|
Homology
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A6H5JEL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL4_9PHAE) HSP 1 Score: 423 bits (1088), Expect = 1.580e-141 Identity = 233/291 (80.07%), Postives = 251/291 (86.25%), Query Frame = 1
Query: 103 VAMIGSLAQGLVGVIVDEVAAQGGRQIQQQRDGVAPYXXXXXXXXXXXXXXX--------------QEFPPGPLASLVESATLLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGGATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
+AMIGSLAQGLVGVIVDEVAAQGGRQ+QQ XXXXXXXXXXXXXXX + PPGPLASLVES T+L NRA+AA GLQYLLLFEA+LLSAV+LYGALYWLVMPLRLHDKPIF DYS+RATTGGATGTVDFLA+HTQWDPSPLTNVERLNTKVL AGQHYKVGLEL+MPTSY NRRVGVFMVH TLLDE+DNELA SARPAMLPHTSALRKG GM+F+WPLH+ GLRRE ET+ VDC+D+YEENALHP TKARVTVSSGRVQFY SSI+ITPQ
Sbjct: 1 MAMIGSLAQGLVGVIVDEVAAQGGRQMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQHQLPPGPLASLVESMTMLVNRAVAAAVTGLQYLLLFEAVLLSAVILYGALYWLVMPLRLHDKPIFLDYSDRATTGGATGTVDFLARHTQWDPSPLTNVERLNTKVLNAGQHYKVGLELQMPTSYINRRVGVFMVHTTLLDEQDNELASSARPAMLPHTSALRKGVGMMFAWPLHLAGLRREEETIYVDCIDYYEENALHPLTKARVTVSSGRVQFYSSSINITPQ 291
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: D7G4V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V6_ECTSI) HSP 1 Score: 369 bits (946), Expect = 1.690e-125 Identity = 179/210 (85.24%), Postives = 195/210 (92.86%), Query Frame = 1
Query: 304 TLLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGGATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
T+L NRA+AA GLQYLLLFEA+LLSAVVLYGALYWLVMPLRLHDKPIF DYS+RATTG ATGTVDFLA+HTQWDPSPLTNVERLNTKVL+AGQHYKVGLEL+MPTSY NRR+GVFMVH TLLDE+DNELA SARPAMLPHTSALRKG GM+F+WPLH+ GLRRE ET+ VDC+D+YEENALHP TKARVTVSSGRVQFY SSI+ITPQ
Sbjct: 2 TMLVNRAIAAAVTGLQYLLLFEAVLLSAVVLYGALYWLVMPLRLHDKPIFLDYSDRATTGSATGTVDFLARHTQWDPSPLTNVERLNTKVLKAGQHYKVGLELQMPTSYINRRIGVFMVHTTLLDEQDNELASSARPAMLPHTSALRKGVGMMFAWPLHLAGLRREEETIYVDCIDYYEENALHPLTKARVTVSSGRVQFYSSSINITPQ 211
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: W7TBE7_9STRA (Bernardinelli-seip congenital lipodystrophy 2 protein variant 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBE7_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.200e-29 Identity = 80/218 (36.70%), Postives = 116/218 (53.21%), Query Frame = 1
Query: 346 LQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRA------TTGGATGT----------------VDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
LQYL L AL+ SA LY Y L+MP +LH+K +FFDY A T G + + +DFL+QH QW PSPLT E ++L+ + Y + +E+ +P S TN +G FM+ + L ++D+ LA SARP +L + S + L P+ LG +EA+ + V D + E+ HP ARV +SS R+ Y +S+ IT Q
Sbjct: 46 LQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLDPSTCPGLSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQ 263
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A8K1C7V7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7V7_PYTOL) HSP 1 Score: 120 bits (300), Expect = 1.680e-27 Identity = 74/207 (35.75%), Postives = 114/207 (55.07%), Query Frame = 1
