mRNA_L-elsbetiae_contig9230.18249.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9230.18249.1
Unique NamemRNA_L-elsbetiae_contig9230.18249.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9230.18249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9230contigL-elsbetiae_contig9230:524..1072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.577512-CDS-L-elsbetiae_contig9230:523..8411622816995.577512-CDS-L-elsbetiae_contig9230:523..841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 524..841 +
1691683969.46874-CDS-L-elsbetiae_contig9230:523..8411691683969.46874-CDS-L-elsbetiae_contig9230:523..841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 524..841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.5891628-UTR-L-elsbetiae_contig9230:841..10721622816995.5891628-UTR-L-elsbetiae_contig9230:841..1072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 842..1072 +
1691683969.4781218-UTR-L-elsbetiae_contig9230:841..10721691683969.4781218-UTR-L-elsbetiae_contig9230:841..1072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 842..1072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9230.18249.1prot_L-elsbetiae_contig9230.18249.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9230 524..841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9230.18249.1

>prot_L-elsbetiae_contig9230.18249.1 ID=prot_L-elsbetiae_contig9230.18249.1|Name=mRNA_L-elsbetiae_contig9230.18249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
GLSHDIYVVCHKGIRQSLTKNPGVIRQWLEKNNCLDLLWFLRSSIERVPK
VSASYLPPACIISEFRNASTNNRFKSTNLPGGPGRANVRGYRAGGICQRI
FCNPG*
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mRNA from alignment at L-elsbetiae_contig9230:524..1072+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9230.18249.1 ID=mRNA_L-elsbetiae_contig9230.18249.1|Name=mRNA_L-elsbetiae_contig9230.18249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=549bp|location=Sequence derived from alignment at L-elsbetiae_contig9230:524..1072+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTTCTCACGATATATATGTCGTATGTCACAAGGGGATACGTCAGTC
ACTCACAAAAAATCCCGGAGTGATTCGGCAGTGGCTGGAAAAAAATAACT
GCTTGGACTTACTTTGGTTTTTACGCTCGTCAATCGAGCGTGTTCCAAAG
GTTTCTGCCTCCTATCTACCACCAGCCTGCATCATCTCCGAATTCCGAAA
CGCCTCCACAAACAACAGATTCAAATCTACGAATCTTCCCGGTGGCCCCG
GGCGGGCGAACGTGAGGGGGTATCGAGCTGGGGGTATCTGTCAAAGGATT
TTCTGTAATCCAGGCTGAAGAAGGGGGAGCCTCCGGCTGGCAGCTGCTGG
CTGGGAAGGTGGCAGCTGGAAAGACGAAAAAAGGAGCACCCAAGGTGTTT
TGCGTGAATCAAATGTATTTACATACACAGTGAGGCCTTGGACCTGCCCG
AGATACGCAATCAAATATTGATATCTAGTCTACTTCGAAGCATTTCTTTT
TGGTTCGGCGTAATTTTGAACAGCCAAAAACTCCTAAAACTCTTAATTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9230:524..1072+

>mRNA_L-elsbetiae_contig9230.18249.1 ID=mRNA_L-elsbetiae_contig9230.18249.1|Name=mRNA_L-elsbetiae_contig9230.18249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9230:524..1072+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTTCTCACGATATATATGTCGTATGTCACAAGGGGATACGTCAGTC
ACTCACAAAAAATCCCGGAGTGATTCGGCAGTGGCTGGAAAAAAATAACT
GCTTGGACTTACTTTGGTTTTTACGCTCGTCAATCGAGCGTGTTCCAAAG
GTTTCTGCCTCCTATCTACCACCAGCCTGCATCATCTCCGAATTCCGAAA
CGCCTCCACAAACAACAGATTCAAATCTACGAATCTTCCCGGTGGCCCCG
GGCGGGCGAACGTGAGGGGGTATCGAGCTGGGGGTATCTGTCAAAGGATT
TTCTGTAATCCAGGCTGAGGGCTTTCTCACGATATATATGTCGTATGTCA
CAAGGGGATACGTCAGTCACTCACAAAAAATCCCGGAGTGATTCGGCAGT
GGCTGGAAAAAAATAACTGCTTGGACTTACTTTGGTTTTTACGCTCGTCA
ATCGAGCGTGTTCCAAAGGTTTCTGCCTCCTATCTACCACCAGCCTGCAT
CATCTCCGAATTCCGAAACGCCTCCACAAACAACAGATTCAAATCTACGA
ATCTTCCCGGTGGCCCCGGGCGGGCGAACGTGAGGGGGTATCGAGCTGGG
GGTATCTGTCAAAGGATTTTCTGTAATCCAGGCTGA
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