mRNA_L-elsbetiae_contig9246.18260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9246.18260.1
Unique NamemRNA_L-elsbetiae_contig9246.18260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: D8LFZ3_ECTSI (Hypothetcal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-17
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   13 VDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            VDFFNEVSLLYGIVADGAAQ+DRPGEGFPPGFEYLW
Sbjct:   64 VDFFNEVSLLYGIVADGAAQYDRPGEGFPPGFEYLW 99
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A835YWJ4_9STRA (Hypothetcal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.490e-15
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   13 VDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            VDFFNEVSLLYGIVAD A +F RPGEGFPPGFEYLW
Sbjct:   67 VDFFNEVSLLYGIVADDAERFSRPGEGFPPGFEYLW 102
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A836C980_9STRA (Hypothetcal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C980_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.180e-14
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   13 VDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            VDFFNEVSLLYGIVAD A +F RPGEGFPPGFEYLW
Sbjct:   66 VDFFNEVSLLYGIVADDAERFGRPGEGFPPGFEYLW 101
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A2R5GE45_9STRA (MOB kinase activator 1A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE45_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.080e-13
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+V D A QF +PGEGFPPGFEY W
Sbjct:   60 AANTVDFFNEISLLYGLVVDDAMQFTKPGEGFPPGFEYRW 99
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A2R5GF85_9STRA (MOB kinase activator 1A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GF85_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.210e-13
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+V D AAQF  PG GFPPGFEY W
Sbjct:   62 AANTVDFFNEISLLYGLVIDDAAQFQEPGSGFPPGFEYRW 101
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A7S2W3I1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3I1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.530e-12
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+VAD A ++ +PG+GFPPGFEY W
Sbjct:   56 AANTVDFFNEISLLYGLVADDAGKYTKPGDGFPPGFEYRW 95
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A2R5G772_9STRA (MOB kinase activator 1A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G772_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.640e-12
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+V D AAQ+ +PGEGFPP FEY W
Sbjct:   60 AANTVDFFNEISLLYGLVVDDAAQYTQPGEGFPPSFEYRW 99
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BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A2R5GGD2_9STRA (MOB kinase activator 1A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGD2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.160e-12
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+V D A +F +PGEGFPPGFEY W
Sbjct:   61 AANTVDFFNEISLLYGLVWDDAQRFTKPGEGFPPGFEYRW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A2R5GUT4_9STRA (MOB kinase activator-like 1A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUT4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.630e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW 120
            AA  VDFFNE+SLLYG+V+D AA++ + G+GFPPGFEY W
Sbjct:   57 AANTVDFFNEISLLYGLVSDDAAKYTKAGDGFPPGFEYRW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Match: A0A6V1P827_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P827_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 3.690e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   13 VDFFNEVSLLYGIVADGAAQ-FDRPGEGFPPGFEYLW 120
            VDFFNE SL+YG+VA+ A Q F RPGEGFPPGFEYLW
Sbjct:   60 VDFFNEASLIYGLVAEEAEQRFLRPGEGFPPGFEYLW 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9246.18260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LFZ3_ECTSI1.280e-1797.22Hypothetcal protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YWJ4_9STRA9.490e-1588.89Hypothetcal protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A836C980_9STRA1.180e-1488.89Hypothetcal protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A2R5GE45_9STRA3.080e-1375.00MOB kinase activator 1A n=1 Tax=Hondaea fermentalg... [more]
A0A2R5GF85_9STRA6.210e-1375.00MOB kinase activator 1A n=1 Tax=Hondaea fermentalg... [more]
A0A7S2W3I1_9STRA1.530e-1270.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5G772_9STRA1.640e-1272.50MOB kinase activator 1A n=1 Tax=Hondaea fermentalg... [more]
A0A2R5GGD2_9STRA3.160e-1272.50MOB kinase activator 1A n=1 Tax=Hondaea fermentalg... [more]
A0A2R5GUT4_9STRA1.630e-1167.50MOB kinase activator-like 1A n=1 Tax=Hondaea ferme... [more]
A0A6V1P827_HETAK3.690e-1178.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9246contigL-elsbetiae_contig9246:95..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D8LFZ3
KEGG koko:K06685
KEGG Pathwayko04111,ko04390,ko04391,ko04392,map04111,map04390,map04391,map04392
KEGG ModuleM00683
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.hippo signaling
EggNOG OGsKOG0440@1,KOG0440@2759
Ec32 ortholog descriptionMob1/phocein
Ec32 orthologEc-21_005190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816996.6262894-CDS-L-elsbetiae_contig9246:94..2141622816996.6262894-CDS-L-elsbetiae_contig9246:94..214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9246 95..214 -
1691683970.3092551-CDS-L-elsbetiae_contig9246:94..2141691683970.3092551-CDS-L-elsbetiae_contig9246:94..214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9246 95..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9246.18260.1prot_L-elsbetiae_contig9246.18260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9246 95..214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9246.18260.1

>prot_L-elsbetiae_contig9246.18260.1 ID=prot_L-elsbetiae_contig9246.18260.1|Name=mRNA_L-elsbetiae_contig9246.18260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
AAAAVDFFNEVSLLYGIVADGAAQFDRPGEGFPPGFEYLW
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mRNA from alignment at L-elsbetiae_contig9246:95..214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9246.18260.1 ID=mRNA_L-elsbetiae_contig9246.18260.1|Name=mRNA_L-elsbetiae_contig9246.18260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=120bp|location=Sequence derived from alignment at L-elsbetiae_contig9246:95..214- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCCGCAGCGGTGGACTTTTTCAATGAGGTGTCGTTGCTGTACGGCAT
CGTGGCGGACGGCGCCGCTCAGTTCGACCGGCCTGGGGAGGGGTTCCCCC
CGGGTTTCGAGTACCTCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9246:95..214-

>mRNA_L-elsbetiae_contig9246.18260.1 ID=mRNA_L-elsbetiae_contig9246.18260.1|Name=mRNA_L-elsbetiae_contig9246.18260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig9246:95..214- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCCGCAGCGGTGGACTTTTTCAATGAGGTGTCGTTGCTGTACGGCAT
CGTGGCGGACGGCGCCGCTCAGTTCGACCGGCCTGGGGAGGGGTTCCCCC
CGGGTTTCGAGTACCTCTGGGCTGCCGCAGCGGTGGACTTTTTCAATGAG
GTGTCGTTGCTGTACGGCATCGTGGCGGACGGCGCCGCTCAGTTCGACCG
GCCTGGGGAGGGGTTCCCCCCGGGTTTCGAGTACCTCTGG
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