mRNA_L-elsbetiae_contig9204.18229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9204.18229.1
Unique NamemRNA_L-elsbetiae_contig9204.18229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9204.18229.1 vs. uniprot
Match: D7FKU1_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.250e-6
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:  760 SSYFDSKMQECLSKNHKPSSPGAHVIRVLHVAEAYGARSWQW-----IQEQDGVGVEEPVKRSSGLPGSTPAWPPARASWMVPGRGMFVPAVLR 1026
            SS + +K+Q+ L+ N+K  +P     +V+ VA+AY ARSWQW                      G+ GS PA     ASWM P RG+FVPAVLR
Sbjct:  317 SSPYAAKLQKRLTTNYKLDTPEGRCRQVMLVAKAYNARSWQWPASALATSAXXXXXXXXXXAGKGVVGSKPAR--NAASWMRPRRGVFVPAVLR 408
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9204.18229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU1_ECTSI2.250e-640.43Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9204contigL-elsbetiae_contig9204:4011..6166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-17_001370.1
Exons5
Model size1029
Cds size1029
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9204.18229.1prot_L-elsbetiae_contig9204.18229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9204 4011..6166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.1389918-CDS-L-elsbetiae_contig9204:4010..41961622816994.1389918-CDS-L-elsbetiae_contig9204:4010..4196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4011..4196 +
1691683968.4658527-CDS-L-elsbetiae_contig9204:4010..41961691683968.4658527-CDS-L-elsbetiae_contig9204:4010..4196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4011..4196 +
1622816994.1527762-CDS-L-elsbetiae_contig9204:4452..45231622816994.1527762-CDS-L-elsbetiae_contig9204:4452..4523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4453..4523 +
1691683968.4781756-CDS-L-elsbetiae_contig9204:4452..45231691683968.4781756-CDS-L-elsbetiae_contig9204:4452..4523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4453..4523 +
1622816994.1722422-CDS-L-elsbetiae_contig9204:4848..49611622816994.1722422-CDS-L-elsbetiae_contig9204:4848..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4849..4961 +
1691683968.4905758-CDS-L-elsbetiae_contig9204:4848..49611691683968.4905758-CDS-L-elsbetiae_contig9204:4848..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 4849..4961 +
1622816994.1836946-CDS-L-elsbetiae_contig9204:5211..53421622816994.1836946-CDS-L-elsbetiae_contig9204:5211..5342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 5212..5342 +
1691683968.5029104-CDS-L-elsbetiae_contig9204:5211..53421691683968.5029104-CDS-L-elsbetiae_contig9204:5211..5342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 5212..5342 +
1622816994.1960905-CDS-L-elsbetiae_contig9204:5638..61661622816994.1960905-CDS-L-elsbetiae_contig9204:5638..6166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 5639..6166 +