Query: 349 QYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGGA-----------TGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPL-HVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
Q LL F LL++A +LY LY+L++P RLH++ IFFDY + A + T ++ L H QW+ SPL +E +T+VL G Y V +ELEMP S NR +G+FM+ TL + LA SAR A++ + +L + +FSW + + L + ++TV V V+ ++E HP T + ++ VQ Y + + I Q
Sbjct: 56 QVLLGFSVLLVTATILYSVLYYLIIPSRLHEQEIFFDYGDHAALSLSPAARTAAPTLPTAYLNLLKPHHQWEFSPLVEMEPTDTRVLVPGVKYDVFVELEMPESQVNRDIGMFMLQTTLKSHDGEFLASSARSAIVKDSHSLVELV-RVFSWLVPYALRVTEPSQTVRVLAVNGFKEGKQHPLTSVTLVLNHPAVQIYSARLTIIAQ 261
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A4D9D7J7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7J7_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.630e-26 Identity = 83/264 (31.44%), Postives = 119/264 (45.08%), Query Frame = 1
Query: 346 LQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDY------------SNRATTGGATGT--------------------------------------------------------VDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
LQYL L AL+ SA LY Y L+MP +LH+K +FFDY + + +GGA G+ VDFL+QH QW PSPLT E ++L+ + Y + +E+ +P S TN +G FM+ + L ++D+ LA SARP +L + S + L PL LG +EA+ + V D + E+ HP ARV +SS R+ Y +S+ IT Q
Sbjct: 46 LQYLFLGLALITSATALYTVAYQLIMPTKLHEKELFFDYFPPANPLGERLAARQEPSGGAPGSLWKGGLEDIGKTFSPAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPYPHAHVDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRLFRSLLLAPLLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQ 309
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A5D6YCZ6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCZ6_9STRA) HSP 1 Score: 108 bits (271), Expect = 9.980e-23 Identity = 79/224 (35.27%), Postives = 113/224 (50.45%), Query Frame = 1
Query: 301 ATLLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGG---------ATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSAL----RKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
A L ++ A V AG+ +L + +A VLY +Y+LV+P RLH++ IFFDY + A T T++ L QWD SPL + VL G Y V +EL +P S N +G+FMV TL E LA SARPA++ AL R GA M FS H LGL ++ + + ++ +E+ HP T V ++ +VQ Y + + I Q
Sbjct: 46 AGLKWSVRAAQVLAGVAFLFV------TATVLYSIVYYLVIPARLHEQEIFFDYGDHAALAKHGLPARFTLPTATLNLLDAEHQWDASPLVQLPTRAPPVLVPGVTYDVFIELTVPESRANVEIGMFMVSTTLKSFESEVLAASARPAIVHEAHALVRWLRVGA-MAFS---HALGLTEPSQLLHILAINGLQESKTHPLTTVVVRLNHPQVQVYAAKLTIIAQ 259
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: K3WY91_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY91_GLOUD) HSP 1 Score: 102 bits (254), Expect = 3.830e-21 Identity = 63/195 (32.31%), Postives = 99/195 (50.77%), Query Frame = 1
Query: 382 SAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGGA-----------TGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
+A +LY LY+LV+P RLH++ IFFDY N A+ T ++ L QW+ SP+ + +VL G Y + +EL +P S N +G+FMV TL + LA SAR A++ + +L + + LH LGL A+ + V ++ E+ HP T A +T++ +Q Y + + I Q
