mRNA_L-elsbetiae_contig9216.18236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9216.18236.1
Unique NamemRNA_L-elsbetiae_contig9216.18236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9216.18236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9216contigL-elsbetiae_contig9216:2740..5032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog2880.D7FUD5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.6990526-CDS-L-elsbetiae_contig9216:2739..29841622816994.6990526-CDS-L-elsbetiae_contig9216:2739..2984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9216 2740..2984 -
1691683968.836263-CDS-L-elsbetiae_contig9216:2739..29841691683968.836263-CDS-L-elsbetiae_contig9216:2739..2984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9216 2740..2984 -
1622816994.7111394-CDS-L-elsbetiae_contig9216:4734..50321622816994.7111394-CDS-L-elsbetiae_contig9216:4734..5032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9216 4735..5032 -
1691683968.8518763-CDS-L-elsbetiae_contig9216:4734..50321691683968.8518763-CDS-L-elsbetiae_contig9216:4734..5032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9216 4735..5032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9216.18236.1prot_L-elsbetiae_contig9216.18236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9216 2740..5032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9216.18236.1

>prot_L-elsbetiae_contig9216.18236.1 ID=prot_L-elsbetiae_contig9216.18236.1|Name=mRNA_L-elsbetiae_contig9216.18236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
SRRPCVNGGNGHGAGSGDFMPPAAAAAAAARKKRRSPSSSPPKGGKPSGA
RRAGMGASLKTPTLRHQSSGDLLSLVASREQHEGGGLSGGGLGGRGASGE
AVSPATLRGRSPAPSLPRTPDANFCSPTGVRRGCAETALPQPPRLSLPAA
AANGGSGVSPAARSGGAATLNGVVGGRGAEG
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mRNA from alignment at L-elsbetiae_contig9216:2740..5032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9216.18236.1 ID=mRNA_L-elsbetiae_contig9216.18236.1|Name=mRNA_L-elsbetiae_contig9216.18236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2293bp|location=Sequence derived from alignment at L-elsbetiae_contig9216:2740..5032- (Laminarionema elsbetiae ELsaHSoW15)
TCGAGACGACCCTGTGTGAACGGCGGAAATGGGCACGGCGCCGGCAGCGG
AGATTTCATGCCGCCGGCCGCCGCCGCCGCCGCCGCCGCCCGGAAGAAGC
GGAGAAGCCCGTCATCGTCACCTCCGAAAGGCGGCAAGCCGTCGGGGGCT
AGAAGAGCGGGGATGGGCGCGAGCCTGAAGACGCCGACCTTGCGACATCA
GAGCAGCGGGGACCTGTTGTCGCTTGTGGCCTCTCGGGAGCAGCACGAGG
GCGGAGGGCTATCTGGCGGTGGTCTCGGCGGGCGAGGAGCCAGTGGCGGT
GAGGGGAGACGGGGTTGTTTCGATTGCCTTTTCCTAGTCGTATCCTCCGG
CGACCGGGTTTTTGCCCCGGCGGTCTAGTTGGTACCTCCGAACACCTTCT
AGCAGGCAGGTCATGGGTCTGAAACCCGGTGGTGGAGCGACTTTTTCTTG
CGGAGTGAGTTTTTTTTCTCTCGCTTCCGTCCCTGGCAGTGGATAGCGCG
CTTAGCGTGTGTACACAAACTCCGACCTCGCCGTCGACGAGGGAAAGGGA
CGGCTGAACCCTTCTCGCGACGAAAATTTTAGGCCAACACCGCAGAAGGG
GGGAGTGGGGGTCTGGGGGGAAAGATCCCTTCTGTGTGACCACGGTTCAG
TACTACTCTGGCAAGATGCCCTCGTCGCAGGGAGAGCCCATAGAGCACTG
GAAATAAATGTGAAGATAAACAATCCTCCGGCTCTCTCTACCCTTGCGTC
GTTCCTGTGTGTCGTGCTCAACAAGCATAGCTCGCAGTTTTTGGAGGGTT
TGTCTGCTTGTTTGTTTTCCTTCGATTATACCGCTGGTTGATTGATCACT