1691683968.5122085-CDS-L-elsbetiae_contig9204:5638..61661691683968.5122085-CDS-L-elsbetiae_contig9204:5638..6166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9204 5639..6166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9204.18229.1

>prot_L-elsbetiae_contig9204.18229.1 ID=prot_L-elsbetiae_contig9204.18229.1|Name=mRNA_L-elsbetiae_contig9204.18229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
RIVRVLIKAGANVNGRQSTGHTPLHCCAMEGQECMMKDLLRAGANPTLAS
VDGQTPLHTAAQWGHAREVKTLIAAGAKINARCTKGYTPLRLAAWHGTAA
AVEALLDAGADVGVKDYMNYNILSGAFQNKYDEIIYLLLDAGADPDKTDP
EGDNPPVMLAVNNNNSQLVRSIIAAGANPNIATPNAITPVALAAQMGRTR
CLAVLLSSGASPHHVVRQSVPTPLQWAIIGLNPTCLAFLLTAGANPEERH
KCSSSYFDSKMQECLSKNHKPSSPGAHVIRVLHVAEAYGARSWQWIQEQD
GVGVEEPVKRSSGLPGSTPAWPPARASWMVPGRGMFVPAVLR*
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mRNA from alignment at L-elsbetiae_contig9204:4011..6166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9204.18229.1 ID=mRNA_L-elsbetiae_contig9204.18229.1|Name=mRNA_L-elsbetiae_contig9204.18229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2156bp|location=Sequence derived from alignment at L-elsbetiae_contig9204:4011..6166+ (Laminarionema elsbetiae ELsaHSoW15)
CGTATCGTGAGAGTCTTGATCAAAGCCGGGGCGAACGTGAACGGACGGCA
GAGCACCGGCCACACACCTCTGCATTGCTGCGCCATGGAAGGCCAGGAGT
GCATGATGAAAGATCTCCTTCGCGCTGGTGCCAATCCCACACTAGCTTCG
GTGGACGGGCAAACACCGCTGCACACCGCGGCTCAGGTGCGGCCGGGTTT
GGCCGCCATTATCGTCTGCTCCATCGCTCGTTTGTCAACATTGGTTGCCG
GGCGGTTGTCGCTGCGTGGATATTTGGTACTGTTGTGCTGGTTGTCAAGA
AGCGCGCAGCAAGTGTGACTTTTCAAGCCCGACCTCGGGCTGTTTTGAGT
CGGGGGTGGGTGTGGTTCGAAACACTTGCTTGTGCAGGGACTCCAAACAA
CCGAATTTCCTGTTCCTCCTTTCTTGCCTCGTTTAATTTTAGTGGGGTCA
CGCACGCGAGGTGAAGACGCTGATCGCTGCCGGGGCAAAGATAAACGCGC
GGTGCACGAAAGGGTAAGGTCGCTTTGGTATGTCAGACTGCTCGATGTTA
GACTATTATCCATAGGACCATCGGTGGTTGCGCTCGTCTGCACACGCTAA
TAACCAGCTTTTTTTCGCAACAACGGGAGCTGCTGGTGCTTAAAAATCCG
CGCGAAAGTTGGGAGGGAGCGCACGTGAGCTCCAACAATTTGGCGGTCAC
CTTTTGGTCAGCGTTCGCGTCCGACTCCGAACTGGCTCGCATGACTGCGC
TCCGTTCCTATCAGCTTTTCGCCAGGGTTGAACACAACGCTTGCAAGCGC
GGGCATGAGATGTGCTGACAGGCCCCCATCATTCGCAGGTACACACCGCT
TCGACTTGCCGCTTGGCACGGCACCGCTGCCGCCGTCGAAGCCCTTCTCG
ACGCCGGTGCGGATGTTGGAGTGAAGGACTACATGAACTACAACATTCTC
TGTGAGTGCCAGCTGCGTGTGACAGCAGTGCCCGGACGCGAGGATGCACC
ATACGACCTGCCTTGCTACGCCTGAGCTTGCACCTATGTATTTTATGTGC
GCGTGGCCGGGGAGGGATGCTGACGTTGATCGCATGAGTCTGAACCCCAA
GAGTGACGGCGCATGTTTTCCGCATGCGACGCACACGCGAATAAAACCCG
CCACTCTTCTCTCACCCACCCCCGGTCCGACCATCACTCGAATGCGCACA
GCTGGGGCTTTCCAGAATAAGTACGATGAGATCATCTACCTTCTCCTCGA
TGCCGGAGCAGACCCTGACAAGACCGACCCTGAAGGCGACAACCCTCCCG
TCATGCTCGCTGTCAACAACAACAACTCACAGGTAGGCGTGATTCACTGC
TACTAACTTCTGCCCTTTTATCTATTTTTATATACGTTCATTTAGCGTTC
GTTCGTGTGGAGACATTGTGGTGTATGTGAGGCACAGCAGTAGTTTTGGG
AGGCGTCTGTATTTTGATCCGTCTCCGCAAGAGTAATCGCGACTGCACCG
TTTGCCCCTCGGCGTTGCTGGCGCACCCCGTGACCGAATATGTCACTTCC
TCGGCTGATTTAAGTGCTCAGCACCGTCCCACTCCCCCCTCGTCCCTGCT
CACCATCCCCCCCCCCTCTCCTGCGCAGCTGGTCCGCTCCATCATTGCCG
CCGGCGCCAACCCCAACATCGCCACGCCCAACGCCATCACACCAGTCGCC
