK K               R KR   Q  F   KG+T+L+E  +E+  I YRPKT+++R  YE +LS +  ALGDQP+D+L GAADE+LA LK+D L D +RK  ++ +LG +T +RF  LVNLGK ITDF ++
Sbjct:    1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVVSLVGKLEGTRMGDRYQRTKPEKMEERKAK---------------RQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEILAVLKNDKLKDRERKREIDSLLGSVTDERFALLVNLGKKITDFGSD 185
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: UPI00193C8CFD (putative U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193C8CFD)

HSP 1 Score: 147 bits (371), Expect = 1.620e-39
Identity = 97/200 (48.50%), Postives = 123/200 (61.50%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAE 654
            MA+ A R   +EYKANSNLVL AD     RRR +E TGEV SL GR+ G +MGDR  +    + EERK K               R KR   Q  F   KG+T+L+E  +E+  I YRPKT+++R  YE +LS +  ALGDQP+D+L GAADEVLA LK+D L + ++K   E +LG +  +RF  LVNLGK ITDF  E
Sbjct:    1 MADAAARQLQYEYKANSNLVLQADVRLIERRRRDEATGEVMSLVGRLDGTRMGDRFQRTKPVKAEERKVK---------------RQKRDEAQYDFARMKGATLLSEGVDEMVGILYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLAVLKNDRLKEREKKVETESLLGGLAEERFALLVNLGKKITDFGTE 185
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: F0Y9C7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9C7_AURAN)

HSP 1 Score: 155 bits (393), Expect = 1.780e-39
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILG-KMTADRFHKLVNLGKSITDFSAE 654
            MAE+  RN+ +EY+ANSNLVL ADR++RRR +E TGEVESL G+M GQKMGD+L +   P+LEE+ ++++A RE++  G+ +E  +  R +R    G             S  Y PKTK++R AYE +L+ + GA+GD P+DVLRGAADEVL  LKDD + D  +   +E + G K+  +RF  LV LGK I DF  +
Sbjct:    1 MAEEFARNRQYEYRANSNLVLEADRENRRRTDEPTGEVESLFGKMGGQKMGDKLGRNKAPDLEEKARRAKASREKRQRGDAEEHTRGKRKRRSGAEGDDGG--------SSGAYEPKTKEARGAYEAILAGVRGAMGDVPRDVLRGAADEVLYTLKDDRVKDPDKHVQLERLFGAKVAPERFAALVALGKQIVDFGLD 190
[Close]
BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: UPI001EE5D45A (LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EE5D45A)

HSP 1 Score: 155 bits (392), Expect = 2.410e-39
Identity = 98/200 (49.00%), Postives = 126/200 (63.00%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAE 654
            MA+ A R+  +EYKANSNLVL  DR    RR  +E TGEV SL G++ G +MGDR  K   P++EERK K               R KR   QR  +  KG+T+L+E  +++  I YRPKT ++R  YE +LS +  A+GDQP+DVL GAADEVLA LK+D + D +RK  VE +LG M  +RF  LVNLGK ITD+  E
Sbjct:    1 MADAAARSLQYEYKANSNLVLQVDRSLIDRRARDESTGEVMSLVGKITGTRMGDRAQKTKPPQMEERKNK---------------RRKRDEAQRDMIKMKGTTLLSEGIDQMVGILYRPKTTETRQTYEVLLSFIQAAIGDQPRDVLCGAADEVLAVLKNDRMKDRERKREVEGLLGNMAEERFALLVNLGKKITDWGQE 185
