mRNA_L-elsbetiae_contig9235.18252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9235.18252.1
Unique NamemRNA_L-elsbetiae_contig9235.18252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9235.18252.1 vs. uniprot
Match: D7FXA7_ECTSI (FPL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA7_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.650e-74
Identity = 191/243 (78.60%), Postives = 202/243 (83.13%), Query Frame = 2 
Query:    2 AGLGPQAEEDHPREDGSLDLGGRKCLACSISDPSDGGPSDRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGRSEMYLVLDAKAFLLAVPDRHKLTNGEIKSSAPLLHLAAAADPDDEKRLRIRALSHRPVALMRPVMAPRPSSPRSSTGXXXXXXXXXXXXXXXXXXXXXGAGG-----DAGSMCDMQAWACELSFENEKSCREARKHMEGRRLRLRSEKTECITDLLEACVEGR 715
            AGLGPQAEE HP EDGSLDLGGR+CLACSIS+  +GG S R           XXXXXXXXXXXXXXXXXXXXXX GRRGRSEMYLVLD KAFLLA PDR++L NGEIKSSAPLLHLAAA DP D+KRL IRALSH PVALMRPV APR S+PRSSTGXXXXXXXXXXXXXXXX    X         DAGSMCDMQAWACEL+FENE+SCR ARKHMEGRRLRLRSEKT+CITDLLEACV+GR
Sbjct:  778 AGLGPQAEE-HPWEDGSLDLGGRECLACSISESLEGGSSGRX----------XXXXXXXXXXXXXXXXXXXXXXSGRRGRSEMYLVLDDKAFLLATPDRNRLMNGEIKSSAPLLHLAAAVDPADDKRLLIRALSHSPVALMRPVAAPRASTPRSSTGXXXXXXXXXXXXXXXXGAVSXXXXXXXXXXDAGSMCDMQAWACELTFENERSCRLARKHMEGRRLRLRSEKTKCITDLLEACVQGR 1009
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BLAST of mRNA_L-elsbetiae_contig9235.18252.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.330e-67
Identity = 175/245 (71.43%), Postives = 186/245 (75.92%), Query Frame = 2 
Query:    2 AGLGPQAEEDHPREDGSLDLGGRKCLACSISDPSDGGPSDRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGRSEMYLVLDAKAFLLAVPDRHKLTNGEIKSSAPLLHLAAAADPDDEKRLRIRALSHRPVALMRPVMAPRPSSPRSSTGXXXXXXXXXXXXXXXXXXXXXGA-------GGDAGSMCDMQAWACELSFENEKSCREARKHMEGRRLRLRSEKTECITDLLEACVEGR 715
            AGLGPQA E HP EDGSLDLGGR+CLACS S+P +GG               XXXXXXXXXXXXXXXXXXXXXX GRRGRSEMYLVLD KAFLLA PDR++L NGEIKSSAPLLHLAAA DP D+KRL IRALSH PVALMRPV APR S+P     XXXXXXXXX                     GGDAGSMCDMQAWACEL+FENE+SCR ARKHME RRL LRSEKT+CITDLLEACV+GR
Sbjct: 1230 AGLGPQAAE-HPWEDGSLDLGGRECLACSFSEPLEGGSXXXX----------XXXXXXXXXXXXXXXXXXXXXXSGRRGRSEMYLVLDDKAFLLATPDRNRLMNGEIKSSAPLLHLAAAVDPADDKRLLIRALSHSPVALMRPVAAPRASTPXXXXXXXXXXXXXXSSSNVATTEGAVSGASVESSGGGDAGSMCDMQAWACELAFENERSCRLARKHMEDRRLWLRSEKTKCITDLLEACVQGR 1463
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9235.18252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXA7_ECTSI2.650e-7478.60FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K768_9PHAE1.330e-6771.43FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9235contigL-elsbetiae_contig9235:289..2802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue4.3e-51
Seed eggNOG ortholog2880.D7FXA7
KEGG koko:K19513
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of macroautophagy by TORC1 signaling
EggNOG OGsKOG2219@1,KOG2219@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Ec32 ortholog descriptionUncharacterised protein family FPL
Ec32 orthologEc-05_004650.3
Exons3
Model size1502
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9235.18252.1prot_L-elsbetiae_contig9235.18252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9235 536..2024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.8171387-UTR-L-elsbetiae_contig9235:288..5351622816995.8171387-UTR-L-elsbetiae_contig9235:288..535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 289..535 +