TTGGCGGCCCAAATGGGGCGTACCCGTTGCCTAGCGGTGCTGCTGTCATC
CGGCGCGTCTCCGCACCACGTGGTCAGGCAGAGTGTGCCCACTCCGCTCC
AGTGGGCCATCATTGGGCTCAACCCAACCTGTCTCGCGTTTCTGCTCACC
GCAGGGGCGAATCCCGAAGAGCGACACAAATGCTCGTCGTCCTACTTCGA
CTCCAAGATGCAAGAGTGCTTGAGCAAAAATCATAAACCCAGCTCACCTG
GCGCACACGTGATTCGCGTGCTTCACGTCGCTGAGGCATACGGCGCACGC
TCGTGGCAGTGGATCCAGGAACAAGATGGGGTGGGAGTGGAGGAACCCGT
GAAGCGTAGCAGCGGGCTTCCAGGATCGACTCCCGCATGGCCTCCCGCCA
GAGCATCGTGGATGGTACCCGGGCGAGGGATGTTCGTCCCCGCCGTGCTA
CGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9204:4011..6166+

>mRNA_L-elsbetiae_contig9204.18229.1 ID=mRNA_L-elsbetiae_contig9204.18229.1|Name=mRNA_L-elsbetiae_contig9204.18229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig9204:4011..6166+ (Laminarionema elsbetiae ELsaHSoW15)
CGTATCGTGAGAGTCTTGATCAAAGCCGGGGCGAACGTGAACGGACGGCA
GAGCACCGGCCACACACCTCTGCATTGCTGCGCCATGGAAGGCCAGGAGT
GCATGATGAAAGATCTCCTTCGCGCTGGTGCCAATCCCACACTAGCTTCG
GTGGACGGGCAAACACCGCTGCACACCGCGGCTCAGCGTATCGTGAGAGT
CTTGATCAAAGCCGGGGCGAACGTGAACGGACGGCAGAGCACCGGCCACA
CACCTCTGCATTGCTGCGCCATGGAAGGCCAGGAGTGCATGATGAAAGAT
CTCCTTCGCGCTGGTGCCAATCCCACACTAGCTTCGGTGGACGGGCAAAC
ACCGCTGCACACCGCGGCTCAGTGGGGTCACGCACGCGAGGTGAAGACGC
TGATCGCTGCCGGGGCAAAGATAAACGCGCGGTGCACGAAAGGTGGGGTC
ACGCACGCGAGGTGAAGACGCTGATCGCTGCCGGGGCAAAGATAAACGCG
CGGTGCACGAAAGGGTACACACCGCTTCGACTTGCCGCTTGGCACGGCAC
CGCTGCCGCCGTCGAAGCCCTTCTCGACGCCGGTGCGGATGTTGGAGTGA
AGGACTACATGAACTACAACATTCTCTGTACACACCGCTTCGACTTGCCG
CTTGGCACGGCACCGCTGCCGCCGTCGAAGCCCTTCTCGACGCCGGTGCG
GATGTTGGAGTGAAGGACTACATGAACTACAACATTCTCTCTGGGGCTTT
CCAGAATAAGTACGATGAGATCATCTACCTTCTCCTCGATGCCGGAGCAG
ACCCTGACAAGACCGACCCTGAAGGCGACAACCCTCCCGTCATGCTCGCT
GTCAACAACAACAACTCACAGCTGGGGCTTTCCAGAATAAGTACGATGAG
ATCATCTACCTTCTCCTCGATGCCGGAGCAGACCCTGACAAGACCGACCC
TGAAGGCGACAACCCTCCCGTCATGCTCGCTGTCAACAACAACAACTCAC
AGCTGGTCCGCTCCATCATTGCCGCCGGCGCCAACCCCAACATCGCCACG
CCCAACGCCATCACACCAGTCGCCTTGGCGGCCCAAATGGGGCGTACCCG
TTGCCTAGCGGTGCTGCTGTCATCCGGCGCGTCTCCGCACCACGTGGTCA
GGCAGAGTGTGCCCACTCCGCTCCAGTGGGCCATCATTGGGCTCAACCCA
ACCTGTCTCGCGTTTCTGCTCACCGCAGGGGCGAATCCCGAAGAGCGACA
CAAATGCTCGTCGTCCTACTTCGACTCCAAGATGCAAGAGTGCTTGAGCA
AAAATCATAAACCCAGCTCACCTGGCGCACACGTGATTCGCGTGCTTCAC
GTCGCTGAGGCATACGGCGCACGCTCGTGGCAGTGGATCCAGGAACAAGA
TGGGGTGGGAGTGGAGGAACCCGTGAAGCGTAGCAGCGGGCTTCCAGGAT
CGACTCCCGCATGGCCTCCCGCCAGAGCATCGTGGATGGTACCCGGGCGA
GGGATGTTCGTCCCCGCCGTGCTACGGTAACTGGTCCGCTCCATCATTGC
CGCCGGCGCCAACCCCAACATCGCCACGCCCAACGCCATCACACCAGTCG
CCTTGGCGGCCCAAATGGGGCGTACCCGTTGCCTAGCGGTGCTGCTGTCA
TCCGGCGCGTCTCCGCACCACGTGGTCAGGCAGAGTGTGCCCACTCCGCT
CCAGTGGGCCATCATTGGGCTCAACCCAACCTGTCTCGCGTTTCTGCTCA
CCGCAGGGGCGAATCCCGAAGAGCGACACAAATGCTCGTCGTCCTACTTC
GACTCCAAGATGCAAGAGTGCTTGAGCAAAAATCATAAACCCAGCTCACC
TGGCGCACACGTGATTCGCGTGCTTCACGTCGCTGAGGCATACGGCGCAC
GCTCGTGGCAGTGGATCCAGGAACAAGATGGGGTGGGAGTGGAGGAACCC
GTGAAGCGTAGCAGCGGGCTTCCAGGATCGACTCCCGCATGGCCTCCCGC
CAGAGCATCGTGGATGGTACCCGGGCGAGGGATGTTCGTCCCCGCCGTGC
TACGGTAA
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