mRNA_L-elsbetiae_contig922.18239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: D8LLR0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR0_ECTSI) HSP 1 Score: 363 bits (931), Expect = 7.370e-115 Identity = 241/371 (64.96%), Postives = 265/371 (71.43%), Query Frame = 3 Query: 87 RPPLAREARELLESLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHPAREQRRRCHAEAVALSTSIASLEREL--TAHPEV-GDPTQ--DVVRERLRRAITRRRKALLFLDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAEPRAVGGXXXXXXEPAPAPTHPSGDKHQRGGSLPPNLAPLDP-GPAHQSARTPSPLPPSSSPSFPSXXXXXXXXXXXXXXXXXXXYYDGGMFCSELVAALYQRLGLLDAPFPARHDYVPADFAQSLANPTGCLG 1181 R PL+ + R+LLE LDTGDLVLFDRPCLKMGGFFGAA+CAAAKV+GG PFDHIGVVVKDE GLN MVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMR EAR+FV+EV+HLPYKEG EGLLQMV+AAFRFHPA+EQRRR HAE VALS SIASLE+EL TA PE+ GD D +ERLR+AITRRR+AL++L A XXXXXXXXXXXXXXXXXXXX PS D SLP P+ P PA + +PSP PPS+ P +DGG+FCSELVAALYQRLGLLDA FPARHDYVPADFAQSL +P CLG Sbjct: 10 RAPLSGDVRDLLEGLDTGDLVLFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTAKPEMDGDAAVRVDATKERLRQAITRRRRALVYLAASGAAPEPSGRPXXXXXXXXXXXXXXXXXXXXXXXA-------------------PSND------SLPLRQTPIGPLAPASHTPLSPSPPPPSAEP------------------------FDGGLFCSELVAALYQRLGLLDAGFPARHDYVPADFAQSLGHPVDCLG 331
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A6H5L9T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T0_9PHAE) HSP 1 Score: 373 bits (958), Expect = 6.150e-114 Identity = 284/449 (63.25%), Postives = 305/449 (67.93%), Query Frame = 3 Query: 126 SLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHPAREQRRRCHAEAVALSTSIASLERELT--AHPEVGDPTQ---DVVRERLRRAITRRRKALLFLDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAEPRAVGGXXXXXXEPAPAPTHPSGDKHQRGGSLPPNLAPLDPGPAHQSARTPSPLPPSSSPSFPSXXXXXXXXXXXXXXXXXXXYYDGGMFCSELVAALYQRLGLLDAPFPARHDYVPADFAQSLANPTGCLGI-----DAGKGSTTKDAADTETTTVVDTRGDRTTSKDKTRRRTQQSDDQG--PSCVAASLPPP--IPEGGGRVALLRGAALGPGCWLRSGPP 1430 SLDTGDLV FDRPCLKMGGFFGAA+CAAAKV+GG PFDHIGVVVKDE GLN MVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMR EAR+FV+EV+HLPYKEG EGLLQMV+AAFRFHPA+EQRRR HAE VALS SIASLE+EL A PE G D +ERLRRAITR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX PS D SLP AP+ P H S +P PSXXXXX +DGG+FCSELVAALYQRLGLLDA FPARHDYVPADFAQSL +P CLG D G G D A G+R++ ++ RR ++G SC A LPPP IPEGGGRVALLRGAALGPG WLR GPP Sbjct: 9 SLDTGDLVFFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELIAKPETGGDAAVRVDATKERLRRAITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------PSDD------SLPSRQAPIGPVAPH-----------SHTPLSPSXXXXXAEP------------FDGGLFCSELVAALYQRLGLLDAGFPARHDYVPADFAQSLGHPVDCLGAVDLDEDTGGGG---DGATGN--------GERSSGEETPSRRRHPDAEEGGSSSCPAKILPPPTQIPEGGGRVALLRGAALGPGRWLRGGPP 405
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A835ZEA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA6_9STRA) HSP 1 Score: 112 bits (279), Expect = 4.410e-25 Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 3 Query: 129 LDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHPAREQRRRCHAEAVALSTSIASLEREL 581 LDTGD+VLF RPC +MG G +C K + +P+DHIGVVVKD++G N + EA+FSGV L R++RSSA I VRRL R + MR ARQ+VAE+ PYK Q+V A +PA+ +RR H L +E EL Sbjct: 1 LDTGDIVLFSRPCQRMG-VLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYK---ASYAQLVRVAVSQYPAKRRRRDLHRSMRRLEEDATFVESEL 147
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A7S1NCK3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NCK3_9EUGL) HSP 1 Score: 102 bits (255), Expect = 5.460e-22 Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 102 REARELLESLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYK 449 R +L + +D GDLVLF+R CLKM F GAAVC +AK+ S +DH+G+VV+D +G +++A F GV PL ER+RRS + IC RRL RT EMR + F EV PYK Sbjct: 3 RPDMQLPDGIDAGDLVLFNRQCLKMSPF-GAAVCFSAKLYCASKWDHVGIVVRDPDGSLHILDAGFGGVRKYPLLERLRRSKSDDICFRRLAVPRTNEMRQQLIDFTTEVVQAPYK 117
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: M1VD17_CYAM1 (Similar to mitochondrial calcium-dependent solute carrier n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VD17_CYAM1) HSP 1 Score: 107 bits (266), Expect = 7.130e-20 Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = 3 Query: 96 LAREARELLE-SLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHPA-REQRRRCHAEAVALSTSIASLEREL 581 L RE R L LD GD+VLF+R CL M GA +CA AK + S +DH+G+VV+ E+G ++EA+ SGV +RPL ER+RRS +++I RRL RTE R E F +V PYK +L V HPA ++R R HA V+ +EREL Sbjct: 80 LKRERRVTLPPGLDAGDIVLFNRRCLAMAPL-GALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIIRTERFRTELLHFAEQVLETPYKNDLGAMLVSV-----IHPADMQERERLHALLVSRRAQRMEVEREL 237
