mRNA_L-elsbetiae_contig9231.18251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9231.18251.1
Unique NamemRNA_L-elsbetiae_contig9231.18251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9231.18251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9231contigL-elsbetiae_contig9231:7360..7754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size395
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.7267199-CDS-L-elsbetiae_contig9231:7359..76771622816995.7267199-CDS-L-elsbetiae_contig9231:7359..7677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9231 7360..7677 +
1691683969.5759838-CDS-L-elsbetiae_contig9231:7359..76771691683969.5759838-CDS-L-elsbetiae_contig9231:7359..7677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9231 7360..7677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.7390845-UTR-L-elsbetiae_contig9231:7677..77541622816995.7390845-UTR-L-elsbetiae_contig9231:7677..7754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9231 7678..7754 +
1691683969.5911586-UTR-L-elsbetiae_contig9231:7677..77541691683969.5911586-UTR-L-elsbetiae_contig9231:7677..7754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9231 7678..7754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9231.18251.1prot_L-elsbetiae_contig9231.18251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9231 7360..7677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9231.18251.1

>prot_L-elsbetiae_contig9231.18251.1 ID=prot_L-elsbetiae_contig9231.18251.1|Name=mRNA_L-elsbetiae_contig9231.18251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MVVCGIFVVLCSELLFFPFPPVLAGFPLGLPVLAVAVLDVAAAPAYDILS
PCFFSAGFGLFCCCGELLLPAEGERFFCPPIGDFVVVSDGSKSNANVDVS
LGWGQ*
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mRNA from alignment at L-elsbetiae_contig9231:7360..7754+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9231.18251.1 ID=mRNA_L-elsbetiae_contig9231.18251.1|Name=mRNA_L-elsbetiae_contig9231.18251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=395bp|location=Sequence derived from alignment at L-elsbetiae_contig9231:7360..7754+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTTTGTGGAATCTTCGTGGTGCTTTGTTCAGAGCTTCTCTTTTT
TCCTTTCCCGCCGGTTTTGGCGGGCTTCCCACTGGGCTTGCCAGTGTTGG
CCGTGGCGGTGCTGGATGTGGCAGCAGCCCCAGCATATGACATACTGTCG
CCGTGCTTTTTCTCAGCTGGCTTCGGTTTGTTCTGCTGTTGTGGTGAGCT
GCTGCTGCCAGCAGAGGGGGAGCGATTTTTTTGTCCTCCCATCGGTGACT
TTGTGGTAGTTTCCGATGGCTCTAAGTCGAACGCCAATGTAGATGTGTCT
CTAGGATGGGGTCAGTGATGAAGGCGTCCACCACTGGAGACGGGCTGAAT
GTTTCTCTTGTCGATATGTGGCGAGGAATGCCAAGACTTGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9231:7360..7754+

>mRNA_L-elsbetiae_contig9231.18251.1 ID=mRNA_L-elsbetiae_contig9231.18251.1|Name=mRNA_L-elsbetiae_contig9231.18251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9231:7360..7754+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTTTGTGGAATCTTCGTGGTGCTTTGTTCAGAGCTTCTCTTTTT
TCCTTTCCCGCCGGTTTTGGCGGGCTTCCCACTGGGCTTGCCAGTGTTGG
CCGTGGCGGTGCTGGATGTGGCAGCAGCCCCAGCATATGACATACTGTCG
CCGTGCTTTTTCTCAGCTGGCTTCGGTTTGTTCTGCTGTTGTGGTGAGCT
GCTGCTGCCAGCAGAGGGGGAGCGATTTTTTTGTCCTCCCATCGGTGACT
TTGTGGTAGTTTCCGATGGCTCTAAGTCGAACGCCAATGTAGATGTGTCT
CTAGGATGGGGTCAGTGAATGGTGGTTTGTGGAATCTTCGTGGTGCTTTG
TTCAGAGCTTCTCTTTTTTCCTTTCCCGCCGGTTTTGGCGGGCTTCCCAC
TGGGCTTGCCAGTGTTGGCCGTGGCGGTGCTGGATGTGGCAGCAGCCCCA
GCATATGACATACTGTCGCCGTGCTTTTTCTCAGCTGGCTTCGGTTTGTT
CTGCTGTTGTGGTGAGCTGCTGCTGCCAGCAGAGGGGGAGCGATTTTTTT
GTCCTCCCATCGGTGACTTTGTGGTAGTTTCCGATGGCTCTAAGTCGAAC
GCCAATGTAGATGTGTCTCTAGGATGGGGTCAGTGA
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