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BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: A0A2R2MMN6_LINUN (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MMN6_LINUN)

HSP 1 Score: 152 bits (383), Expect = 2.630e-39
Identity = 98/200 (49.00%), Postives = 126/200 (63.00%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAE 654
            MA+ A R   +EYKANSNLVL  DR    RR  +E TGEV SL G++ G KMGD+  +   P++EERK K               R KR   QR  +  KG ++L+E  +E+  I YRPKT ++R  YE +LS M  ALGDQP+DVL GAADEVLA LK+D + D +RK  VE +LG+M  +RF  LVNLGK I+D+ +E
Sbjct:    1 MADAAARQLQYEYKANSNLVLQVDRSLIDRRARDEATGEVMSLVGKLVGTKMGDKSMRTKPPQMEERKAK---------------RRKRDEAQRDMLKMKGQSLLSEGIDEMVGILYRPKTPETRQTYEVLLSIMQSALGDQPRDVLCGAADEVLAVLKNDRMKDKERKKEVEALLGEMQEERFALLVNLGKKISDWGSE 185
[Close]
BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: K1RGJ6_CRAGI (Uncharacterized protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RGJ6_CRAGI)

HSP 1 Score: 145 bits (367), Expect = 3.880e-39
Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAE 654
            MA  A R   +EYKANSNLVL ADR    +R  +E TGEV SL G++ G +MG++  +   P++EERK K               R KR   QR  +  KG+T+L+E  ++   I YRPKT+++R  YE +LS +  ALGDQP+DVL GAADEVL  +K+D L D +RK  VE++LG +  +RF  LVNLGK ITD+  E
Sbjct:    1 MAGAAARALQYEYKANSNLVLQADRSLIEKRARDEPTGEVTSLVGKIAGTRMGEKAMRSKPPQMEERKVK---------------RTKRDEAQRDMMKMKGATLLSEGIDDFVGIVYRPKTQETRQTYEVILSFIQAALGDQPRDVLCGAADEVLQVMKNDRLKDKERKKEVEELLGGLAEERFAVLVNLGKKITDWGQE 185
[Close]
BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Match: A0A0S7FJZ0_9TELE (U520 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FJZ0_9TELE)

HSP 1 Score: 145 bits (365), Expect = 1.230e-38
Identity = 94/202 (46.53%), Postives = 124/202 (61.39%), Query Frame = 1 
Query:   64 MAEDAVRNKIFEYKANSNLVLTADRD--SRRRGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATGEEQERNKRSRMQRVFVAGKGSTVLTE-TEELDSINYRPKTKQSRIAYEEVLSTMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTADRFHKLVNLGKSITDFSAEGD 660
            MA+   RN  +EYKANSNLVL ADR    R R +E TGEV SL G+++G KMGD+  +    +LEER+ K               R KR   +      KG T+L+E  +E+  I Y+PKTK++R  YE +LS +  ALGDQP+D+L GAADEVLA LK+D + D +R+  VE +LG     R+H LVNLGK ITD+  + D
Sbjct:    1 MADVTARNLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTKPQKLEERRDK---------------RRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFIHAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPSDDTRYHVLVNLGKKITDYGGDKD 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig925.18265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI3.090e-10993.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNN3_9STRA2.100e-5556.00Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
