mRNA_L-elsbetiae_contig920.18227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig920.18227.1
Unique NamemRNA_L-elsbetiae_contig920.18227.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: D8LC01_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC01_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 3.340e-168
Identity = 236/286 (82.52%), Postives = 259/286 (90.56%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEASLPQQVRNVCDLKTVSDSPQV 858
            RERKSSLSTKFRVRGIPALVI+D+ GSVIT DGR +VGDDPEG+DFPWRPKPLSELIGTEF+TK G++AG E +RGKTLA+YFSAHWCPPCRAFTPRLV+TY++LKKRAG DDVEF+FVSSDKDQAQFD+YF EMPWAAIPF D  RRRALATR GVRGIPTL TI  DGV+INQ AK +A ADAKGLEFPWWPK VEDL+V+SQSNGFHVQE+P+LIVFMEA DDVDQ+EVE+ALLPIA AEAE AKA GG P LIFFTVKSEASLP QVRNVCDLKTV DSPQ+
Sbjct:   94 RERKSSLSTKFRVRGIPALVIMDQDGSVITPDGREVVGDDPEGKDFPWRPKPLSELIGTEFVTKPGTLAGEEVVRGKTLALYFSAHWCPPCRAFTPRLVQTYKDLKKRAGSDDVEFLFVSSDKDQAQFDDYFREMPWAAIPFGDVNRRRALATRLGVRGIPTLTTIDRDGVVINQTAKGAAIADAKGLEFPWWPKAVEDLSVNSQSNGFHVQEMPSLIVFMEACDDVDQKEVEEALLPIATAEAEAAKANGGQPVLIFFTVKSEASLPTQVRNVCDLKTVPDSPQM 379          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: D7FK65_ECTSI (Nucleoredoxin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK65_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 7.920e-112
Identity = 165/199 (82.91%), Postives = 178/199 (89.45%), Query Frame = 1
Query:  262 CPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEASLPQQVRNVCDLKTVSDSPQV 858
            CPPCRAFTPRLV+TY++LKKRAG DDVEF+FVSSDKDQAQFD+YF EMPWAAIPF D  RRRALATR GVRGIPTL TI  DGV+INQ AK +A ADAKGLEFPWWPK VEDL+V+SQSNGFHVQE+P+LIVFMEA DDVDQ+EVE+ALLPIA AEAE AKA GG P LIFFTVKSEASLP QVRNVCDLKTV DSPQV
Sbjct:    9 CPPCRAFTPRLVQTYKDLKKRAGSDDVEFLFVSSDKDQAQFDDYFREMPWAAIPFGDVNRRRALATRLGVRGIPTLTTIDRDGVVINQTAKGAAIADAKGLEFPWWPKAVEDLSVNSQSNGFHVQEMPSLIVFMEACDDVDQKEVEEALLPIATAEAEAAKANGGQPVLIFFTVKSEASLPTQVRNVCDLKTVPDSPQV 207          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A6V1NWZ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWZ1_HETAK)

HSP 1 Score: 261 bits (667), Expect = 9.250e-82
Identity = 138/277 (49.82%), Postives = 179/277 (64.62%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEASLPQQVRNVCDL 831
            R+RK+ LS+KF+VRGIP+LVILDE GS+IT +GR+ V  D EG DFPWRPKP+ EL+G EF  K G+V G   I GKTL +YFSAHWC PCR FTP L K Y +LK++ G ++ E IFVS DK  +QF+EY+ EMPW AIP+ D  R   L  R  V GIP L  +  DG ++N  A+    AD     FPW P+P+EDL V ++  G  + E P+L++FME  DD+ Q E   A L +A+  A  A+  G  PAL+FF  +    +P QVR +  L
Sbjct:   93 RDRKTHLSSKFKVRGIPSLVILDEDGSLITLNGRASVQSDREGEDFPWRPKPIPELLGDEFKGKEGTV-GRSVIEGKTLGIYFSAHWCGPCRGFTPTLAKVYNKLKEK-GQNNFEVIFVSGDKSDSQFEEYYGEMPWLAIPYGDK-RIDQLNQRFEVNGIPHLVILNPDGTVLNASARGKIDADENAENFPWAPEPMEDLGVTAECMGSDINEKPSLVLFMEGVDDLQQDEAWAAGLAVAREFA--ARGGGDGPALLFFGARGGGRIPPQVRRMTGL 364          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A7S4G189_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G189_9EUGL)

HSP 1 Score: 259 bits (661), Expect = 4.120e-80
Identity = 131/274 (47.81%), Postives = 176/274 (64.23%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEASLPQQVRNV 822
            RERK +LSTKF+V+GIP  VIL   GS+IT DGRS V  DP+G DFPW+PKP  ELIG  F+ +  +     A+ GK L +YFSAHWCPPCR FTP+L + Y+ +K+     D E +F SSD+D+  FDEYF+EMPW A+P++D  R+ AL+T CGV GIPTLA I  DG +I    +     D +G +FPW+PKP++DLA H Q     V + P+L+V M+ AD   +  +  AL PIA+   E AKA G    L F    + A +  ++R++
Sbjct:  103 RERKEALSTKFKVQGIPTFVILGTDGSIITKDGRSAVTADPKGEDFPWKPKPFHELIGDAFVGQGKAPLDQSAVEGKVLGLYFSAHWCPPCRGFTPKLAEWYKAVKETLP--DFEIVFASSDRDEGSFDEYFAEMPWIALPYADRKRKEALSTLCGVEGIPTLAIIDKDGRIITTNGRGIPEMDPEGKQFPWYPKPIKDLA-HEQDG---VDDCPSLVVLMDGADQETRDAITAALEPIAKEYQEKAKASGEDEVLFFTGGPAAAGIASRLRSL 370          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A7S4G1A5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G1A5_9EUGL)