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A7J7IKN1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKN1_9RHOD) HSP 1 Score: 104 bits (259), Expect = 4.440e-19 Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 129 LDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHPA-REQRRRCHAEAVALSTSIASLEREL 581 LD GD+VLF+R CL M GA +CA AK + S +DH+G+VV+ E+G ++EA+ SGV +RPL ER+RRS +++I RRL RT+ R E F +V PYK +L V HPA ++R R HA V+ +EREL Sbjct: 90 LDAGDIVLFNRRCLAMAPL-GALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIVRTDRFRRELEHFAEQVLETPYKNDFGAMLVSV-----IHPADMQERERLHALLVSRHAQRMEVEREL 235
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A6T6KN09_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6KN09_9RHOD) HSP 1 Score: 91.7 bits (226), Expect = 7.610e-18 Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 3 Query: 114 ELLESLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAM-VEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHP-AREQRRRCHA 533 +L S+D+GD+VLF+R C M +GAA+C AK S +DH+G+VV+D + N +EA GV +R L +RV +S + I VRRL A RT+E R + F ++ PY E G GLLQ A F P +++R R HA Sbjct: 18 QLPRSVDSGDIVLFNRRCTSMT-VYGAAICFVAKFFSNSKWDHVGIVVRDPDSKNLFFLEADLGGVKLRKLSDRVTKSKSHDIAVRRLSAMRTDEFRRQLWNFAQQMTGRPY-ETGTGLLQAAQAVF--DPLTKQERERLHA 155
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: F0WJW3_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJW3_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.070e-17 Identity = 60/128 (46.88%), Postives = 84/128 (65.62%), Query Frame = 3 Query: 111 RELLESL------DTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVK------DENGLNA--MVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKE 452 ++LLESL DTGD+VLF RPCL+M +G +CA AK+ G + +DHIGV+V+ G++ ++EA+ SGV +RPL ER+ RS AS+I +RRLQ HRT E + EA+QFV V Y++ Sbjct: 15 KKLLESLIENAKLDTGDIVLFSRPCLQME-LYGGIICACAKLFGNTDWDHIGVIVRVPTSEGSAKGISEHYLLEATLSGVKLRPLEERILRSRASEIAIRRLQVHRTPEFQREAQQFVQLVQDSKYED 141
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A7S2ZBK1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBK1_9RHOD) HSP 1 Score: 95.5 bits (236), Expect = 1.940e-16 Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 114 ELLESLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAM-VEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHP-AREQRRRCHAEAVALSTSIASLEREL 581 +L +S+D+GD+VLF+R C M + GAA+C AK S +DH+G+VV+D + +EA GV +R L +RV +S++ I VRRL A RT+E R + F ++ PY E G GLLQ A F P +++R R HA + + ++REL Sbjct: 18 QLPKSVDSGDIVLFNRRCTSMPPY-GAAICIVAKFFSNSKWDHVGIVVRDPDSKQLFFLEADLGGVKLRKLSDRVTKSNSHDIAVRRLSAMRTDEFRRQLWNFAQQMTGRPY-ETGSGLLQAAQAVF--DPLTKQERERLHALLIEKKEQLTDIQREL 171
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Match: A0A7S3E6T1_9RHOD (Hypothetical protein (Fragment) n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6T1_9RHOD) HSP 1 Score: 95.5 bits (236), Expect = 2.370e-16 Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 3 Query: 114 ELLESLDTGDLVLFDRPCLKMGGFFGAAVCAAAKVLGGSPFDHIGVVVKDENGLNAM-VEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMRAEARQFVAEVAHLPYKEGGEGLLQMVAAAFRFHP-AREQRRRCHAEAVALSTSIASLEREL 581 +L +S+D+GD+VLF+R C M + GAA+C AK S +DH+G+VV+D + +EA GV +R L +RV +S++ I VRRL A RT+E R + F ++ PY E G GLLQ A F P +++R R HA + + ++REL Sbjct: 18 QLPKSVDSGDIVLFNRRCTSMPPY-GAAICIVAKFFSNSKWDHVGIVVRDPDSKQLFFLEADLGGVKLRKLSDRVTKSNSHDIAVRRLSAMRTDEFRRQLWNFAQQMTGRPY-ETGSGLLQAAQAVF--DPLTKQERERLHALLIEKKEQLTDIQREL 171 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig922.18239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig922.18239.1 >prot_L-elsbetiae_contig922.18239.1 ID=prot_L-elsbetiae_contig922.18239.1|Name=mRNA_L-elsbetiae_contig922.18239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=704bp MAQAGEEHKARDGISGNCRPPLAREARELLESLDTGDLVLFDRPCLKMGGback to top mRNA from alignment at L-elsbetiae_contig922:5643..11406+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig922.18239.1 ID=mRNA_L-elsbetiae_contig922.18239.1|Name=mRNA_L-elsbetiae_contig922.18239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5764bp|location=Sequence derived from alignment at L-elsbetiae_contig922:5643..11406+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig922:5643..11406+ >mRNA_L-elsbetiae_contig922.18239.1 ID=mRNA_L-elsbetiae_contig922.18239.1|Name=mRNA_L-elsbetiae_contig922.18239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4224bp|location=Sequence derived from alignment at L-elsbetiae_contig922:5643..11406+ (Laminarionema elsbetiae ELsaHSoW15)back to top |