prot_L-elsbetiae_contig9236.18255.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9236.18255.1
Unique Nameprot_L-elsbetiae_contig9236.18255.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length533
Homology
BLAST of mRNA_L-elsbetiae_contig9236.18255.1 vs. uniprot
Match: A0A6H5KM13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM13_9PHAE)

HSP 1 Score: 440 bits (1131), Expect = 3.330e-144
Identity = 329/706 (46.60%), Postives = 379/706 (53.68%), Query Frame = 0
Query:    1 MLSCTSLDTTAAGSSRLPPGERLSPAPSAVRQKPVVDGVIVAAPKSSSEHEDGDIGSSRRKQRARGQGGDSSLRPKSLDDGGKRPLGDERGGTEGKAA--TAAAPGDERRGRRTGQPDSDGGRDRLS--KNDAVTT---------------------------GMSLLRPYVIDLKEEVSHAHPQILHLGETIHLFQPPEVPGRSWEEMEAVTWAIEQTPDGQVSVKYRVDPRGDRDMAEGCPLLKKISGKKYVPVGLHLGRFIE-----------------GEALAE--ACEDRGAQA-------------------------------------------------------------------------------------VLAIVLSPGEVEVVRRPGLKALARLASENHQTLLAIGR-------------------------AGGIEATIALLRELGECRDVQENACWLLALLSQVAEFSRRIGREGGCEEVCKVLRCCSEFGGACPQIQSWALGCLANLLACRENRRRLLGPGLEGGGPAGGREAAEAETRP-GEWGHHNQR---EDK--QQPE----GARTNRRQREKEGGLEERGRGAA-VAGXXXXXXXXXXXXAG---WIHTVLANSERVAGDRDAQYSGIACVRELAAAGPVPARAMRLTGVPGLVGAALER---FGGTDPQLREQARTALRSLS 529
            MLSC  LDT  AG SRL PG    P+ SAV  K    G  V+A ++S    D +IGS   +++ + +G   +   K+ D G K+P  D   G E +AA  T+A  G ERR          GG DR S   N++VTT                           G +LLRPYVIDLK E+SHAHPQIL LGETIHLFQPP  PG SWEEMEAV W IEQ PDGQVS+KYRVDPRGDRDM EGCPLLKKI G+KYVPVGLHLGR+ E                 GE LA     ++R A+A                                                                                     VLAIV S  EVEVVRRPGLKALARLAS+N QTLL IGR                         AGGIEA+I++LRELG+CRDVQEN CWLLALLSQVAEFSR IG EGGCEEVCKVL+ C++FGGACP+ QSWALGCLANLL CR NRRRLLG G   G   G    +E E RP G+   H +    ED   QQ E    G   N R   +  G  E  RGA+ V               G   WIHTVLANS+RVA DR AQYSGIACVRE+AAAG  PAR M+ +GVPGL+GA +E+   FG TD +LR+QA +ALR +S
Sbjct:    1 MLSCAILDTVVAGMSRLRPG---CPSTSAVGNKGDGGGTDVSASEASPVA-DSNIGSIAEEKKCKARG---NAPKKNSDMGEKKPPRDRWTGYEAQAAAKTSAEAGAERRDL--------GGHDRGSCHDNNSVTTTNSIGNTTHXXXXXXXXXXKNEKAGPTGENLLRPYVIDLKAEISHAHPQILRLGETIHLFQPPGAPGGSWEEMEAVAWLIEQNPDGQVSIKYRVDPRGDRDMVEGCPLLKKIGGRKYVPVGLHLGRYSEKEWTHHGLLLLSGMHQMGEWLAHERVKKERTAEARIGGVKTSYRKLMQERTKAHLSDVVAEATVRSKPHANSGDGGGASSSKLVKLSPEVDDSIVFNLVAERRVLSAQKLSKQLYYVAAVLAIVTSSREVEVVRRPGLKALARLASDNRQTLLEIGRPHFSFTPLPCLASLSLRRFLGQKGRAGGIEASISMLRELGQCRDVQENGCWLLALLSQVAEFSRIIGHEGGCEEVCKVLKSCAKFGGACPRTQSWALGCLANLLGCRANRRRLLGVGRGWG--EGATAMSEEEERPAGDRKPHQEECGEEDGILQQGEYKHLGEERNSRTSGERKGEREGSRGASWVQSGDNGCNDRTASGLGLPHWIHTVLANSDRVACDRGAQYSGIACVREIAAAGRAPARVMKSSGVPGLIGATIEKCATFGATDQRLRDQANSALRLMS 689          
BLAST of mRNA_L-elsbetiae_contig9236.18255.1 vs. uniprot
Match: D7FV17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV17_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 4.900e-119