1691683969.622424-UTR-L-elsbetiae_contig9235:288..5351691683969.622424-UTR-L-elsbetiae_contig9235:288..535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 289..535 +
1622816995.8605154-UTR-L-elsbetiae_contig9235:2024..28021622816995.8605154-UTR-L-elsbetiae_contig9235:2024..2802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 2025..2802 +
1691683969.6825519-UTR-L-elsbetiae_contig9235:2024..28021691683969.6825519-UTR-L-elsbetiae_contig9235:2024..2802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 2025..2802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.8275893-CDS-L-elsbetiae_contig9235:535..5851622816995.8275893-CDS-L-elsbetiae_contig9235:535..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 536..585 +
1691683969.634208-CDS-L-elsbetiae_contig9235:535..5851691683969.634208-CDS-L-elsbetiae_contig9235:535..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 536..585 +
1622816995.839859-CDS-L-elsbetiae_contig9235:1154..15271622816995.839859-CDS-L-elsbetiae_contig9235:1154..1527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 1155..1527 +
1691683969.6449192-CDS-L-elsbetiae_contig9235:1154..15271691683969.6449192-CDS-L-elsbetiae_contig9235:1154..1527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 1155..1527 +
1622816995.8506308-CDS-L-elsbetiae_contig9235:1970..20241622816995.8506308-CDS-L-elsbetiae_contig9235:1970..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 1971..2024 +
1691683969.66393-CDS-L-elsbetiae_contig9235:1970..20241691683969.66393-CDS-L-elsbetiae_contig9235:1970..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 1971..2024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9235.18252.1

>prot_L-elsbetiae_contig9235.18252.1 ID=prot_L-elsbetiae_contig9235.18252.1|Name=mRNA_L-elsbetiae_contig9235.18252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MYLVLDAKAFLLAVPDRHKLTNGEIKSSAPLLHLAAAADPDDEKRLRIRA
LSHRPVALMRPVMAPRPSSPRSSTGGGGGGGGSGGATGGAAAAEEDGAGG
DAGSMCDMQAWACELSFENEKSCREARKHMEGRRLRLRSEKTECITDLLE
ACVEGRDD*
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mRNA from alignment at L-elsbetiae_contig9235:289..2802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9235.18252.1 ID=mRNA_L-elsbetiae_contig9235.18252.1|Name=mRNA_L-elsbetiae_contig9235.18252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2514bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:289..2802+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGGCCTCGGCCCTCAAGCCGAGGAGGACCACCCTCGAGAAGACGGCT
CCCTAGACCTCGGGGGACGAAAGTGTCTCGCGTGTTCCATCTCCGACCCC
TCCGACGGGGGTCCGTCGGACAGGAGCGGCGGCGGCGGCGGCGGTGGTCG
CAGCGCGGAGGGTGGTGGTCGAAGACGCCGGTCGGGGGTGGCGGCGGCGA
TCGCGGCGGCGTCGGCGGCTGCGGCGGGCCGCCGCGGAAGGTCGGAGATG
TACCTGGTGCTCGATGCCAAGGCGTTCCTGCTGGCTGTCCCTGACAGGTA
GGTGGATTGTTGTTGTTGGCGGGGTGGGGGGTGCTGGCGCGGGGTGTGCT
GGCGCGGGGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCC
CAAGTGGAGACGTATACTACACCTTGCGGTGTATTCAGAGGTACTACACT
TTGCAGTGCATTTGCCTGTACAACTAGAACCAACCGGGGTCACACAGGAG
GAGGTGAACACTGGGGCTTTTTCTTCTTTATTTGAATTTTTTTCGGCAAG
AGGAGGGAGGTCCGAGGGAAGAAAGGTGGTGGCTGTGTGTGGTTTCTCCA
GTGTTTTATTTTGTGACTTGTCACGAAGTATTTAGCGCTAATAGATACAC
