mRNA_L-elsbetiae_contig9235.18254.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9235.18254.1
Unique NamemRNA_L-elsbetiae_contig9235.18254.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-13
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = -2 
Query:   30 MPARPERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR*AAQGR-GHAGQR 221
            MP R  R+LL+  EVEIFK V KGAT +QWAEWLRVPLEHAAA G+ D++++    G  G AG R
Sbjct:    1 MPVRRTRSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWR 65
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.280e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = -2 
Query:   66 PERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR 209
            P+R LLE  E+EIFK +  GAT +QWAEWLR PLEHAAA G+  +++R
Sbjct:    5 PKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVER 52
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 4.810e-9
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = -2 
Query:   30 PERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR*AAQGR-GHAGQR 209
            P+R LLE  EVEIFK +   AT +QWA+WLR PLEHAAA G+  +++R    G  G AG R
Sbjct:    5 PKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWR 65
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.280e-8
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = -2 
Query:   12 PERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR*AAQGRGHAGQRQRGMEG 209
            PERT L+    E+FK V  GA+ +QWAEWLRVPLEHAA+ G+ ++++R   Q    AG   RG  G
Sbjct:    5 PERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVER-LLQAGADAGAGWRGCRG 69
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.140e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = -2 
Query:   66 EVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR 182
            EVEIFK V +GAT +QWA WLR PLEHAAA G+ +++DR
Sbjct:   12 EVEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDR 50
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.750e-8
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:   69 PERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVID 209
            P+R LL+  E EI+K V  GAT +QW EWLRVPLEHAAA G+ ++++
Sbjct:    5 PKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVN 51
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BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 8.070e-8
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = -2 
Query:   66 ERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR 206
            +RT ++  EVEIFK V + AT+KQW EWLR PLEHAAA G+  +  R
Sbjct:   12 DRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTR 58
[Close]
BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-7
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = -2 
Query:    3 ERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR*AAQGRGHA------GQRQRGMEGLPA 206
            +R+ ++  E+EIFK V + AT+KQW +WLR PLEHAAA G+ D+  R    G G        G R+R + G  A
Sbjct:    9 DRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAA 82
[Close]
BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = -2 
Query:   66 PERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR 209
            P R +LE  EV IF  +  GAT +QW EWLR PLEHAAA G+F ++++
Sbjct:    3 PRRPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEK 50
[Close]
BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.230e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = -2 
Query:   66 RPERTLLEAGEVEIFKFVLKGATTKQWAEWLRVPLEHAAACGDFDVIDR 212
            R +R+ L+  EVEI + V +GAT++QW +WLR+PLEHAAA G+ D+  R