Sbjct: 66 TATILYSLLYYLVIPSRLHEQEIFFDYGNHASLVAEGSGLGHQLTLPTAKLNLLDPVHQWNASPVVKLPAHPQQVLVPGVKYDIYIELTVPESRVNADIGMFMVSTTLKSTDGQYLASSARSAIVHDSHSLVRWIRVGALAVLHALGLTEPAQVLDVLAINGIMESKTHPLTTAEITLNHPAIQIYSAKLTIIAQ 260
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A2P4Y5K1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5K1_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.600e-19 Identity = 68/216 (31.48%), Postives = 107/216 (49.54%), Query Frame = 1
Query: 307 LLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNR-------ATTGGATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
LL+ A +FAG+ +L +A VLYG LY++V+P R H++ IFF+Y +R A T T++ L QW S + VL G Y V +EL +P S N VGVFMV +L + + +LA SARP L + + F + LG A+T+ V ++ Y E+ +P T+ V +++ ++Q Y + + + Q
Sbjct: 47 LLWVFRAAQIFAGISFLFA------TAFVLYGLLYYVVIPSRFHEQEIFFNYGHRHGDITQPAHMYVPTATLNLLDPVHQWQ-SMIPQPHETTQSVLVPGVKYDVIVELTVPESRANAEVGVFMVSTSLFEGDKRQLATSARPVTLHDMPTPVRWLRLGFWLIPYTLGFTEPAQTLRVTAINGYMEDTEYPLTRVDVELNTPKLQVYSAKLTVIAQ 255
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A2D4BPB8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPB8_PYTIN) HSP 1 Score: 95.9 bits (237), Expect = 1.040e-18 Identity = 63/200 (31.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query: 367 EALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNRATTGGA----------TGTVDFLAQHTQWDPSPLTNVERLNT-KVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQFYGSSIHITPQ 933
L +A VLY ALY+++MP RLH++ +FFDY A + T +D L QW S L R VL Y V +EL +P S TNR +G+FM++ TL ++ LA SARP ++ + + A L + L + +T+ V + + E+ HP T VT++ +Q Y + + I Q
Sbjct: 57 SVLFATATVLYSALYYVIMPSRLHEQQVFFDYGTHAALSLSDPRAFPLTLPTARLDLLNAEQQWTASALAYPSRSTAASVLVPDVTYDVIVELTVPESATNRAIGMFMMNTTLSTHDERVLAASARPVIVKDSHLAVQWARALAWLVPYALRVTEPTQTLSVLVIXGFRESKEHPLTGVTVTLNHPAIQIYDAKLTIIAQ 256
BLAST of mRNA_L-elsbetiae_contig924.18259.1 vs. uniprot
Match: A0A2P4XXP5_9STRA (Membrane protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXP5_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.210e-18 Identity = 67/205 (32.68%), Postives = 102/205 (49.76%), Query Frame = 1
Query: 307 LLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPIFFDYSNR-------ATTGGATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKVGLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKGAGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQ 900
LL+ A VFAG+ +L +A VLYG LY++V+P R H++ IFF+Y +R A T T++ L QW S + VL G Y V +EL +P S N VGVFMV +L + + +LA SARP L + + F + LG A+T+ V ++ Y E+ +P T+ V +++ ++Q
Sbjct: 47 LLWVFRAAQVFAGISFLFA------TAFVLYGLLYYVVIPSRFHEQEIFFNYGHRHRDITQPAHMYVPTATLNLLDPVHQWQ-SMIPQPHETTQSVLVPGVKYDVIVELTVPESRANAEVGVFMVSTSLFEGDKRQLATSARPVTLHDMPTPVRWLRLGFWLIPYTLGFTEPAQTLRVTAINGYMEDTEYPLTRVDVELNTPKLQ 244
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 367.9 |
Seed ortholog evalue | 4.8e-99 |