AAGTAAGGCAACACATAGGTACACTCGCTGTGTTGATTGTGGCGGGTGCC
TGTGTGGGACACTCTGCTCTCAGTACTTGCTTTCAGCATGCCCCAGCGGA
GCAGCGGGCGCTCCGCTGCTGAACCCTCCTGCGCCGTAGCCGCCCCGCCC
CGCCCCGCCTGCTGCTGACCCTCTCTTGACTCACGAATCGACCGTTCTGC
TTTCTGCGCGACACAGGCACAAGCTCACGAACGGGGAGATCAAGTCGTCG
GCCCCGCTGCTGCACCTGGCCGCGGCGGCCGACCCGGACGATGAAAAACG
CCTCCGCATCAGGGCGCTCTCTCACCGCCCCGTGGCGCTCATGCGCCCGG
TGATGGCGCCAAGACCCAGCTCTCCTAGGTCCAGCACCGGCGGCGGCGGC
GGCGGCGGCGGCAGCGGGGGGGCAACAGGCGGAGCGGCAGCGGCAGAGGA
GGACGGAGCCGGGGGGGATGCGGGCTCGATGTGCGACATGCAGGCGTGGG
CGTGCGAGCTGTCCTTTGAGAACGAGAAGAGCTGCCGCGAGGCGAGGAAA
CACATGGAGGGGAGGCGCCTGCGGTTGAGATCGGAAAAGGTGAGTCTTGC
TCTTGCCCTCGCCTGTATAGATATATATATCGCAGCAAGTATGCAGGCAG
CGTGCTTGTGCATGTTGTAGGGTTTCCGCCGTTTAAGTGTGCGGTGTGAA
AGCGGTTTCTGTTTTCGGCTTGCGCGCGCGGAGAGATTTAAGAACTTCAA
AGATGTCTCACGAAACTTACGCTGTTATGTACCGCGTCTTCCCCTCCCTC
GGGGGGCGAGGAGCCGTGTTTTTCCTGCGAACCAGCGGTGCCGTATCCAA
AAATAGTAGTTGTCCCGTTTGAGGCGGAGAGACGGCATCATCACTGAAAC
ACCACCATGCTGTACTGACGATACTTAGCCCGTTTTTGTTTCGGCTTGGT
GTTTTTTTTTGTTGCTGCGCTCCGCCCCTCATGCCCCTCGCTCGCCCTCC
GTATTCCGATGGCGTGTTCTCCTGTCGCCCAGACGGAGTGTATCACCGAC
CTGCTGGAGGCATGCGTGGAAGGCCGAGATGACTGAGGACGGCGTCGTCG
CTGTTTGGTGAAGTTTTTTTAGGTTGACGAAAGTCGGGTTGGTTAATGAC
GCCCGCCCTTTGCACTCCCTGTCCCGTATCCGTATGTATGTACAAACGTG
TACAAGTAGCACACGTGTGTAGCAGCAGTGCCCGTTTTCCCCGCGTTTAT
TGAGCGATTTTAAGGGCTGAGAATTTTGCGTTACGCATGTGGTTGATTGA
GCACGTCGGGTGTGACAAGCTTTGTAGTTGTTGTGCAGTGCCACACGCAC
GTGCTCTAGTAAGTTGCAGATGGAATCGCTGGTAGTTACATACATCTGAG
GTTGGTTCACCACCGGCGAGAGAAGCGTTGTTGAGGTGTCGAGAGCGTTT
GTATGTAGTATGTATGTGGGTGCTTTGGGGTACGGAGCGCGGGCAGATCG
ATGTTGTACCGCAGTGTTGTTTGGTTTGTGTTCGCTATCATCGGCAACAG
CAGAAGTAACTTCTGACGTGAGCCAAACGAGCGGCCGAAGGTGCTCCAAC
CTCTATTATACCTGGCACAAGAACATTGGAACATTCGGCATATGTATGTA
CATATGTACGTACATCGCACAAACCCACGACAGTAGTGCAAGCAAAGCAG
TAAATAGTGTTGAAATTTCCTCAGGGCGCGGAAATCTGCCTCGCTGGGCT
TCCTTCCCAGAGAGGCAGAGACTACATTTTGTTTTGTTTGGTAACAAGAA
AATAAACCAAACGTATCTGCTTTGCTCTCGCGTAATTCGCGGGGCCCTAA
AAGCAAGACAAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9235:289..2802+

>mRNA_L-elsbetiae_contig9235.18252.1 ID=mRNA_L-elsbetiae_contig9235.18252.1|Name=mRNA_L-elsbetiae_contig9235.18252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:289..2802+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTGGTGCTCGATGCCAAGGCGTTCCTGCTGGCTGTCCCTGACAG
ATGTACCTGGTGCTCGATGCCAAGGCGTTCCTGCTGGCTGTCCCTGACAG
GCACAAGCTCACGAACGGGGAGATCAAGTCGTCGGCCCCGCTGCTGCACC
TGGCCGCGGCGGCCGACCCGGACGATGAAAAACGCCTCCGCATCAGGGCG
CTCTCTCACCGCCCCGTGGCGCTCATGCGCCCGGTGATGGCGCCAAGACC
CAGCTCTCCTAGGTCCAGCACCGGCGGCGGCGGCGGCGGCGGCGGCAGCG
GGGGGGCAACAGGCGGAGCGGCAGCGGCAGAGGAGGACGGAGCCGGGGGG
GATGCGGGCTCGATGTGCGACATGCAGGCGTGGGCGTGCGAGCTGTCCTT
TGAGAACGAGAAGAGCTGCCGCGAGGCGAGGAAACACATGGAGGGGAGGC
GCCTGCGGTTGAGATCGGAAAAGGCACAAGCTCACGAACGGGGAGATCAA
GTCGTCGGCCCCGCTGCTGCACCTGGCCGCGGCGGCCGACCCGGACGATG
AAAAACGCCTCCGCATCAGGGCGCTCTCTCACCGCCCCGTGGCGCTCATG
CGCCCGGTGATGGCGCCAAGACCCAGCTCTCCTAGGTCCAGCACCGGCGG
CGGCGGCGGCGGCGGCGGCAGCGGGGGGGCAACAGGCGGAGCGGCAGCGG
CAGAGGAGGACGGAGCCGGGGGGGATGCGGGCTCGATGTGCGACATGCAG
GCGTGGGCGTGCGAGCTGTCCTTTGAGAACGAGAAGAGCTGCCGCGAGGC
GAGGAAACACATGGAGGGGAGGCGCCTGCGGTTGAGATCGGAAAAGACGG
AGTGTATCACCGACCTGCTGGAGGCATGCGTGGAAGGCCGAGATGACTGA
ACGGAGTGTATCACCGACCTGCTGGAGGCATGCGTGGAAGGCCGAGATGA
CTGA
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