mRNA_L-elsbetiae_contig9211.18233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9211.18233.1
Unique NamemRNA_L-elsbetiae_contig9211.18233.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9211.18233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9211contigL-elsbetiae_contig9211:5095..6421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9211.18233.1prot_L-elsbetiae_contig9211.18233.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9211 5095..6421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.5077846-CDS-L-elsbetiae_contig9211:5094..51721622816994.5077846-CDS-L-elsbetiae_contig9211:5094..5172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 5095..5172 -
1691683968.6990118-CDS-L-elsbetiae_contig9211:5094..51721691683968.6990118-CDS-L-elsbetiae_contig9211:5094..5172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 5095..5172 -
1622816994.519586-CDS-L-elsbetiae_contig9211:5921..61071622816994.519586-CDS-L-elsbetiae_contig9211:5921..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 5922..6107 -
1691683968.71309-CDS-L-elsbetiae_contig9211:5921..61071691683968.71309-CDS-L-elsbetiae_contig9211:5921..6107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 5922..6107 -
1622816994.5303645-CDS-L-elsbetiae_contig9211:6358..64211622816994.5303645-CDS-L-elsbetiae_contig9211:6358..6421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 6359..6421 -
1691683968.725083-CDS-L-elsbetiae_contig9211:6358..64211691683968.725083-CDS-L-elsbetiae_contig9211:6358..6421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9211 6359..6421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9211.18233.1

>prot_L-elsbetiae_contig9211.18233.1 ID=prot_L-elsbetiae_contig9211.18233.1|Name=mRNA_L-elsbetiae_contig9211.18233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MKRRAQAHTATEHPDPFKTHEVRLRKPSRPWTEKISCAKPPPADAEAYFM
PKRTVSKQITGEFFAWKARLISHGDLDKRGKNPKVTPEESYTPYSSLASP
FTGCSIDPK
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mRNA from alignment at L-elsbetiae_contig9211:5095..6421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9211.18233.1 ID=mRNA_L-elsbetiae_contig9211.18233.1|Name=mRNA_L-elsbetiae_contig9211.18233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1327bp|location=Sequence derived from alignment at L-elsbetiae_contig9211:5095..6421- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGGCGAGCTCAGGCCCACACAGCAACAGAGCACCCAGACCCGTT
CAAAACGCACGAGGTAAAAACGCATTTTTCGTTGAAGATACAATTCTTCA
CGGTTCAGTTAGTCTTCAGCAGTGCTGCAGTAGCTTCCGTTGGGTTGTAC
ATACGGTGATGTCACAAACATCTCCAAGTAACGTACCCCGTGTTCCCTAT
GGTATGCGTATTCACATTTTGCCCATCTTTTGGCTGTAGAGGCACGCCCG
CCGTTCACACCACGCTCAAAATATTGTCTTTAAATACCACACGTCTGGAA
TGGATGAAACACAGGTACGACTCAGAAAACCGTCAAGGCCGTGGACCGAA
AAGATCTCCTGTGCGAAGCCTCCACCCGCAGACGCCGAGGCGTACTTCAT
GCCGAAGCGAACGGTTAGCAAACAAATCACCGGCGAATTCTTCGCGTGGA
AGGCGCGACTTATTTCTCATGGAGATTTGGACAAGCGCGGCAAGAACCCG
GTGTGTGTGATATACTTTTAAAAATAAACATTTAGTCGAGGGGATGGTAC
CATGCGCTTTGTGCCGTAGTTTCGCCGCCAGAGGTGTCAAAAAGTTGTTC
TCCCTAGAGACGCCCAGTCCATAGCAGTGCGTAGTTTCGTTCATGGTTCT
GTGTTCGTGGAAGATGAGGTTTCAAAACGCTAGGAAAGTCCTGGGCGCGT
TTAGTGCCACCGTTTGCCTTTCCTTGCCTCGCCTTGAACTCACGCGTGAT
TTTTTGGAATAAGTCCTACATAAGTTTCAATTGCTTTAAATTTACTGCTG
TGGCAATATCACTTATTCTAAACTATTAGATAGCATTTTTTAATGTTTTA
AGTCAAAGAATGCGATGTGTTCTTATCAAGAAGTAGATGACAGCATCACC
ACATCACGGAGGGTTTCTCCCCGCAATACATGTTGTTTGACCCGGCAGAG
AACTGCAGGGGAGATGTTGAATCTTTTTATATTTAAGGTGTTTTTATACT
CGGCCGGCCCAATATTACGTCACTTTATGGAATACCGACTGAATCTCATG
GAGTCCCGTCTCAATGTGGTTAAGGTTCCATTTTTGATAACTGTTTTATC
TTTCAACAAGGAGGCTAGGGTGTCAATGGTAGCATCATTCGGCTAGAGGA
CTCTCATTGAGGCTCGTCTGAAGATTGTTAATACCAACCAAGGCTCCTGC
CCTCTCGCGTCTGGTGATTTTATGTTGTTTCCCGCTGGCCCCAACACAGA
AAGTCACACCGGAAGAGTCTTACACCCCTTACAGCTCACTTGCCTCGCCT
TTCACCGGGTGCAGCATAGATCCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9211:5095..6421-

>mRNA_L-elsbetiae_contig9211.18233.1 ID=mRNA_L-elsbetiae_contig9211.18233.1|Name=mRNA_L-elsbetiae_contig9211.18233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig9211:5095..6421- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGGCGAGCTCAGGCCCACACAGCAACAGAGCACCCAGACCCGTT
CAAAACGCACGAGATGAAGAGGCGAGCTCAGGCCCACACAGCAACAGAGC
ACCCAGACCCGTTCAAAACGCACGAGGTACGACTCAGAAAACCGTCAAGG
CCGTGGACCGAAAAGATCTCCTGTGCGAAGCCTCCACCCGCAGACGCCGA
GGCGTACTTCATGCCGAAGCGAACGGTTAGCAAACAAATCACCGGCGAAT
TCTTCGCGTGGAAGGCGCGACTTATTTCTCATGGAGATTTGGACAAGCGC
GGCAAGAACCCGGTACGACTCAGAAAACCGTCAAGGCCGTGGACCGAAAA
GATCTCCTGTGCGAAGCCTCCACCCGCAGACGCCGAGGCGTACTTCATGC
CGAAGCGAACGGTTAGCAAACAAATCACCGGCGAATTCTTCGCGTGGAAG
GCGCGACTTATTTCTCATGGAGATTTGGACAAGCGCGGCAAGAACCCGAA
AGTCACACCGGAAGAGTCTTACACCCCTTACAGCTCACTTGCCTCGCCTT
TCACCGGGTGCAGCATAGATCCAAAGAAAGTCACACCGGAAGAGTCTTAC
ACCCCTTACAGCTCACTTGCCTCGCCTTTCACCGGGTGCAGCATAGATCC
AAAG
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