W7TFU8_9STRA3.770e-4249.76U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
UPI00081181E82.010e-4047.50putative U5 small nuclear ribonucleoprotein 200 kD... [more]
UPI00193C8CFD1.620e-3948.50putative U5 small nuclear ribonucleoprotein 200 kD... [more]
F0Y9C7_AURAN1.780e-3947.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI001EE5D45A2.410e-3949.00LOW QUALITY PROTEIN: U5 small nuclear ribonucleopr... [more]
A0A2R2MMN6_LINUN2.630e-3949.00U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
K1RGJ6_CRAGI3.880e-3947.00Uncharacterized protein n=1 Tax=Crassostrea gigas ... [more]
A0A0S7FJZ0_9TELE1.230e-3846.53U520 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig925contigL-elsbetiae_contig925:21013..27268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.3
Seed ortholog evalue1.2e-95
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons7
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816997.0133288-CDS-L-elsbetiae_contig925:21012..211201622816997.0133288-CDS-L-elsbetiae_contig925:21012..21120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 21013..21120 +
1691683970.6151648-CDS-L-elsbetiae_contig925:21012..211201691683970.6151648-CDS-L-elsbetiae_contig925:21012..21120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 21013..21120 +
1622816997.0257351-CDS-L-elsbetiae_contig925:22332..224701622816997.0257351-CDS-L-elsbetiae_contig925:22332..22470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 22333..22470 +
1691683970.6276822-CDS-L-elsbetiae_contig925:22332..224701691683970.6276822-CDS-L-elsbetiae_contig925:22332..22470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 22333..22470 +
1622816997.036254-CDS-L-elsbetiae_contig925:23657..238391622816997.036254-CDS-L-elsbetiae_contig925:23657..23839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 23658..23839 +
1691683970.6376376-CDS-L-elsbetiae_contig925:23657..238391691683970.6376376-CDS-L-elsbetiae_contig925:23657..23839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 23658..23839 +
1622816997.0473127-CDS-L-elsbetiae_contig925:24691..247941622816997.0473127-CDS-L-elsbetiae_contig925:24691..24794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 24692..24794 +
1691683970.6489964-CDS-L-elsbetiae_contig925:24691..247941691683970.6489964-CDS-L-elsbetiae_contig925:24691..24794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 24692..24794 +
1622816997.06051-CDS-L-elsbetiae_contig925:25513..255941622816997.06051-CDS-L-elsbetiae_contig925:25513..25594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 25514..25594 +