Sbjct:    8 REDRSHLDGFEVEIVELVREGATSEQWRQWLRIPLEHAAAKGNLDLFTR 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9235.18254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K513_9PHAE1.840e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE4.280e-1060.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI4.810e-954.10Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A6H5KNQ1_9PHAE1.280e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI3.140e-866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRS0_ECTSI7.750e-857.45Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LD22_ECTSI8.070e-857.45MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7FZ92_ECTSI1.030e-743.24Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LBP9_ECTSI1.090e-754.17Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JHY5_9PHAE1.230e-753.06Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9235contigL-elsbetiae_contig9235:6737..7192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.770535-UTR-L-elsbetiae_contig9235:6736..68081622816995.770535-UTR-L-elsbetiae_contig9235:6736..6808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 6737..6808 +
1691683969.6036863-UTR-L-elsbetiae_contig9235:6736..68081691683969.6036863-UTR-L-elsbetiae_contig9235:6736..6808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9235 6737..6808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.7841346-CDS-L-elsbetiae_contig9235:6808..71921622816995.7841346-CDS-L-elsbetiae_contig9235:6808..7192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 6809..7192 +
1691683969.6130393-CDS-L-elsbetiae_contig9235:6808..71921691683969.6130393-CDS-L-elsbetiae_contig9235:6808..7192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9235 6809..7192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9235.18254.1prot_L-elsbetiae_contig9235.18254.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9235 6809..7192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9235.18254.1

>prot_L-elsbetiae_contig9235.18254.1 ID=prot_L-elsbetiae_contig9235.18254.1|Name=mRNA_L-elsbetiae_contig9235.18254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MTSKSPQAAACSSGTLSHSAHCLVVAPLSTNLNISTSPASRSVRSGRAGM
LLTTELLINPAVAFVLVLVFVAAPKLEKDREMRKPAQDQRGPRVSKRFAK
RRCSRTRLPARLVARRGAVCYLCEPLIS
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mRNA from alignment at L-elsbetiae_contig9235:6737..7192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9235.18254.1 ID=mRNA_L-elsbetiae_contig9235.18254.1|Name=mRNA_L-elsbetiae_contig9235.18254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:6737..7192+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCCGGCAGCCCCTCCATCCCGCGCTGCCGTTGGCCGGCGTGGCCCCG
GCCCTGAGCAGCCTATCTATCGATGACGTCAAAATCACCGCAGGCCGCGG
CGTGCTCGAGCGGAACCCTTAGCCACTCTGCCCACTGCTTGGTAGTGGCG
CCCTTGAGCACGAACTTGAATATCTCCACCTCTCCCGCTTCCAGGAGCGT
GCGTTCCGGGCGAGCGGGCATGTTGCTGACGACAGAGCTGTTAATTAATC
CTGCTGTTGCTTTTGTGCTCGTGCTTGTTTTCGTTGCCGCCCCGAAGCTG
GAGAAGGACAGGGAGATGCGAAAGCCAGCCCAGGATCAAAGAGGGCCGCG
TGTTTCGAAAAGGTTCGCTAAAAGAAGGTGTAGCAGGACTCGCCTGCCTG
CTCGCTTGGTCGCTCGCAGGGGCGCCGTATGCTATTTATGCGAACCCCTA
ATTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9235:6737..7192+

>mRNA_L-elsbetiae_contig9235.18254.1 ID=mRNA_L-elsbetiae_contig9235.18254.1|Name=mRNA_L-elsbetiae_contig9235.18254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig9235:6737..7192+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTCAAAATCACCGCAGGCCGCGGCGTGCTCGAGCGGAACCCTTAG
CCACTCTGCCCACTGCTTGGTAGTGGCGCCCTTGAGCACGAACTTGAATA
TCTCCACCTCTCCCGCTTCCAGGAGCGTGCGTTCCGGGCGAGCGGGCATG
TTGCTGACGACAGAGCTGTTAATTAATCCTGCTGTTGCTTTTGTGCTCGT
GCTTGTTTTCGTTGCCGCCCCGAAGCTGGAGAAGGACAGGGAGATGCGAA
AGCCAGCCCAGGATCAAAGAGGGCCGCGTGTTTCGAAAAGGTTCGCTAAA
AGAAGGTGTAGCAGGACTCGCCTGCCTGCTCGCTTGGTCGCTCGCAGGGG
CGCCGTATGCTATTTATGCGAACCCCTAATTTCGATGACGTCAAAATCAC
CGCAGGCCGCGGCGTGCTCGAGCGGAACCCTTAGCCACTCTGCCCACTGC
TTGGTAGTGGCGCCCTTGAGCACGAACTTGAATATCTCCACCTCTCCCGC
TTCCAGGAGCGTGCGTTCCGGGCGAGCGGGCATGTTGCTGACGACAGAGC
TGTTAATTAATCCTGCTGTTGCTTTTGTGCTCGTGCTTGTTTTCGTTGCC
GCCCCGAAGCTGGAGAAGGACAGGGAGATGCGAAAGCCAGCCCAGGATCA
AAGAGGGCCGCGTGTTTCGAAAAGGTTCGCTAAAAGAAGGTGTAGCAGGA
CTCGCCTGCCTGCTCGCTTGGTCGCTCGCAGGGGCGCCGTATGCTATTTA
TGCGAACCCCTAATTTCG
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