Seed eggNOG ortholog | 2880.D7G4V6 |
Preferred name | BSCL2 |
KEGG ko | ko:K02880,ko:K19365 |
KEGG Pathway | ko03010,map03010 |
KEGG Module | M00177 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000003,GO:0001558,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006638,GO:0006639,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008361,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009605,GO:0009791,GO:0009846,GO:0009856,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010154,GO:0010162,GO:0010344,GO:0010431,GO:0010720,GO:0010769,GO:0010770,GO:0010876,GO:0010883,GO:0010884,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0019216,GO:0019222,GO:0019395,GO:0019637,GO:0019725,GO:0019752,GO:0019915,GO:0021700,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022611,GO:0030003,GO:0030154,GO:0030176,GO:0030258,GO:0030307,GO:0030516,GO:0031224,GO:0031227,GO:0031323,GO:0031344,GO:0031346,GO:0031667,GO:0031984,GO:0032101,GO:0032103,GO:0032469,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032787,GO:0032879,GO:0033036,GO:0034389,GO:0034440,GO:0040008,GO:0042175,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043900,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045444,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045833,GO:0045927,GO:0046339,GO:0046395,GO:0046473,GO:0046486,GO:0046890,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048679,GO:0048680,GO:0048686,GO:0048687,GO:0048690,GO:0048691,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051704,GO:0051960,GO:0051962,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055114,GO:0060284,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0070570,GO:0070572,GO:0070925,GO:0071695,GO:0071704,GO:0071840,GO:0072329,GO:0072503,GO:0072507,GO:0080090,GO:0080134,GO:0080135,GO:0080154,GO:0080155,GO:0090066,GO:0090207,GO:0098771,GO:0098827,GO:0120035,GO:0140042,GO:1901575,GO:1901576,GO:1903034,GO:1903036,GO:1905952,GO:1905954,GO:2000026,GO:2000241 |
EggNOG free text desc. | lipid storage |
EggNOG OGs | KOG4200@1,KOG4200@2759 |
Ec32 ortholog description | Adipose-regulatory protein, Seipin |
Ec32 ortholog | Ec-20_000180.1 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Exons | 6 |
Model size | 933 |
Cds size | 933 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816996.5289435-CDS-L-elsbetiae_contig924:24533..24875 | 1622816996.5289435-CDS-L-elsbetiae_contig924:24533..24875 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 24534..24875 + |
1691683970.2253017-CDS-L-elsbetiae_contig924:24533..24875 | 1691683970.2253017-CDS-L-elsbetiae_contig924:24533..24875 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 24534..24875 + |
1622816996.5425448-CDS-L-elsbetiae_contig924:25570..25708 | 1622816996.5425448-CDS-L-elsbetiae_contig924:25570..25708 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 25571..25708 + |
