|
|
Homology
BLAST of mRNA_L-elsbetiae_contig925.18263.1 vs. uniprot
Match: D8LHW2_ECTSI (HP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW2_ECTSI) HSP 1 Score: 135 bits (340), Expect = 4.480e-31 Identity = 96/230 (41.74%), Postives = 117/230 (50.87%), Query Frame = 3
Query: 84 PSAAALALERENLLLSVFGRQAGVAELATV----GRSNSCHVFLEAASRVAALPPLERSLLADLDRSSDDEGGDGGG------------------DCGRGGVRRSKRDGVTASQPPAXXXXXXXXXXXXXXXXXXXXXKRELPLLLRVGYAEGGRQFDAGREATTTSTAYRYRRLAGKSGRGWPPRVDPARREEWLCPIEFEAVFGMRFAEFEELPSWKRTLLKQEVHLF 707
PS A L RE + +VFG++A A ATV G +S + L AA+R+ ALP ERSLLA+LDR+SD + G+G D GV S + G PP+ P LLRVG G D G +T +RYRRL G S RGWP V+PARREEWLCP+EFEAVF M F+EF LPSWKR LK+E+ LF
Sbjct: 119 PSLATRTLNREERIRTVFGQKAVEAAAATVAPTSGSDSSSQLLLAAANRIYALPAQERSLLAELDRASDVDEGEGXXXXXXXFVDDTGVVVAANVDNTNEGVISSPQGGHEGGAPPSPSLQGDGNPARASAE----------PPLLRVGSGGG----DGG-----GTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 329
BLAST of mRNA_L-elsbetiae_contig925.18263.1 vs. uniprot
Match: A0A6H5L198_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L198_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.580e-27 Identity = 96/241 (39.83%), Postives = 118/241 (48.96%), Query Frame = 3
Query: 39 WGAMNKGEFFAEDGPPSAAALALERENLLLSVFGRQAGVAELATV----GRSNSCHVFLEAASRVAALPPLERSLLADLDRSSDDEGGDGGG-----------DCG---RGGVRRSKRDGVTASQPPAXXXXXXXXXXXXXXXXXXXXXKRELPLLLRVGYAEGGRQFDAGREATTTSTAYRYRRLAGKSGRGWPPRVDPARREEWLCPIEFEAVFGMRFAEFEELPSWKRTLLKQEVHLF 707
WGA + PS A L RE + +VFG+ A A ATV G +S + L AA+R++ALP ERSLL +LDR+SD E G+G D G ++ G PP+ P LRVG G D G +T +RYRRL G S RGWP V+PARREEWLCP+EFEAVF M F+EF LPSWKR LK+E+ LF
Sbjct: 470 WGATKS----SGGDSPSLATRTLNREERIRTVFGQNAVEAAAATVAPASGSDSSSQLLLAAANRISALPAQERSLLEELDRASDVEEGEGDXXXXXXXXXFVDDTGVVVAANGDKTNEGGHEDGAPPSPSLQGDGTSSRASAE----------PPFLRVGSGGG----DGG-----GTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 687
BLAST of mRNA_L-elsbetiae_contig925.18263.1 vs. uniprot
Match: A0A7S0RP46_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RP46_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 1.670e-7 Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 3
Query: 516 STAYRYRRLAGKSGRGWPPRVDPARREEWLCPIEFEAVFGMRFAEFEELPSWKRTLLKQEVHLF 707
+ +Y Y L +G GWP VDP+ RE +C EF VFGM + + LPSWKRT+LKQ+ LF
Sbjct: 167 AVSYPYSYLV--AGVGWPAAVDPSARETHMCAAEFAQVFGMSWDAYCALPSWKRTVLKQQHRLF 228
BLAST of mRNA_L-elsbetiae_contig925.18263.1 vs. uniprot
Match: A0A0L8IBK9_OCTBM (Villin-1 (Fragment) n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8IBK9_OCTBM) HSP 1 Score: 60.5 bits (145), Expect = 7.110e-6 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 3
Query: 525 YRYRRLAGKSGRGWPPRVDPARREEWLCPIEFEAVFGMRFAEFEELPSWKRTLLKQEVHLF 707
Y Y LAG+S P VDPA +E +L +EF +VF M +A+F LP W++T LK+ + LF