ACACTATGGTTGATGGGATCCGAGTATTCAATACCGAGTAGTTTTGTGAC
GCGCGCGTACACCATTGATTCGCCTGAGACACGCACGTCGCCCGATTTCA
AGAGCCATCACCATCGTTTGAGATCAGAACCAAGCAGGAAAAAACAACCA
GTTTTCTGATTTCTCGCCTTTCCCGGAGACTGCCAAACATCAATACCCCG
AGCAGGAGCATCCCCGGCCGGGAAAATGTTCAGAACAATCTTTATTTCCA
CTAATTTCGACGTAATCACGTTGGCGAGGGAAAAGGGACAGCTGAACCCT
TCCCGCGATAAAAATGAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAA
AAAGAAAATAAAAAAGAAGAAAAAGCCCCAGTGTTCACCCCCTCCTGTGT
GACCCCGGTTGATTCTAGTTGTACAGACAAATGCCCTGCAAAGTGTAGTA
CCTCTAAGTGCACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTG
TCGCCAAAATAAATGGGAAGGACACACACACACACACCTATTTATGCCCC
TTCTCTTTTGTTTGTCCTTGACCATATCTACTCGGGTGATCTGCAGCACC
CCATGTTGTTGTTTCTTCACATTAGCTCGTATAATCGAGATTGCTAATTC
CAAAAATCTAGCAACTCACGGCCCGTGGTCACAGAAGTGCTAGAGCCACC
AGAACATCCGAAAAAGGACATATGCAGATCCACAGGGCAATGGTACACAA
AGCCGAGGAGGTACACCTATGAATATACCGGTAAAAAACATGTATCCTAT
ATGCCCCCCCGACACCGGTAGCCTACGCAAGTTTCGTCTTCAACAAACAC
ATGGGATAAAGTGTAGGGACTGGGAAAGGGGGGTTGGGGGCTTTTGGGGT
GAGGGCAAGGGTACGGACTCCCTGCCTCTATTTTGTAGATAAAATTAATG
TCTCCGCGAAGGTGGCCCCCCAACACCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCGCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCGCCGCCCCCC
CCCCCCCCCCCCNNNNGGGGAAGGGTGCGGACTCCCTTCCTTTATTTTTT
AAATAAAATTAATGTCCCCCCGAAGGGGGCCCCCCACCCCCCCCCCCCCC
CCCCCCCACGGCGTACCCGTGCGCTGCTTTCTCTTCGCCGCCAACCAGAG
GCCGTGTCCCCCGCAACACTGCGCGGAAGGTCGCCGGCACCATCGCTCCC
GAGGACGCCGGACGCAAACTTCTGTTCTCCGACCGGGGTTAGACGGGGCT
GTGCTGAAACCGCCCTCCCGCAGCCGCCGCGGCTGTCGCTGCCGGCTGCG
GCCGCGAACGGCGGGAGCGGCGTGTCTCCAGCAGCAAGAAGCGGGGGGGC
TGCTACTCTGAATGGTGTTGTGGGAGGAAGGGGGGCGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9216:2740..5032-

>mRNA_L-elsbetiae_contig9216.18236.1 ID=mRNA_L-elsbetiae_contig9216.18236.1|Name=mRNA_L-elsbetiae_contig9216.18236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig9216:2740..5032- (Laminarionema elsbetiae ELsaHSoW15)
TCGAGACGACCCTGTGTGAACGGCGGAAATGGGCACGGCGCCGGCAGCGG
AGATTTCATGCCGCCGGCCGCCGCCGCCGCCGCCGCCGCCCGGAAGAAGC
GGAGAAGCCCGTCATCGTCACCTCCGAAAGGCGGCAAGCCGTCGGGGGCT
AGAAGAGCGGGGATGGGCGCGAGCCTGAAGACGCCGACCTTGCGACATCA
GAGCAGCGGGGACCTGTTGTCGCTTGTGGCCTCTCGGGAGCAGCACGAGG
GCGGAGGGCTATCTGGCGGTGGTCTCGGCGGGCGAGGAGCCAGTGGCGTC
GAGACGACCCTGTGTGAACGGCGGAAATGGGCACGGCGCCGGCAGCGGAG
ATTTCATGCCGCCGGCCGCCGCCGCCGCCGCCGCCGCCCGGAAGAAGCGG
AGAAGCCCGTCATCGTCACCTCCGAAAGGCGGCAAGCCGTCGGGGGCTAG
AAGAGCGGGGATGGGCGCGAGCCTGAAGACGCCGACCTTGCGACATCAGA
GCAGCGGGGACCTGTTGTCGCTTGTGGCCTCTCGGGAGCAGCACGAGGGC
GGAGGGCTATCTGGCGGTGGTCTCGGCGGGCGAGGAGCCAGTGGCGAGGC
CGTGTCCCCCGCAACACTGCGCGGAAGGTCGCCGGCACCATCGCTCCCGA
GGACGCCGGACGCAAACTTCTGTTCTCCGACCGGGGTTAGACGGGGCTGT
GCTGAAACCGCCCTCCCGCAGCCGCCGCGGCTGTCGCTGCCGGCTGCGGC
CGCGAACGGCGGGAGCGGCGTGTCTCCAGCAGCAAGAAGCGGGGGGGCTG
CTACTCTGAATGGTGTTGTGGGAGGAAGGGGGGCGGAGGGGAGGCCGTGT
CCCCCGCAACACTGCGCGGAAGGTCGCCGGCACCATCGCTCCCGAGGACG
CCGGACGCAAACTTCTGTTCTCCGACCGGGGTTAGACGGGGCTGTGCTGA
AACCGCCCTCCCGCAGCCGCCGCGGCTGTCGCTGCCGGCTGCGGCCGCGA
ACGGCGGGAGCGGCGTGTCTCCAGCAGCAAGAAGCGGGGGGGCTGCTACT
CTGAATGGTGTTGTGGGAGGAAGGGGGGCGGAGGGG
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