1691683970.2454894-CDS-L-elsbetiae_contig924:25570..25708 | 1691683970.2454894-CDS-L-elsbetiae_contig924:25570..25708 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 25571..25708 + |
1622816996.555708-CDS-L-elsbetiae_contig924:28941..29030 | 1622816996.555708-CDS-L-elsbetiae_contig924:28941..29030 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 28942..29030 + |
1691683970.254538-CDS-L-elsbetiae_contig924:28941..29030 | 1691683970.254538-CDS-L-elsbetiae_contig924:28941..29030 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 28942..29030 + |
1622816996.5689387-CDS-L-elsbetiae_contig924:29319..29407 | 1622816996.5689387-CDS-L-elsbetiae_contig924:29319..29407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 29320..29407 + |
1691683970.2688634-CDS-L-elsbetiae_contig924:29319..29407 | 1691683970.2688634-CDS-L-elsbetiae_contig924:29319..29407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 29320..29407 + |
1622816996.582172-CDS-L-elsbetiae_contig924:30105..30288 | 1622816996.582172-CDS-L-elsbetiae_contig924:30105..30288 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 30106..30288 + |
1691683970.2776806-CDS-L-elsbetiae_contig924:30105..30288 | 1691683970.2776806-CDS-L-elsbetiae_contig924:30105..30288 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 30106..30288 + |
1622816996.593685-CDS-L-elsbetiae_contig924:30799..30892 | 1622816996.593685-CDS-L-elsbetiae_contig924:30799..30892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 30800..30892 + |
1691683970.288542-CDS-L-elsbetiae_contig924:30799..30892 | 1691683970.288542-CDS-L-elsbetiae_contig924:30799..30892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig924 30800..30892 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig924.18259.1 >prot_L-elsbetiae_contig924.18259.1 ID=prot_L-elsbetiae_contig924.18259.1|Name=mRNA_L-elsbetiae_contig924.18259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
CSSPLRHVCLSVFTCGKSCRDFEGGSDGGSGHRPVAMIGSLAQGLVGVIV DEVAAQGGRQIQQQRDGVAPYHHQQQQQRPQRRQSQQEFPPGPLASLVES ATLLFNRAMAAVFAGLQYLLLFEALLLSAVVLYGALYWLVMPLRLHDKPI FFDYSNRATTGGATGTVDFLAQHTQWDPSPLTNVERLNTKVLQAGQHYKV GLELEMPTSYTNRRVGVFMVHMTLLDEEDNELARSARPAMLPHTSALRKG AGMLFSWPLHVLGLRREAETVLVDCVDFYEENALHPFTKARVTVSSGRVQ FYGSSIHITPQ back to topmRNA from alignment at L-elsbetiae_contig924:24534..30892+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig924.18259.1 ID=mRNA_L-elsbetiae_contig924.18259.1|Name=mRNA_L-elsbetiae_contig924.18259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6359bp|location=Sequence derived from alignment at L-elsbetiae_contig924:24534..30892+ (Laminarionema elsbetiae ELsaHSoW15) TGCAGTTCCCCGTTGCGTCACGTCTGTCTCTCTGTCTTCACTTGTGGCAA
GTCTTGCCGCGACTTCGAGGGCGGCAGCGACGGCGGGAGCGGCCACCGTC
CTGTAGCGATGATTGGTTCTCTGGCCCAGGGTTTGGTGGGCGTGATCGTC
GACGAGGTCGCCGCGCAGGGAGGCCGTCAGATACAGCAGCAGAGAGACGG