1691683970.6675-CDS-L-elsbetiae_contig925:25513..255941691683970.6675-CDS-L-elsbetiae_contig925:25513..25594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 25514..25594 +
1622816997.0750291-CDS-L-elsbetiae_contig925:26672..267901622816997.0750291-CDS-L-elsbetiae_contig925:26672..26790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 26673..26790 +
1691683970.6844938-CDS-L-elsbetiae_contig925:26672..267901691683970.6844938-CDS-L-elsbetiae_contig925:26672..26790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 26673..26790 +
1622816997.0861633-CDS-L-elsbetiae_contig925:27230..272681622816997.0861633-CDS-L-elsbetiae_contig925:27230..27268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 27231..27268 +
1691683970.709273-CDS-L-elsbetiae_contig925:27230..272681691683970.709273-CDS-L-elsbetiae_contig925:27230..27268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig925 27231..27268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig925.18265.1prot_L-elsbetiae_contig925.18265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig925 21013..27268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig925.18265.1

>prot_L-elsbetiae_contig925.18265.1 ID=prot_L-elsbetiae_contig925.18265.1|Name=mRNA_L-elsbetiae_contig925.18265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
ARQPRRTRLPSTCVRGKRVATMAEDAVRNKIFEYKANSNLVLTADRDSRR
RGEEGTGEVESLHGRMKGQKMGDRLDKGNKPELEERKKKSQAKRERKATG
EEQERNKRSRMQRVFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVL
STMVGALGDQPQDVLRGAADEVLAWLKDDSLTDHKRKDGVEDILGKMTAD
RFHKLVNLGKSITDFSAEGDEDKDKDKEDRDQDEEHEKLDEDMGVAVVFD
DDDDKD
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mRNA from alignment at L-elsbetiae_contig925:21013..27268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig925.18265.1 ID=mRNA_L-elsbetiae_contig925.18265.1|Name=mRNA_L-elsbetiae_contig925.18265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6256bp|location=Sequence derived from alignment at L-elsbetiae_contig925:21013..27268+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGACAACCCAGGCGAACTCGCTTGCCCTCTACGTGCGTGCGAGGAAA
GAGAGTTGCAACCATGGCGGAGGATGCGGTTCGCAACAAGATCTTCGAGT
ACAAGGCGGTGAGTACATTTGCAGCAGATCTCTGCCCTCCCCCCTTCTGC
GGTGGTGTCGCGGGCACCCCAACAGGGCGTCTTGGCGAGCAGATCAGTGT
CAGATTTTGGGAGGCACACCCGGAAATTTCCAGAGAATCATACGCACGTA
GCAACGGATTGTTGCGTCGGGGGTGATTGCTGTTGTTTTTTCTTGTGTGA
GGACATATTATTGTCAAGAAAGTCATGTTTTCCTTGCCCCGCTGCTGCTG
CCAGCTGCCATCCCGCACCGACAGAGTCTCTCTCGATGGCATGGCGGGGC
CTGTTGTTTCCCGGACGACCGCACTGCGCGTGTCTTTTTTTTCCTCGCCT
TACGTGGATGAAGGCGTCGCGGGTCGCTCTTCACGAGTACTGCAGCCGCA
CGCTTCTTTCCTCTGTATCTACTATTTTTCTAGTCCGACGGCCATGGCGT
