mRNA_L-elsbetiae_contig9219.18238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9219.18238.1
Unique NamemRNA_L-elsbetiae_contig9219.18238.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9219.18238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9219contigL-elsbetiae_contig9219:4665..5936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size319
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9219.18238.1prot_L-elsbetiae_contig9219.18238.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9219 4665..5919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.8196418-CDS-L-elsbetiae_contig9219:4664..48921622816994.8196418-CDS-L-elsbetiae_contig9219:4664..4892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 4665..4892 -
1691683968.9307687-CDS-L-elsbetiae_contig9219:4664..48921691683968.9307687-CDS-L-elsbetiae_contig9219:4664..4892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 4665..4892 -
1622816994.8317158-CDS-L-elsbetiae_contig9219:5092..51581622816994.8317158-CDS-L-elsbetiae_contig9219:5092..5158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 5093..5158 -
1691683968.9414535-CDS-L-elsbetiae_contig9219:5092..51581691683968.9414535-CDS-L-elsbetiae_contig9219:5092..5158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 5093..5158 -
1622816994.8434184-CDS-L-elsbetiae_contig9219:5913..59191622816994.8434184-CDS-L-elsbetiae_contig9219:5913..5919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 5914..5919 -
1691683968.9503276-CDS-L-elsbetiae_contig9219:5913..59191691683968.9503276-CDS-L-elsbetiae_contig9219:5913..5919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9219 5914..5919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.8545046-UTR-L-elsbetiae_contig9219:5919..59361622816994.8545046-UTR-L-elsbetiae_contig9219:5919..5936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9219 5920..5936 -
1691683968.9648597-UTR-L-elsbetiae_contig9219:5919..59361691683968.9648597-UTR-L-elsbetiae_contig9219:5919..5936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9219 5920..5936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9219.18238.1

>prot_L-elsbetiae_contig9219.18238.1 ID=prot_L-elsbetiae_contig9219.18238.1|Name=mRNA_L-elsbetiae_contig9219.18238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MEGKHSSARDGYEVSPVPPKLRQKMRELCGTIPTRENMAKFLDATKARAA
KGEPPIVERPIVSPVKSPYFPATAAREEERARNDAVAAQTPAALPEADEG
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mRNA from alignment at L-elsbetiae_contig9219:4665..5936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9219.18238.1 ID=mRNA_L-elsbetiae_contig9219.18238.1|Name=mRNA_L-elsbetiae_contig9219.18238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig9219:4665..5936- (Laminarionema elsbetiae ELsaHSoW15)
GCCTAGCTGGTCGCTCTATGGAGGTTAGAGATTTCATTCGAAAGAGATGC
ATCAACAAACTGCTGTCATGACGAACACTAGCAGAAGTGAACATGACAGC
AGCAGTGAAAGCTCCCTGGCCCCATATTTTATTTGTAGTGCAGACTATGC
TGTTGAGGGTGTGTGTGTGCGAAGTGCGTGTGTTGTGTGTGTGATATCGA
GGGTACACGCGGGTACACCAGCAGTAGATATCTTCATAACATATTTCGGC
ACGATGCCAGATAAATAGCGCATTTAATTGCGGGACGGGGTTGGAGCGTT
GGAGCAGGCTGGCACGTACGTGTGTTCGGAGGCAGTGAGTAATTTATGTC
GACAAATGTTCATCCCCCGTACGTAGACTGTGTGACCCCGGTTGGGTCGT
ATAGCTAGTCGCAGTGGAGGAAGGGGGCCAGTGAGGCAGACGACGAATAA
TAAGCCAATGTCTAATGGGAGGGTAAAAAAAAGAAAAATACTGCATCTTT
TCCTCTGATACACTGACTTGACGGCAGCAAGCTTGTGAGGAATTAAAGCT
AAATAGCCTGCTGAGTGCCAAGGTATGGTCTAACGGTGTAGTACACGTCT
CCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACAAG
ACTATTTGTGTCCGTAGGTACAAATATATTACCTAGTATGCATCTCAACA
TCTCAACTAGTCTATCTAAGCGATGATCGTGTGTGGGCTCTTCTTCGCAT
TCTTGTTCTGTCGCTCGATCAATTGCAGGGCAAACACTCATCCGCGAGAG
ACGGCTACGAGGTCAGCCCCGTCCCCCCCAAGCTTCGGCAGAAGGTACCA
CACGTAGATGTATGCGTGGCTGTACATTACGTAAAGCACGCCATCAATGT
ATTGTCTCTAGTCTAGGTACGCCAACAAGCGTTTGTTTGTTGTTATCCTC
TTGTGCTTGTGCCCTGAAGCTTGAGCCGCATGTTCGCCCGGATTCAACAT
CGAAAACAAACCGTGCCAATCAACACTGTGCTTTCGCTCAATAGATGCGA
GAGCTGTGCGGAACGATCCCGACGCGGGAGAATATGGCAAAGTTTCTGGA
CGCAACGAAGGCACGCGCTGCCAAGGGTGAACCGCCTATCGTAGAGCGTC
CTATCGTCAGCCCTGTCAAATCCCCCTATTTCCCCGCTACGGCAGCACGC
GAGGAGGAGCGTGCCCGGAACGACGCGGTAGCCGCACAAACGCCTGCGGC
CCTACCCGAGGCGGACGAAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9219:4665..5936-

>mRNA_L-elsbetiae_contig9219.18238.1 ID=mRNA_L-elsbetiae_contig9219.18238.1|Name=mRNA_L-elsbetiae_contig9219.18238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig9219:4665..5936- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGGAGGGCAAACACTCATCCGCGAGAGACGGCTACGAGGTCAG
CCCCGTCCCCCCCAAGCTTCGGCAGAAGGGCAAACACTCATCCGCGAGAG
ACGGCTACGAGGTCAGCCCCGTCCCCCCCAAGCTTCGGCAGAAGATGCGA
GAGCTGTGCGGAACGATCCCGACGCGGGAGAATATGGCAAAGTTTCTGGA
CGCAACGAAGGCACGCGCTGCCAAGGGTGAACCGCCTATCGTAGAGCGTC
CTATCGTCAGCCCTGTCAAATCCCCCTATTTCCCCGCTACGGCAGCACGC
GAGGAGGAGCGTGCCCGGAACGACGCGGTAGCCGCACAAACGCCTGCGGC
CCTACCCGAGGCGGACGAAGGTATGCGAGAGCTGTGCGGAACGATCCCGA
CGCGGGAGAATATGGCAAAGTTTCTGGACGCAACGAAGGCACGCGCTGCC
AAGGGTGAACCGCCTATCGTAGAGCGTCCTATCGTCAGCCCTGTCAAATC
CCCCTATTTCCCCGCTACGGCAGCACGCGAGGAGGAGCGTGCCCGGAACG
ACGCGGTAGCCGCACAAACGCCTGCGGCCCTACCCGAGGCGGACGAAGGT
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