GGTTGCACCGTACCACCACCAGCAGCAGCAGCAGCGGCCGCAACGCCGGC
AATCCCAGCAGGAGTTCCCGCCGGGGCCGCTGGCGAGCCTGGTTGAATCC
GCGACGCTGCTTTTCAACCGAGCCATGGCTGCGGTTTTCGCGGTGAGCGA
ATGAACCCCCCCTGTGTTGTGTTGCGGCGCTTGTTCGATTAGGCCGTGTT
GTTGCGGTCCGATGAAGTTGCGGCGGGAATGCCTTCGCTCGTCGCAGGAA
CCATGAACCATGAAACTTTAAAAAGGCAAGCCGCCGGAGATGTCCTGTGC
TCGAGGGCGCCCACTGCGGGATGGGTGTTGATTGTAGGAACTGAGTCAAC
CCAGGAACTGATGGGCGTAGTCATCATATTGTTGCCTCCGCGGAGTGAGA
ATGCGCGGACCTTCTTCCTCTCAGGGGACACTCGTACCCCCCGCCTCCTA
CACACTAACCCCCGGGGGGACACACAAACTGGACTCCTATCCAAAGCACC
ACGAACATCGAGCACCGCAGCAAAGCACGAAGATTCATTTTTTCCTTCAA
ATCGCTGGCTATTTTGTGCTTCGAACCGGGGGCCTTCTCTCCTTTCTTCG
AGACCATGCTGCCATCCTCTTCGAGACCGCTCGTTGCTACATAGATATAC
CGCTGAGTCTCAGGGCATCCGTAGCTTCGGATCTGCTGATGGAGGGGGTG
CCGTTCATGTCGAGCTTCTGAAAGCCGTGCGCTCACGTTATATACCCACC
CTTACAAAGGCCGCCAGCGCTTTTGCTGCTATTGAGTTTTGTCCACCCTT
ACCCCCGGTGTAAACCTTCCCGCCCCCCCTCCAACAGGGGCTGCAGTACC
TGCTGCTCTTCGAGGCCCTGCTGTTGTCGGCGGTGGTGCTGTACGGGGCG
CTGTACTGGCTGGTGATGCCGTTACGCCTGCACGATAAACCCATCTTCTT
CGATTACTCCAACAGAGCAACGACGGTGAGAGTGTTTTTTTTTGTTGCTG
TACAAAACGTGAGCAGTTTGCGTCCCAGCCCGTGGAAAAACCTTTCCGGG
GGGACTGCTGGTGTACTCGATACATCAGCCCTCCCTCGCCCGCCCGCCCA
GGCTACAACGGTACAAAATCTGTTTATGTTTTGGGGAAGGGTTGTTTATC
TGGGGGTACATATATATGCTTTCTAACGTCTCGTTTGTTTGCGACCGTTT
CTGGTGCGTCGCTTTCCCCTCCATCTTCCGCCCCTATGGCGCGTTTTCGT
TGGCAGTTGTCTCGGTTGAGCTGTCGCAGAGAGGGCACCGTTTGTCTGCC
CCACCCGCGGGGCTTATATTACTTCGAAGTGCCGTAATTGTCTCTGAGGG
CCTGGCCTGTCTTATCAGTTTTCAGAAATCAAAAATCAAAATCAAAATCA
AAAACAGATTTCCCCAAATATTTGTGTTTCGGTCTTATCGAACAACGTGG
ATATTCAAAATCAATAATAAGCCGAGAAACCTCCGGGTTGAAGCGAGGCA
GGATCAAAGTCATGTGGCCGACACAAGGTCGTCTACGCGTGCACGAAATA
ATGCGGGAAAGCACCTGTGAGAATCAAGGGAGCTCATAGTCCAAACCGCA
GTCGCAGAGATGCACCGAAACGCAAGTTTTGCCCAAATGTACGTCTCAAC
GGCCGTTGAGATGCAAGGCAGAATAAAGTTAGAATGTGTTTCGCCAGAGA
CGCGACGTGAGCTCTAGTCTTTCGCGTTCGCACTCCATATGTATGAGATC
TTCGAAAGCCTCCCTGTTGCATCAGTTTCGCACCCGTGAAAGACTCAGCG
TCGCACTCGCTGGGAGCCTTCGCCCCACGGGACAACAAACGGCAAACAGC
AAACAGCGCCGCTAGAGCCGATGGGAGATGCACGACGGGGATGACCAGCA
AGCAAGGACGGCACAATAGGCTTCCAGCACACAACACCATCCCTTGGGAG
AAGCGGTGCTGCTGGTCCAAGCCGTATTCCATAGGATGCCCTACAGCAGC
AGTGATGACGGTGTGCAGGGTTGTAATCTCAACCGAATCTCAACTGCAAT
TCGGAAAAGATAAAAATGGCCACCGGGCAAGTCTACCCCTCTCGATTTTT
GCGTCCGCACTCTTTGTATCTGCCCTTCCCAAAACTATCGTTCAGAGGTG
ATGACAGCAGCAGCCGCAAGCTCCATACACATCCGATGCCCAATGAATGC
TGCAGGCTGTTTGCAGCTTTGGCGCTTCACATATTAAAAACAGATAATCA
AACATCACGAAAGAAGCCCCCCATCATTTCTCGGCAATCGACAAATTTTT
CGGAAAATCAAAATTCACGGTGGGCAGCATTTCCTGCTTCGACTAATCAG
GCCATTTCTTACGCTGTGATGTTTTCAGATAATTATTTCTGCTTTTCTCA
CTGGGCAGATTTTTCCACTGAAATACTATTCAGGATCCAGCTATTTTGTT
TTCGTCGGGCAAAAAGGGCGATTCTACATCACAGGATGAATCAGTTCACG
CCTTCGACTCGTATGCGGCCAATAACGCGCAGATAATTCTTTTTTTGGGA
CGCGTGCATAGGCCATGTGCATGACCCCACGCCATTGACCGATGTTCGTG
GATGGTATGGGCTTAGAGCTCCCTCTGGCATACGATCTGGCATACGATTT
TGACTGGTCTCCCTTGGAGCAACCATAAAACAAAGCGAACGTTCAAAAAA
GGCAAAGTCCAAACGCACTTCGATTCATGTTCACGGGCGATGTACACTCG
GTTCTGGGCCGCGTGCCCTGATTTTGGGACGCCTGCAGAAGCCCTGTGTA