ACAAACAGCAACAGTGGCAGTCAAAAGGGTATCCAGGCCAACCTCGTCAC
ACCTGGCCGCCTGCATCCACCTCAGAATGCGTTTAGTCTTGGCCGTGAAG
TATTGATCGCACAACACGTCTAGGGACATGCATGACAGGCCCTCCCAGGG
GCAGCCTAGTTAGTGATGAGACCCATCGACCCGAGGTTATCGGTGATCCA
CGGAGCCCCTTTTCGTTTGTTTTTACCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCTCACCCCCC
CCCACCCCCACACCACCACNNNNNNNNNNCCCCGGGGGCCCCCGTGTTAG
GGAGTACCCCCCCCCCCCCGGGGTTTCGGGTGCCCCCGCGCCCCCCTTTC
CTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCATTCTCCCC
ACGCCGTCGTCCTGAAAATGCTTATTTTTTCCAAACCAACCCGAATGTAG
ATAACAAATATAACCCCCCCTCTCACTCGCACCTTCCTCGTCGTGGGCTG
GAAAATGCTGGTGTTTTCAGAATAGACAATGGTACCCCACCCATCTCACG
CATTGCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGGCCCCCCCTTTTC
CCCCCTTTCCCGTCCCGGTTTTCTGCATAGAACTCCACCCTTGTGCTCCC
GGCCCGCCCCACCCTCGCCCTGGCATGGCCTGCCTTTGTCCCTCTTCTCC
GTTCCGTGTTGTCTGAATAGAACTCCAACCTTGTGCTCACGGCCGACCGA
GACTCTCGTCGCCGAGGAGAGGAGGGGACGGGAGAGGTCGAGTCCCTCCA
TGGGCGCATGAAGGGGCAGAAGATGGGGGACAGGCTGGACAAGGGCAACA
AGCCGGAGGTGCGAGCGTGTCCGTGCGTGGGTGCGTGGGTGTTTCCGTGT
TCGCGTTGTATACTGCCAACAGCCGCAGCAGAGGAAGAAAGCAGTTTTTT
CTGCCCGTGCCCGTGCCCAAGAAAAGTTTTTTTGTCACTATGATGACTGT
GACTGCTTTACTTACACATGTTGTGTTGTGTAATCTTCACATCAAAAAAA
CCGTTTCGATCTCTCTATCCAGTACACCTCCATGAGTCCGTACTAGTCTA
ATCCAACACTGACGCGGCCGATCCCCGTGGTCACAGGATAACCTACCCTG
AAAAAGGGTATAGACTACTGAAAAATGAAAAGAAATAAAATGGACCCGAA
GGGTCCACAAAGCACGAAAACACAATACCAAAATGTAGGTATACTAGTAG
CGTATTTCTATTATGCATGTACATACCGGTATGTAGGACAAGGGTGTCGC
GATGTTGCTATTTCTACTCTTAATACCTGAGTTACCTTAGGAACGCGGGT
CAATACGCTGTCGGAGTGATGAAACACAGTTACATACTTACCAGACCGAG
GTGCGGTGCGTAGGCTAGGAGCGTGGAATACCACAGAAGAGATGTCCGAG
AGAGCAAGAATAACAAGGGGTCGCTGGATATTATCGGCCTATCATATAAC
AGCAGTGTGCCGGCCGGCTGGTAAGAAAGCTCATCCCGAGTACGAAAGTC
AGCCTGAGATTTTCAAATGATGAATAAAGTGTCAAGCCTCACTTGAGGGC
GGCGAGTGGTGCCACACTAAATTCTGTGGTATTATAGAAGACTACCATAA
CTTTCATAGAAGCGGAAAGTAAACCATTAGGTTGGTCAGTACTGACTGGT
CTGATGGTTTAATTTCCGCTTCTGTAGTAAGATTACTTGCAAAAAAGTGT
TGTGCTCGACTTCCAACCCAACGCGAGAAAGTCGCCCTGAGCCCGATTCC
AGGTTTCTTTTGAGCGGACCGGTGTACTACATACACACAAGACACCACGC
GTTGCTTTGTTGTTTATCATCAGCGGACTCAGCAGCAGGAGGGGAGGAAA
AACCAACACCCGGCACCCAACCCCCGGCCGCAACAGCCATCCACACACCC
CCTCGGCCGTCTGAGTTAAACGCTTGACCCTAATACTCGTTCCCTCTCGT
ACATACACATGCATCCCAACGATGTTGCGGCTGGACACGACACAGCTCGA
GGAGAGGAAGAAGAAGTCCCAGGCGAAGAGAGAGCGGAAAGCCACGGGGG
AGGAGCAGGAGAGGAATAAGCGGAGTCGCATGCAAAGGGTCTTCGTGGCC
GGGAAGGGCTCCACCGTCCTCACGGAGACCGAGGAGCTGGACAGCATCAA
CTACCGCCCCAAAACGAAGCAGAGCAGGTAGGCGGCTACGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTCACATTAAGAACC
GTTCCGATCTCTCTATCCAGTACACCTCCATCAGTCCGTACTAATCCATC
ACTGACGCGGTCGATTCCCGTAGTCACGGGATAACTTACCCCAAAAAGGC
CTACGCAAGGTCGCTTTATTTCATTCTGCGCTGGATTAAGTTGTTTGTGG
