mRNA_L-elsbetiae_contig9220.18242.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9220.18242.1
Unique NamemRNA_L-elsbetiae_contig9220.18242.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9220.18242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9220contigL-elsbetiae_contig9220:5569..6007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.1317046-CDS-L-elsbetiae_contig9220:5568..58771622816995.1317046-CDS-L-elsbetiae_contig9220:5568..5877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9220 5569..5877 +
1691683969.1558955-CDS-L-elsbetiae_contig9220:5568..58771691683969.1558955-CDS-L-elsbetiae_contig9220:5568..5877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9220 5569..5877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.142309-UTR-L-elsbetiae_contig9220:5877..60071622816995.142309-UTR-L-elsbetiae_contig9220:5877..6007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9220 5878..6007 +
1691683969.1693397-UTR-L-elsbetiae_contig9220:5877..60071691683969.1693397-UTR-L-elsbetiae_contig9220:5877..6007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9220 5878..6007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9220.18242.1prot_L-elsbetiae_contig9220.18242.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9220 5569..5877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9220.18242.1

>prot_L-elsbetiae_contig9220.18242.1 ID=prot_L-elsbetiae_contig9220.18242.1|Name=mRNA_L-elsbetiae_contig9220.18242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
PVSTDPPPPPPPPSLLFPSATASAVVPAAAIAAPKAAAPASEFVALLLSE
AAEEGRGVEVEVSPFLCTCRLVLPTAAVRVGPTARRAMRAASRDAILNSV
TL*
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mRNA from alignment at L-elsbetiae_contig9220:5569..6007+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9220.18242.1 ID=mRNA_L-elsbetiae_contig9220.18242.1|Name=mRNA_L-elsbetiae_contig9220.18242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig9220:5569..6007+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGTCTCGACCGATCCCCCACCACCCCCTCCGCCGCCCTCGCTCTTGTT TCCCTCGGCAACGGCAAGTGCGGTGGTACCCGCTGCTGCCATTGCTGCTC CCAAGGCGGCCGCTCCGGCTAGCGAGTTCGTGGCGTTGCTGCTGTCCGAG GCGGCTGAGGAAGGCCGCGGCGTCGAGGTCGAGGTCAGTCCTTTCCTCTG CACATGCCGGCTGGTATTGCCTACAGCAGCCGTGCGGGTTGGACCCACCG CTCGTCGAGCCATGCGAGCGGCCAGCCGCGATGCCATTTTGAACTCTGTG ACTCTGTGACGCTCGGGTCAGGTGAGATTCCTGCACCGTTAGAAGCGACA AAGTGCTCAAAAACCAGCGAAGGCGACCAGGGCACTCAAAGTGTTGGTGA TGGATTCACGTGCTACACGGGTGATGTGGTGAAGCACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9220:5569..6007+

>mRNA_L-elsbetiae_contig9220.18242.1 ID=mRNA_L-elsbetiae_contig9220.18242.1|Name=mRNA_L-elsbetiae_contig9220.18242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9220:5569..6007+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGTCTCGACCGATCCCCCACCACCCCCTCCGCCGCCCTCGCTCTTGTT
TCCCTCGGCAACGGCAAGTGCGGTGGTACCCGCTGCTGCCATTGCTGCTC
CCAAGGCGGCCGCTCCGGCTAGCGAGTTCGTGGCGTTGCTGCTGTCCGAG
GCGGCTGAGGAAGGCCGCGGCGTCGAGGTCGAGGTCAGTCCTTTCCTCTG
CACATGCCGGCTGGTATTGCCTACAGCAGCCGTGCGGGTTGGACCCACCG
CTCGTCGAGCCATGCGAGCGGCCAGCCGCGATGCCATTTTGAACTCTGTG
ACTCTGTGACCGGTCTCGACCGATCCCCCACCACCCCCTCCGCCGCCCTC
GCTCTTGTTTCCCTCGGCAACGGCAAGTGCGGTGGTACCCGCTGCTGCCA
TTGCTGCTCCCAAGGCGGCCGCTCCGGCTAGCGAGTTCGTGGCGTTGCTG
CTGTCCGAGGCGGCTGAGGAAGGCCGCGGCGTCGAGGTCGAGGTCAGTCC
TTTCCTCTGCACATGCCGGCTGGTATTGCCTACAGCAGCCGTGCGGGTTG
GACCCACCGCTCGTCGAGCCATGCGAGCGGCCAGCCGCGATGCCATTTTG
AACTCTGTGACTCTGTGA
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