TGAACCCACGCCATGGGCAGCAGTTTGTGGATGTTGCCGGCCTAAGGCCT
CTCTTTTGGCATGCGTGTTTTGCTTGACGCACACGCAGCATGAACAAAAA
AATGCAAACGTTCAAAAAAGGCAAAGTCCAAACGCACTTCGATTCATGTT
CACGGGCGGTGTACACTCAGTTCTGGGCCGCGTGCCATGATTCGGGACGC
CTGCACAGGCCTTGTGTATGAACCCACGCCATGGGCAGCAGTTTGTGGAA
GTTGCCGGCCTAAGGCCTCTCTTTTGGCATGCGTTTTTTGCTTGACATAC
ACGCAGCAGGCAAAAACCGGCTCTTTTGACACCCAAACGGAGATTGTGGG
AAGTGCAACGTTTGCAGGTCGACGTTTTAGCTCGTGCGTGGTCAACAAAG
CGCTGAACACCCTGGATTTTGGATGCCTGCAGAGGATTTGTGTATGACCC
CCCCGTAGTGACCTCTGTTTGGGCAGCAGTTGATGCAGTTGCTCGTTCTG
GCACGATCACCTGTGTGATCGGGTGTGACCCCCCCCAGTTCCTATAGCCA
AAAAATCATCTGATCCCAGTGAATAAATTGACCCATTTTCTCACTCGGCG
ACTGGAATGCTGGATTAATTTTGGGCTATAGGGTCTGGGCTGTAGGAATT
TGCCAAATTCCTACAGCGTAAGAAGCCCACCTATTGTTTTCTTTAGGAAA
ATGACCCCCCCCCCCCAATATTTGTTAGAAAACATCACATCGTAAGAAAT
TGCCTCAGAGCCCAATTTTGAATTTTGATTTTTGGAAAACCGATATTCCG
GCCCTGAGTTGCCTCCGATTTGTGAACATTTTTCAAAGGGTTTGTTTGCT
CCGCAATGGATGGGTTGCTGCTGTCGAGCGATGCGCCCCTTGGAAGGATC
TCGTCGACATCTTCCAAACTAAACATTTTTAACGTACATTCTCCCGATTG
TGGAAATAATCAGCTTTGATTACACCCCGGGGGGAACTCAAAGAGACGAT
TACGGTATCTACCATGCTAGAGATGACTTGAGACAAGGTAGCCCTTTTGC
TCGACCGGTCAACTGGTCAAGCAGAGGTAAGACCGGAAGGGATGTGTTGT
GTCTCACGAAGGGTCGGGTCAAGGTCAGCTTGGGCCGGCCTGGTACCTTT
CTGTCCCGGATAACAGCGCGGATGCGACGCCACAAACCTAGCACTATTTT
GGTTGGGATGGTTCCAATGGATTCTGTTGTTTTCGGCGGGCTAGACTTTA
CATTGAACTTTCCTTCGTGCCTTCATCGATGCAGCCCGTTCGAACAGTGA
CTTCAACGCCTCTGCTAAACCGGTGTCCAACTGCTGTCGTGTATGCCTTG
ATGCCGATGACACCTTTTTTTTGTCGCCTTTTGCTGCCTTTTGCCGCCGG
TACAATAGGGGGGCGCGACCGGCACCGTGGACTTTCTGGCGCAGCACACA
CAGTGGGACCCTTCTCCGCTCACAAACGTTGAACGCCTCAACACAAAGTG
AGTAAGCATACAATAGCAGCCCGCCGGGTAGAGGGGAAGGAGGAGGGATT
CATGTGTTGTGCTGGTTTGCTTGTGTTACGTTTTTGGCGAACGCAGACAG
AACGCACCTAAAAACATACAGAAACAAGCATCGTGTGCACGCAGAGGACG
ACGGGGGTCAACGTCAGATCAGCTGCAGAACACCCGTTTTATTTTGACTG
TACGTACGCGCGTGCGGTGGGTATTGACCGAAATGTCGATCGCCGTGGCG
CCCTGGAACGTCGTTCGTGCTGGTGCTGCCCCTCAGGGTGCTCCAGGCCG
GCCAGCACTACAAAGTGGGTCTAGAGCTGGAGATGCCAACTTCGTACACC
AACAGGAGGGTAGGGGTGTTCATGGTGAGAGACCAAAGGTTGACGCGCAC
AAGTGTGCACCTCTAAAGAACCTTACCCTGCGTCTTGAGGCCGGAGGGGG
AGTGTGGCGCTCTTGCCGAAAAGCTGGTTGCCGTCATGGTGTGCACGGCA
GCCTCCTCTCCGGACAGACGCTCCAAAGCTCGATCGCTCAGCACCCAAGG
GAAAAGAGAAGCGGCAATGCTCGAAACGGTCGCGGCCTTCAATGGCCTCG
TCGAGGCATCCGCTCCTTTTTCGAAGATATGCCTGTGGAGTATAGTCTAT
CTATTTGCTTTGCCGAGGGGCAACGCAACCGAGAATAGAGCTTTGAGATG
CGGACAAGCAGGAAGCGAGCACCCCGTGGGGTGGCGGGACCCCTATTTTT
GGGCCCAGCGGGCCCATCCTTGCGCGACGTCCTGCATACAGTAGTGGCAC
GGGACGCTGGTTGTTTTGCACTACATACTGCTGTGTAGGACGTCGCCGGA
GAAAACAAACAACAGACGGATCAGGCATCCACCCCCGCTCACCGCAGGAG
GGGGTCCACCTCCCCCCCTCCTATGGGACCCCGGTTGGGTCGTCTAGCTA
GTCGTAGTGGAGGAGTATGGGGGCAAGTGGGGCGGACGACGAATATGCCA
AGTATGGGAGGGGGAAAAAAAACTTCCACCTTCCTCTGTTCCTCGTCCCC
GTCCCTCTGCGGCCGATGGCAGGTGCACATGACCCTGCTAGACGAAGAGG
ACAACGAGCTGGCGAGATCGGCCCGCCCGGCCATGCTCCCACACACCTCG
GCCCTCCGGAAGGGCGCGGGCATGCTCTTCTCGTGGCCGCTGCACGTCCT
CGGCCTGCGGCGGGAGGCGGAGACGGTGCTCGTGGACTGCGTGGACTTTT
ACGAGGTCTGGCTTGTGCTGGTTTGGTTTGGTTTGCTGACGTTCGTGGCC