Sbjct: 272 YAYSMLAGRSPDMLPSEVDPANKERYLTELEFMSVFRMTYADFFNLPQWRKTDLKKNLGLF 332
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Arthropoda |
| Seed ortholog score | 60.8 |
| Seed ortholog evalue | 9e-07 |
| Seed eggNOG ortholog | 126957.SMAR005083-PA |
| Preferred name | qua |
| KEGG ko | ko:K05761,ko:K08017 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0002009,GO:0002165,GO:0003674,GO:0003779,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008150,GO:0008544,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0016043,GO:0022008,GO:0030029,GO:0030030,GO:0030036,GO:0030154,GO:0030182,GO:0030855,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0048513,GO:0048563,GO:0048569,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0060429,GO:0060562,GO:0071840,GO:0097435,GO:0120036 |
| EggNOG free text desc. | Actin binding. It is involved in the biological process described with cytoskeleton organization |
| EggNOG OGs | 38BDF@33154,3B9RZ@33208,3CXQR@33213,41WVM@6656,KOG0443@1,KOG0443@2759 |
| COG Functional cat. | Z |
| Best tax level | Arthropoda |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04812 |
| Ec32 ortholog description | Villin/Gelsolin |
| Ec32 ortholog | Ec-18_000720.1 |
| Exons | 1 |
| Model size | 3091 |
| Cds size | 663 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816996.795291-UTR-L-elsbetiae_contig925:5997..6044 | 1622816996.795291-UTR-L-elsbetiae_contig925:5997..6044 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig925 5998..6044 + |
| 1691683970.4467814-UTR-L-elsbetiae_contig925:5997..6044 | 1691683970.4467814-UTR-L-elsbetiae_contig925:5997..6044 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig925 5998..6044 + |
| 1622816996.819915-UTR-L-elsbetiae_contig925:6707..9088 | 1622816996.819915-UTR-L-elsbetiae_contig925:6707..9088 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig925 6708..9088 + |
| 1691683970.472003-UTR-L-elsbetiae_contig925:6707..9088 | 1691683970.472003-UTR-L-elsbetiae_contig925:6707..9088 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig925 6708..9088 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816996.8090532-CDS-L-elsbetiae_contig925:6044..6707 | 1622816996.8090532-CDS-L-elsbetiae_contig925:6044..6707 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig925 6045..6707 + |
| 1691683970.4601092-CDS-L-elsbetiae_contig925:6044..6707 | 1691683970.4601092-CDS-L-elsbetiae_contig925:6044..6707 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig925 6045..6707 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig925.18263.1 >prot_L-elsbetiae_contig925.18263.1 ID=prot_L-elsbetiae_contig925.18263.1|Name=mRNA_L-elsbetiae_contig925.18263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MNKGEFFAEDGPPSAAALALERENLLLSVFGRQAGVAELATVGRSNSCHV