TCTTGGGGATAAAGAAAGCCCTTCGCTGCTGAGGCTCTTTGTGCCTTCCT
CGACTGGAAGGGGGCACAGCAGTACCGCAGCCTCCGATCCCAAAGATGTA
TGTACATATTTGCATACAGTAGTGTGTATCATACCTCTCTTTGGCCGTCA
AGAGCAATGACGCGTGTGTTCTATAGTCGCCGCTGTGCCGTTGTCGCTGC
CGCGTGGGGGGGGGGGGGTGCCGCTGTAGTGTCAATTAGCTCAGTGTCGG
GGCGACATTGGGGGCAGAGGAGATTGCTTGGACAGAGTGCGGAATTGTTG
ATTTTGTATTTTCGGTGGACATACATTTTGCATTTTTCCGCGGTCTGTTG
CTTCGTTTTGCCAATTCGTATGTACATACATATGTGCGAGAACGTGACGT
CCCCTCCGATGAAAATGAAAACGAAAGATACAACCTCAAGCGCGTCCGAC
GAGGGAAAGGCGCCCTGCCCCCACCCCCCCCCCCCCCCTATTGTTCGTGT
TTTTCCTCGTTTGCCGAGACCCGCCGTTGTTGCTCTCTTGTTTATGGAAG
TTTTATGTCTACATATGTATCATTTTGTTGTTTTTTTATTTCTGCTTTTT
TTTTGTCGCTTGTTCGCGGCCCTCTTCAGGATCGCGTACGAAGAAGTCTT
GTCCACCATGGTTGGGGCTCTAGGAGACCAGCCGCAGGACGTCCTGCGAG
GAGCGGCTGACGAGGTGCTGGCGTGGCTCAAGGTGGGAGAGAGGGCAGGA
GAGAGCCAGCCCCAAGGGTGTATGTCAAGGCAGCAACTGTTTTTTTATCA
CGGAGAATTCCATTTGTTGCACACGTACAACATGGAGTACGTGACATGTT
GGATTCGTGTTGTCGACCTGGTCGGTCTCCGCCAGCCTAAACTGCTGACC
GCCCACTCCTCGTGCTGGCCGAAATGGACGTTTTCTTCCCAGTTCCTCAA
GGGTATCTACCAGCTGACAGCGATGTTTCTCTGCCACCAGTATTTCTCTG
CCACCAGTGTTTCTCTGCCACCAGTGTTGGTGATTTCTAGTATTGCTGTC
CATTAGACAACCGTGGGGCCACAACGTCGTGGCCTTGTGTTGTTTAACAG
AGCACACTAGGGAAAGGGACGGCTGAGCCCTTCTCGCTATAAAAGTCGTA
GGCATCGAACAGCACCGCAGAGGGTGGGGATGGGGGCCTCGGGGAGAGGG
GCCCTTCTGTGTGACCTGACCACGGTTCAGTGCTCTGGCAAGATGCCCTC
GTGGCAAGGAGCCCGCCGTGCACTGGCAATAAATGTGAAAAAAATAGAAA
CTACTCCTTGTTGATTCGCGGAGCTTTTGGGCAGAGCGGTGCAAAACTAC
GAAGTGGTGCTGTGCGCTTACAAACTTGTGTTCACTCAATCGCGTCTACT
TTAAAAGAATTTATGTGCTCATTTTATGGAAAATTAATTTTCCCTCGCCA
GGACGATTCCCTCACCGACCACAAGCGGAAGGACGGCGTGGAGGACATCC
TCGGGAAAATGACTGCGGACCGATTCCACAAGGTAACGTAGAACGTGACG
TCGTGTACATTTATGGAACGCGTTTTTTTTAGATATGAACGTCACTCGTC
CGCGTCCAGCCTCTGTCTATGGTAGAACCTTTCGAAGGTTATGTATGTAT
GTATGCATGGGTAACTGTGTGACTGTTGTTGACTGTGTAACTGCTGTAGA
CACTTTCTATATTAATTGCCCTCGCCGCCCTCCCGGCTACAGCATGTAGC
GCCATTGTTTGTTGTGGGGGGGTGTTATTTAACGTACGGGAAGATGTCGC
TGGACGGGCCGACGGACTTCACAGAGTAACGTAACGAGGCGTTTACCTAC
CTGTGAACCTTGAACGTGTGGGTGTGTGCACAACGGCTTTTGGTGTGGGT
TTCCGTCGCACGGCGCAGAACGGCGCAGGTAAACGTGTGTCGATGGCCCT
TCGCAACCAATCAGATCACACCTAACACGCCTCCTTTAGTTTCGCAGTTG
TCGTCGTCGTCCACATCTACTGTTCTACATCCACTGCTGTTTTTCTCCCC
TTTCGTGAAGTGATACGAGTATCTTGCAGTCACAGACAGCACTGGTCCTA
ACTGGCTCCAAGCTTATCCTTACTCGTTTACAACCGCAACCGTTGGGGTT
CTACCATGTACGGGGGGGGGGGGGGCGCAGGCAATCACATGTTTCGCTGC
ACGCGGAATACCAGACCTTTACGCCATTCCCGCGGGAAAGCTGTACCCCG
TACAGCAATATGATGCAGCTAAACTACCTTATGCTGGGACGGAAGGGGCG
GTGTCTAAATAGGGGATATCGGCGCCGTTCTTGTCAACATGTTGCAGCTA
AGTTTTCGTGTACACGAAGCGATCGCCCCCCCTTTCCGATCTGCCTGCCC
CCCCCCCCCTTGGTTAGTCTTCGGATGACCACTGCAAGCTTTAGACTGAC
CCTCCCTTCTCCGCCGCGCTCCGCGCTGCTAGTGAGCAACCCCCCCCGCG
ATAGCGAGCACCCTCCCCTCTTCTGACGATGCGATTGGCCTGTCCTTCAT