Identity = 225/360 (62.50%), Postives = 250/360 (69.44%), Query Frame = 0
Query:    1 MLSCTSLDTTAAGSSRLPPGERLSPAPSAVRQKPVVDGVIVAAPKSSSEHEDGDIGSSRRKQRARGQGGDSSLRPKSLDDGGKRPLGDERGGTEGKAA--TAAAPGDERRGRRTGQPDSDGGRDRLS--KNDAVTT---------------------------GMSLLRPYVIDLKEEVSHAHPQILHLGETIHLFQPPEVPGRSWEEMEAVTWAIEQTPDGQVSVKYRVDPRGDRDMAEGCPLLKKISGKKYVPVGLHLGRFIEGEALAEACEDRGAQAVLAIVLSPGEVEVVRRPGLKALARLASENHQTLLAIGRAGGIEATIALLRELGECRDVQENACWLLALLSQVAEFSRRIG 329
            MLSC  LDT  AG SRL PG    P+ SAV  K V  G  V+A ++S    D +IGS  +++R R +G   +   K+ D GGK+P  D   G E +AA  T+A  G ERR          GG DR S   N++VTT                           G +LLRPYVIDLK E+SHAHPQIL LGETIHLFQPP+ PG SWEEMEAV W IEQ PDGQVSVKYRVDPRGDRDM EGCPLLKKI G+KYVPVGLHLGR+ EGEALAEACE RG QAVLAIV S GEVEVVRRPGLKALARLAS+N QTLL IGRAGGIEA+I++LRELG CRDVQENACWLLALLSQVAEFSR  G
Sbjct:    1 MLSCAILDTVVAGMSRLRPG---FPSTSAVGNKGVGGGNDVSASEASPVA-DSNIGSIAQEKRGRVRG---NTPKKNGDMGGKQPPRDGWTGYEAQAAAKTSAETGAERRDL--------GGHDRGSFHDNNSVTTTNSIGNTTHXXXXXXXXXXKNEKAGPTGENLLRPYVIDLKAEISHAHPQILRLGETIHLFQPPDAPGGSWEEMEAVAWLIEQNPDGQVSVKYRVDPRGDRDMVEGCPLLKKIGGRKYVPVGLHLGRYSEGEALAEACEGRGVQAVLAIVTSSGEVEVVRRPGLKALARLASDNRQTLLEIGRAGGIEASISMLRELGRCRDVQENACWLLALLSQVAEFSRMFG 345          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9236.18255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM13_9PHAE3.330e-14446.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV17_ECTSI4.900e-11962.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 229..384
e-value: 6.5E-16
score: 60.1
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 289..333
score: 9.117
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 242..378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9236contigL-elsbetiae_contig9236:1813..6912 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9236.18255.1mRNA_L-elsbetiae_contig9236.18255.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9236 1813..6990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9236.18255.1 ID=prot_L-elsbetiae_contig9236.18255.1|Name=mRNA_L-elsbetiae_contig9236.18255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=533bp
MLSCTSLDTTAAGSSRLPPGERLSPAPSAVRQKPVVDGVIVAAPKSSSEH
EDGDIGSSRRKQRARGQGGDSSLRPKSLDDGGKRPLGDERGGTEGKAATA
AAPGDERRGRRTGQPDSDGGRDRLSKNDAVTTGMSLLRPYVIDLKEEVSH
AHPQILHLGETIHLFQPPEVPGRSWEEMEAVTWAIEQTPDGQVSVKYRVD
PRGDRDMAEGCPLLKKISGKKYVPVGLHLGRFIEGEALAEACEDRGAQAV
LAIVLSPGEVEVVRRPGLKALARLASENHQTLLAIGRAGGIEATIALLRE
LGECRDVQENACWLLALLSQVAEFSRRIGREGGCEEVCKVLRCCSEFGGA
CPQIQSWALGCLANLLACRENRRRLLGPGLEGGGPAGGREAAEAETRPGE
WGHHNQREDKQQPEGARTNRRQREKEGGLEERGRGAAVAGRDDGCAGSDG
GLAGWIHTVLANSERVAGDRDAQYSGIACVRELAAAGPVPARAMRLTGVP
GLVGAALERFGGTDPQLREQARTALRSLSRGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR000225Armadillo
IPR016024ARM-type_fold