FLEAASRVAALPPLERSLLADLDRSSDDEGGDGGGDCGRGGVRRSKRDGV
TASQPPAGEGAISSRSREGVVVAAPPAGKRELPLLLRVGYAEGGRQFDAG
REATTTSTAYRYRRLAGKSGRGWPPRVDPARREEWLCPIEFEAVFGMRFA
EFEELPSWKRTLLKQEVHLF* back to topmRNA from alignment at L-elsbetiae_contig925:5998..9088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig925.18263.1 ID=mRNA_L-elsbetiae_contig925.18263.1|Name=mRNA_L-elsbetiae_contig925.18263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3091bp|location=Sequence derived from alignment at L-elsbetiae_contig925:5998..9088+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGCGACCCCCGCCGCAATCAGCTGCAGACTCCCCGATGGGGGGCGATG
AACAAGGGAGAGTTCTTCGCGGAAGACGGTCCTCCTTCCGCGGCCGCCCT
CGCGCTGGAGAGGGAGAACCTCCTCCTCAGCGTGTTCGGGCGTCAGGCCG
GGGTGGCGGAGCTGGCGACGGTCGGACGGAGCAACTCTTGCCACGTCTTC
CTGGAGGCGGCCAGCAGGGTCGCCGCCCTGCCGCCGCTCGAGCGATCCCT
TCTAGCCGATCTCGACCGCTCCTCGGACGACGAGGGGGGCGACGGCGGCG
GCGACTGCGGACGGGGGGGGGTTAGGCGGAGCAAGAGAGACGGCGTCACG
GCATCGCAGCCACCGGCCGGGGAGGGTGCCATCAGTTCGCGCTCGCGTGA
AGGCGTCGTCGTCGCAGCTCCGCCGGCGGGGAAACGAGAGTTGCCACTGT
TGTTGAGAGTGGGCTACGCGGAGGGGGGACGACAGTTTGACGCCGGGAGG
GAGGCGACGACGACGAGCACCGCGTACCGATACAGACGCTTGGCCGGCAA
GAGCGGGAGGGGCTGGCCGCCGCGGGTGGACCCCGCGCGCCGAGAGGAGT
GGCTCTGCCCCATCGAGTTTGAGGCGGTGTTCGGGATGAGGTTCGCCGAG
TTTGAAGAGCTTCCCTCGTGGAAGCGGACTCTTCTGAAGCAAGAAGTGCA
CCTGTTCTAGCGGGGGTCCCGTGTGGCCGGGTCTCGGTCCCGGATGTTGT
TTTAGGTTTTGGAATGGGGTAGGGAGATAGATGCGGCTTGGGAGCCGGTC
GAGAGTAACATGTTCTAGCAGGGGCCCGCCTGTTCTGCCACGGCGGTGCG
GGTTCCGTGGTTTGCTTTCGAGGTGAATGAGTGACGGAGGTGGATCTTGG
GAGTCGAGCGTACCATGCCGCAGTTTGGGTTTTCCTCGTGCAAGTCCGCT
ATGGACTGTCGGCGGGACTGTCGCACATAGAAGGCAACGGCAGGAAGTTC
GTAAGTGTTGGGAGTGGGGGGGCGTTATGACATAAAGTCATGGGTTTCTT
CTGTGTTGGCGTTTTTTTTCCGCCGTTGCCGCCTTGTTCGGAGTGCACTT
TTGTGGCGGATGCCCATTGAGCGACCGATTGCAGCCGCACTAGATAGGGC
GTGGGTTTACCACGCTTGCCGTTGCGGGAATTGTCGGTGGGGGAATGGGC
TATTTGTCGGGGGAAGTCATGCCGAGTCTCACTTCGAAGTATTTATTTTT
TTCTCCTTCGAAATGTTGTACTTGAAGTAAACGTTTTGAGCAAACTGAAT
ATCTACTGGTATCGTTTTTGTTCTATCTTGTTGCTTGGGGGTTGAGTAGT
GTGTATGTAGGCGCGTGAAGCAGGCAGAATTATCGCGTGCTTAAAAGAGT
ATAATGTAAAAAACCCGCCACGCTTGGTGTTGTTTTGGTCCTATTGTTAT
TCTTGGTGATTGTCGGATGTAGACTAATGGCTTGCCCAAATCTAGCGCCT
GTGTGTGTGTGTGTGTGTGTGTGTGTCGTGCAATACCGCACGAAGGGGAG
GAGAAAGGGTTTAGTCTACACACCTATCGGGACCCTTCGTGTTCGCAACC
TTCATGGAACAAGGCGGTCCATCGGTGGGTAGGTATGTGTGTGTGTGCGC
GACGCTTGGCCGCTGCTGATTGGTCTACCGAAGCACAGCAGCAGTGGCCC
GTTGGTGTTTTGGGGTGGTGCAAGGCTGTGGGTGAAGGGTTTGTCTCGTC
GGCGTGAAAGGCATCCGTCACAGGGAACGCTTGTATCAGCTGCATGTAGG
CTGGATGGATGGTTCGGGCATCTTCCGAACCTGTTGTGGAAAGGTTATAT
TTGGTTTTAGGTCTGGCCGATTCACAATTTGTGGGCGGACGGACAGACAG
CGCACAACACAGCAATAAACTAAGTTGTGCTGTTTTTTGCCCACCATTGT
ACCATGCGCTGAATGTAGGCGAGAGAGGCGAGGGCAGTGGTCCCGTGGGG
TGTGGGAGGAGATCGAGAGTAGGTATTGTAAGTACCTGCTTGTTTACTTT