TCTTCCCCCACCGGCACCGATCATGCTTGGCGATTTTGTCGATCGTTTTC
TCTTTGTCAGCTGGTGAACCTGGGGAAGAGCATCACGGACTTCTCCGCCG
AGGGAGACGAGGACAAGGACAAGGACAAGGAGGACAGGGATCAAGACGAG
GAGCACGAGAAGCTCGACGAAGACATGGGTGAGTCTTTTCTTGCTTCCTT
CTTGTTCTTTCGTTGGGTCTCTTCGGATGGACCGGTCCTGTCGAAACAGC
TTGCCGGCCGTCAAAGAAAAATATACCTGATTTATTGCTCTCTTTTGCTA
TTTTGCTCCCTTTGCTCTCTTGCTCTCTTTAGTCTATTGCTCTCTTTGCT
CTCTTTACTATCTTGCCCTCTCTTGCGTTGTTGCTCTTTTTCTACTTTTG
CTCTCTTGTTTCTCTTGCTCTCTTGCTTCGGCACGAAGAAAACATTTTTC
TACGGATGACTTCCGACCCACCACTATTTTTTTCGGCCTTAAAAACCCAT
AATACTACTGTACCTGCGTGCGTCTCACCTCCCTATAACCCCGCACACAT
AATGTTCCTTGCTGTTTGTGTGTGTGCGCGTGTGACTTGATTGGTATCCT
CGATATCCTCCACTTCAGGGGTTGCGGTCGTGTTCGACGACGACGACGAC
AAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig925:21013..27268+

>mRNA_L-elsbetiae_contig925.18265.1 ID=mRNA_L-elsbetiae_contig925.18265.1|Name=mRNA_L-elsbetiae_contig925.18265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig925:21013..27268+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGACAACCCAGGCGAACTCGCTTGCCCTCTACGTGCGTGCGAGGAAA
GAGAGTTGCAACCATGGCGGAGGATGCGGTTCGCAACAAGATCTTCGAGT
ACAAGGCGGCCAGACAACCCAGGCGAACTCGCTTGCCCTCTACGTGCGTG
CGAGGAAAGAGAGTTGCAACCATGGCGGAGGATGCGGTTCGCAACAAGAT
CTTCGAGTACAAGGCGAACTCCAACCTTGTGCTCACGGCCGACCGAGACT
CTCGTCGCCGAGGAGAGGAGGGGACGGGAGAGGTCGAGTCCCTCCATGGG
CGCATGAAGGGGCAGAAGATGGGGGACAGGCTGGACAAGGGCAACAAGCC
GGAGAACTCCAACCTTGTGCTCACGGCCGACCGAGACTCTCGTCGCCGAG
GAGAGGAGGGGACGGGAGAGGTCGAGTCCCTCCATGGGCGCATGAAGGGG
CAGAAGATGGGGGACAGGCTGGACAAGGGCAACAAGCCGGAGCTCGAGGA
GAGGAAGAAGAAGTCCCAGGCGAAGAGAGAGCGGAAAGCCACGGGGGAGG
AGCAGGAGAGGAATAAGCGGAGTCGCATGCAAAGGGTCTTCGTGGCCGGG
AAGGGCTCCACCGTCCTCACGGAGACCGAGGAGCTGGACAGCATCAACTA
CCGCCCCAAAACGAAGCAGAGCAGCTCGAGGAGAGGAAGAAGAAGTCCCA
GGCGAAGAGAGAGCGGAAAGCCACGGGGGAGGAGCAGGAGAGGAATAAGC
GGAGTCGCATGCAAAGGGTCTTCGTGGCCGGGAAGGGCTCCACCGTCCTC
ACGGAGACCGAGGAGCTGGACAGCATCAACTACCGCCCCAAAACGAAGCA
GAGCAGGATCGCGTACGAAGAAGTCTTGTCCACCATGGTTGGGGCTCTAG
GAGACCAGCCGCAGGACGTCCTGCGAGGAGCGGCTGACGAGGTGCTGGCG
TGGCTCAAGGATCGCGTACGAAGAAGTCTTGTCCACCATGGTTGGGGCTC
TAGGAGACCAGCCGCAGGACGTCCTGCGAGGAGCGGCTGACGAGGTGCTG
GCGTGGCTCAAGGACGATTCCCTCACCGACCACAAGCGGAAGGACGGCGT
GGAGGACATCCTCGGGAAAATGACTGCGGACCGATTCCACAAGGACGATT
CCCTCACCGACCACAAGCGGAAGGACGGCGTGGAGGACATCCTCGGGAAA
ATGACTGCGGACCGATTCCACAAGCTGGTGAACCTGGGGAAGAGCATCAC
GGACTTCTCCGCCGAGGGAGACGAGGACAAGGACAAGGACAAGGAGGACA
GGGATCAAGACGAGGAGCACGAGAAGCTCGACGAAGACATGGCTGGTGAA
CCTGGGGAAGAGCATCACGGACTTCTCCGCCGAGGGAGACGAGGACAAGG
ACAAGGACAAGGAGGACAGGGATCAAGACGAGGAGCACGAGAAGCTCGAC
GAAGACATGGGGGTTGCGGTCGTGTTCGACGACGACGACGACAAAGACGG
GTTGCGGTCGTGTTCGACGACGACGACGACAAAGAC
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