mRNA_L-elsbetiae_contig922.18241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig922.18241.1
Unique NamemRNA_L-elsbetiae_contig922.18241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig922.18241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig922contigL-elsbetiae_contig922:15284..15658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.9625185-CDS-L-elsbetiae_contig922:15283..156161622816994.9625185-CDS-L-elsbetiae_contig922:15283..15616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15284..15616 +
1691683969.0288842-CDS-L-elsbetiae_contig922:15283..156161691683969.0288842-CDS-L-elsbetiae_contig922:15283..15616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig922 15284..15616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.9747856-UTR-L-elsbetiae_contig922:15616..156581622816994.9747856-UTR-L-elsbetiae_contig922:15616..15658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig922 15617..15658 +
1691683969.0397375-UTR-L-elsbetiae_contig922:15616..156581691683969.0397375-UTR-L-elsbetiae_contig922:15616..15658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig922 15617..15658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig922.18241.1prot_L-elsbetiae_contig922.18241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig922 15284..15616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig922.18241.1

>prot_L-elsbetiae_contig922.18241.1 ID=prot_L-elsbetiae_contig922.18241.1|Name=mRNA_L-elsbetiae_contig922.18241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
GERKTDTTGRRGGRVRLAAIYFAYEIVVVARVPKTPRGGCRGFRTGRVVV
GNERRPSTALAAPCNSRTKGEHALRLAREGRRWEDRNTHPFHYHGAHGGA
SGLSERREER*
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mRNA from alignment at L-elsbetiae_contig922:15284..15658+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig922.18241.1 ID=mRNA_L-elsbetiae_contig922.18241.1|Name=mRNA_L-elsbetiae_contig922.18241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig922:15284..15658+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGAGGAAAACAGACACAACTGGGAGGAGGGGGGGGCGTGTGCGGTT
GGCGGCTATTTATTTTGCGTACGAAATAGTGGTGGTGGCCCGAGTACCAA
AAACGCCAAGGGGCGGTTGCCGAGGATTCAGAACGGGGAGGGTGGTCGTT
GGTAATGAAAGAAGGCCGTCAACGGCACTTGCAGCACCGTGCAACAGTAG
GACCAAGGGCGAGCATGCGCTCCGATTGGCTAGGGAAGGAAGGCGCTGGG
AGGACCGCAACACCCATCCATTCCACTACCATGGAGCGCACGGTGGTGCC
AGCGGGTTAAGCGAACGGCGCGAAGAAAGGTAATTCCTTGGCGTTCACGA
AACAAAACCTGGCATGGAGTATTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig922:15284..15658+

>mRNA_L-elsbetiae_contig922.18241.1 ID=mRNA_L-elsbetiae_contig922.18241.1|Name=mRNA_L-elsbetiae_contig922.18241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig922:15284..15658+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGAGGAAAACAGACACAACTGGGAGGAGGGGGGGGCGTGTGCGGTT
GGCGGCTATTTATTTTGCGTACGAAATAGTGGTGGTGGCCCGAGTACCAA
AAACGCCAAGGGGCGGTTGCCGAGGATTCAGAACGGGGAGGGTGGTCGTT
GGTAATGAAAGAAGGCCGTCAACGGCACTTGCAGCACCGTGCAACAGTAG
GACCAAGGGCGAGCATGCGCTCCGATTGGCTAGGGAAGGAAGGCGCTGGG
AGGACCGCAACACCCATCCATTCCACTACCATGGAGCGCACGGTGGTGCC
AGCGGGTTAAGCGAACGGCGCGAAGAAAGGTAAGGCGAGAGGAAAACAGA
CACAACTGGGAGGAGGGGGGGGCGTGTGCGGTTGGCGGCTATTTATTTTG
CGTACGAAATAGTGGTGGTGGCCCGAGTACCAAAAACGCCAAGGGGCGGT
TGCCGAGGATTCAGAACGGGGAGGGTGGTCGTTGGTAATGAAAGAAGGCC
GTCAACGGCACTTGCAGCACCGTGCAACAGTAGGACCAAGGGCGAGCATG
CGCTCCGATTGGCTAGGGAAGGAAGGCGCTGGGAGGACCGCAACACCCAT
CCATTCCACTACCATGGAGCGCACGGTGGTGCCAGCGGGTTAAGCGAACG
GCGCGAAGAAAGGTAA
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