GGTTGCTCTCTCGAGCGTAAGTGTGTCTTGTTCTTGTTCCATGTTATTCT
CTGTCCTCTAGGGTGAAAAGTGATTGGCCGATTTAAGATGAAGAAAGAAG
GGCGTTGAGCGCTTTGGTTTACTCGAAGTACTAGTGCAAGAAGCAGAAGA
CAAGTTTCCGCTTGTCAAAGTCTTCGCTTGATTTTTAAGATTTGCGTGCC
CCCCCCCCCCTAAACGACCCAGGAGCGTGGAGGGGGCACACTGATGGTAT
TTGACCGGGAAGTTGTAGTTTCGTCTGTTGCACCGTGGAGGTGGCGACCT
TGTCTTGGGCTGTGCATCAAACAGTGAATTGACTCTGGGGGCGGGGTAGG
GTTCTCTTCGCGTCAACCATAATTTTCAGAACTTTAGGTTGAGTCCAAAA
ATTGTACCAAAAAAAGGCAGAAACAAGGAAGAGTTGGACTAGACTAGACG
ATGCATACGGAAGAGACGAGCAGCGCGGGTTAATTCTCTAGATAGGCTAA
TACTCTTCTTGATGAGCTGCCGCATATACCCTTAAATGTACTTTACATAG
TACACTCAAGCGAGACGCCCACACTGGGTGGCGTAAAAGGCATGCAAACA
AACCAGAGCGTGTGCGCTCGCTCTCCTCTCATGAGGCTTGCTTAATTTTT
GGCATTGGTGGCACCTTTTTTTTCTGGTACCTCTGGGCAGTTTTTAGTTC
AGGTCTCACGGTGCCTTGGGAGGGAGAGAAGCGCAGAAGTTAGAGATTGG
GAGGATCTGAGATTTTTATCTGGAGTTTTGTCATCCTGCTCGGCAATTTG
TTAGGAATGGCAGAGGGTGCGTTTTTTTTTTTTTTCTTCGCATTTATTTC
CAGTGCTCAGTGGGCTCCCTGCCAAGAGGGCATCTTGCCAGAGTACTGTA
CCGTGGTCGTACAGAAGGGTTCCTTACCCCAAGGCCCCCACTCCCCCCGT
CTGCGGTGCTTGCCTAAGTGCGTTGCGTGTGAAAGAAAACAAAGGAGTCC
AGTCTCAATATGGGCTAGGTTGCATTCTTGATTAAGGGCGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig925:5998..9088+ >mRNA_L-elsbetiae_contig925.18263.1 ID=mRNA_L-elsbetiae_contig925.18263.1|Name=mRNA_L-elsbetiae_contig925.18263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig925:5998..9088+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAAGGGAGAGTTCTTCGCGGAAGACGGTCCTCCTTCCGCGGCCGC
CCTCGCGCTGGAGAGGGAGAACCTCCTCCTCAGCGTGTTCGGGCGTCAGG
CCGGGGTGGCGGAGCTGGCGACGGTCGGACGGAGCAACTCTTGCCACGTC
TTCCTGGAGGCGGCCAGCAGGGTCGCCGCCCTGCCGCCGCTCGAGCGATC
CCTTCTAGCCGATCTCGACCGCTCCTCGGACGACGAGGGGGGCGACGGCG
GCGGCGACTGCGGACGGGGGGGGGTTAGGCGGAGCAAGAGAGACGGCGTC
ACGGCATCGCAGCCACCGGCCGGGGAGGGTGCCATCAGTTCGCGCTCGCG
TGAAGGCGTCGTCGTCGCAGCTCCGCCGGCGGGGAAACGAGAGTTGCCAC
TGTTGTTGAGAGTGGGCTACGCGGAGGGGGGACGACAGTTTGACGCCGGG
AGGGAGGCGACGACGACGAGCACCGCGTACCGATACAGACGCTTGGCCGG
CAAGAGCGGGAGGGGCTGGCCGCCGCGGGTGGACCCCGCGCGCCGAGAGG
AGTGGCTCTGCCCCATCGAGTTTGAGGCGGTGTTCGGGATGAGGTTCGCC
GAGTTTGAAGAGCTTCCCTCGTGGAAGCGGACTCTTCTGAAGCAAGAAGT
GCACCTGTTCTAGATGAACAAGGGAGAGTTCTTCGCGGAAGACGGTCCTC
CTTCCGCGGCCGCCCTCGCGCTGGAGAGGGAGAACCTCCTCCTCAGCGTG
TTCGGGCGTCAGGCCGGGGTGGCGGAGCTGGCGACGGTCGGACGGAGCAA
CTCTTGCCACGTCTTCCTGGAGGCGGCCAGCAGGGTCGCCGCCCTGCCGC
CGCTCGAGCGATCCCTTCTAGCCGATCTCGACCGCTCCTCGGACGACGAG
GGGGGCGACGGCGGCGGCGACTGCGGACGGGGGGGGGTTAGGCGGAGCAA
GAGAGACGGCGTCACGGCATCGCAGCCACCGGCCGGGGAGGGTGCCATCA
GTTCGCGCTCGCGTGAAGGCGTCGTCGTCGCAGCTCCGCCGGCGGGGAAA
CGAGAGTTGCCACTGTTGTTGAGAGTGGGCTACGCGGAGGGGGGACGACA
GTTTGACGCCGGGAGGGAGGCGACGACGACGAGCACCGCGTACCGATACA
GACGCTTGGCCGGCAAGAGCGGGAGGGGCTGGCCGCCGCGGGTGGACCCC
GCGCGCCGAGAGGAGTGGCTCTGCCCCATCGAGTTTGAGGCGGTGTTCGG
GATGAGGTTCGCCGAGTTTGAAGAGCTTCCCTCGTGGAAGCGGACTCTTC
TGAAGCAAGAAGTGCACCTGTTCTAG back to top
|