GCGTTTGGGGCTGCTTTTGGTGGGCATCAGAGCGAGCTTACCCAAGGAAT
GGGTGTGAAAGATTGACGTTTCGTCTCACGCAAGACAAGGCTGTCAGGGC
GAAATGAGAGCGTTAATTACGCCGTGGCGAAAAAAGAGAGTTTCTGATTG
ATCGCGGTGCGCTTAGACTGCGAAACATAGGCTTGCACGAGGAGGGGTTG
TGGCTTGACGAGGTTGTTGCGGGTTTCGTTTGGCACGCTTGCGGGTGGTT
GTGCCATGCCAAACCGATTCGTTGTACAGCTTCTTGCACACGCGCGAGCG
GCTCTTCCCTCGTGCGTTTGCTCTCCGAGTTTTTTTGTGGGTACAATGTA
TGCTCTGCGCCTCGGCCAATCATCAGAGTAGGTGCTCGCGCTTCCCTTTC
TCACTCCTTGATTCTGCCATCGCACCCCCCCCCCCTCTCTATCTCTCTTT
CTCCCTCTCCTGCCAGGAGAACGCGCTGCACCCTTTCACGAAGGCTAGGG
TCACCGTTTCCAGCGGCCGCGTGCAGTTCTACGGGTCCTCGATCCACATC
ACTCCGCAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig924:24534..30892+ >mRNA_L-elsbetiae_contig924.18259.1 ID=mRNA_L-elsbetiae_contig924.18259.1|Name=mRNA_L-elsbetiae_contig924.18259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig924:24534..30892+ (Laminarionema elsbetiae ELsaHSoW15) TGCAGTTCCCCGTTGCGTCACGTCTGTCTCTCTGTCTTCACTTGTGGCAA GTCTTGCCGCGACTTCGAGGGCGGCAGCGACGGCGGGAGCGGCCACCGTC CTGTAGCGATGATTGGTTCTCTGGCCCAGGGTTTGGTGGGCGTGATCGTC GACGAGGTCGCCGCGCAGGGAGGCCGTCAGATACAGCAGCAGAGAGACGG GGTTGCACCGTACCACCACCAGCAGCAGCAGCAGCGGCCGCAACGCCGGC AATCCCAGCAGGAGTTCCCGCCGGGGCCGCTGGCGAGCCTGGTTGAATCC GCGACGCTGCTTTTCAACCGAGCCATGGCTGCGGTTTTCGCGTGCAGTTC CCCGTTGCGTCACGTCTGTCTCTCTGTCTTCACTTGTGGCAAGTCTTGCC GCGACTTCGAGGGCGGCAGCGACGGCGGGAGCGGCCACCGTCCTGTAGCG ATGATTGGTTCTCTGGCCCAGGGTTTGGTGGGCGTGATCGTCGACGAGGT CGCCGCGCAGGGAGGCCGTCAGATACAGCAGCAGAGAGACGGGGTTGCAC CGTACCACCACCAGCAGCAGCAGCAGCGGCCGCAACGCCGGCAATCCCAG CAGGAGTTCCCGCCGGGGCCGCTGGCGAGCCTGGTTGAATCCGCGACGCT GCTTTTCAACCGAGCCATGGCTGCGGTTTTCGCGGGGCTGCAGTACCTGC TGCTCTTCGAGGCCCTGCTGTTGTCGGCGGTGGTGCTGTACGGGGCGCTG TACTGGCTGGTGATGCCGTTACGCCTGCACGATAAACCCATCTTCTTCGA TTACTCCAACAGAGCAACGACGGGGCTGCAGTACCTGCTGCTCTTCGAGG CCCTGCTGTTGTCGGCGGTGGTGCTGTACGGGGCGCTGTACTGGCTGGTG ATGCCGTTACGCCTGCACGATAAACCCATCTTCTTCGATTACTCCAACAG AGCAACGACGGGGGGCGCGACCGGCACCGTGGACTTTCTGGCGCAGCACA CACAGTGGGACCCTTCTCCGCTCACAAACGTTGAACGCCTCAACACAAAG GGGGCGCGACCGGCACCGTGGACTTTCTGGCGCAGCACACACAGTGGGAC CCTTCTCCGCTCACAAACGTTGAACGCCTCAACACAAAGGTGCTCCAGGC CGGCCAGCACTACAAAGTGGGTCTAGAGCTGGAGATGCCAACTTCGTACA CCAACAGGAGGGTAGGGGTGTTCATGGGTGCTCCAGGCCGGCCAGCACTA CAAAGTGGGTCTAGAGCTGGAGATGCCAACTTCGTACACCAACAGGAGGG TAGGGGTGTTCATGGTGCACATGACCCTGCTAGACGAAGAGGACAACGAG CTGGCGAGATCGGCCCGCCCGGCCATGCTCCCACACACCTCGGCCCTCCG GAAGGGCGCGGGCATGCTCTTCTCGTGGCCGCTGCACGTCCTCGGCCTGC GGCGGGAGGCGGAGACGGTGCTCGTGGACTGCGTGGACTTTTACGAGGTG CACATGACCCTGCTAGACGAAGAGGACAACGAGCTGGCGAGATCGGCCCG CCCGGCCATGCTCCCACACACCTCGGCCCTCCGGAAGGGCGCGGGCATGC TCTTCTCGTGGCCGCTGCACGTCCTCGGCCTGCGGCGGGAGGCGGAGACG GTGCTCGTGGACTGCGTGGACTTTTACGAGGAGAACGCGCTGCACCCTTT CACGAAGGCTAGGGTCACCGTTTCCAGCGGCCGCGTGCAGTTCTACGGGT CCTCGATCCACATCACTCCGCAGGAGAACGCGCTGCACCCTTTCACGAAG GCTAGGGTCACCGTTTCCAGCGGCCGCGTGCAGTTCTACGGGTCCTCGAT CCACATCACTCCGCAG back to top
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