HSP 1 Score: 255 bits (652), Expect = 5.350e-79
Identity = 129/255 (50.59%), Postives = 168/255 (65.88%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPA 765
            RERK +LSTKF+V+GIP  VIL   GS+IT DGRS V  DP+G DFPW+PKP  ELIG  F+ +  +     A+ GK L +YFSAHWCPPCR FTP+L + Y+ +K+     D E +F SSD+D+  FDEYF+EMPW A+P++D  R+ AL+T CGV GIPTLA I  DG +I    +     D +G +FPW+PKP++DLA H Q     V + P+L+V M+ AD   +  +  AL PIA+   E AKA G  PA
Sbjct:  103 RERKEALSTKFKVQGIPTFVILGTDGSIITKDGRSAVTADPKGEDFPWKPKPFHELIGDAFVGQGKAPLDQSAVEGKVLGLYFSAHWCPPCRGFTPKLAEWYKAVKETLP--DFEIVFASSDRDEGSFDEYFAEMPWIALPYADRKRKEALSTLCGVEGIPTLAIIDKDGRIITTNGRGIPEMDPEGKQFPWYPKPIKDLA-HEQDG---VDDCPSLVVLMDGADQETRDAITAALEPIAKEYQEKAKASGVWPA 351          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A7S2UY08_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY08_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.650e-78
Identity = 127/279 (45.52%), Postives = 183/279 (65.59%), Query Frame = 1
Query:   10 KSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEASLPQQVRNVCDLKTVSD 846
            + +L  KF+ +GIP  VILD +G ++T +GR  V ++P    FPW P P++EL+G+EF+   G+    + + GKTL +YFSAHWCPPCR FTP+LV  Y  +K +   DD E IFVS D++Q+QFDEYF EMPW A+P++ A+R + LA   GVRGIP+   + AD  +IN+ A+     D +G  FPW P+P+EDL+V +   G+ + +VPALIVFME ADD+DQQ +   L  IA   AE  K +G    L+FFT K+   +  Q++++C ++  +D
Sbjct:   96 RRALGRKFKCQGIPFFVILDSNGEMVTDNGREGVMEEPNS--FPWHPVPITELLGSEFIGAGGTTTTPD-LSGKTLGIYFSAHWCPPCRGFTPKLVDFYNNMKSKR--DDFEIIFVSRDREQSQFDEYFGEMPWLAVPYTSASRDK-LAKSMGVRGIPSFQILDADRKVINKDARMRVENDLQGEGFPWPPQPLEDLSVDTTCMGYDINDVPALIVFMEGADDMDQQTLTTGLNEIATKYAEAGKEKGKEQTLLFFTAKASNRITSQIQSLCGIQPGAD 368          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A6T2CYP1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T2CYP1_9EUGL)

HSP 1 Score: 248 bits (632), Expect = 1.680e-76
Identity = 122/266 (45.86%), Postives = 171/266 (64.29%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTVKSEAS 798
            RERK++LS KF+V GIP+ VILD+ GS IT DGRS V +DP G +FPW+PKP  ELIG  F+ ++ +     AI GK L +YFSAHWCPPCR FTP+L + Y+ +K+     + E +F SSD+DQ+ FD+YF+EMPW A+P+ D  R+  L+  CGV GIP+   I  DG +I    +     D +G +FPW+PKPV++LA  +      + + P+ +V M+ AD   Q  V+ A+ PIA+   + AKA  G    +FFT  +EA+
Sbjct:   93 RERKAALSKKFKVDGIPSFVILDQDGSTITKDGRSAVSEDPTGEEFPWKPKPFHELIGESFIGQNKAPLDKSAIDGKVLGLYFSAHWCPPCRGFTPKLAEWYKSVKETLP--EFEIVFASSDRDQSSFDDYFAEMPWIALPYEDRKRKETLSNLCGVSGIPSFVIIDKDGSIITTNGRGIPEMDPEGKQFPWYPKPVKNLAYDTDG----INDTPSFVVLMDGADKETQDAVQAAVEPIAKEYQQKAKA-SGEDEFLFFTADAEAA 351          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A813H0J6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H0J6_POLGL)

HSP 1 Score: 221 bits (563), Expect = 1.680e-65
Identity = 118/279 (42.29%), Postives = 169/279 (60.57%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELI-GTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGP-PALIFFTVKSEASLPQQVRNVCDL 831
            RERK +LS K++V+GIP +VILD +G VIT DGR+ +  DP+G +FPW+PK L +++ G + + K G V     + GK   +YFSAHWC PCR FTP+L + YE+  K  G   +E +FVSSD+DQ  FD Y+ E PW A+ FS+   +  L+T  GV+GIP L  +  DG +I ++ + + + D +G EFPW+PKPV DLA    +    + E    I F EAAD   Q   E+A+  +A+   E AKA G   P ++F   K+   +  Q+R +  L
Sbjct:   96 RERKETLSKKYKVQGIPTVVILDGTGQVITKDGRTAISGDPKGNNFPWKPKSLKDILAGAKIIGKDGPVDA-STLHGKAFGLYFSAHWCGPCRGFTPKLAEWYEKDLKSKG---LEIVFVSSDRDQEAFDGYYGEQPWLALDFSNRAEKEQLSTLLGVQGIPNLVIVDKDGSIITKEGRGAVSNDPEGAEFPWYPKPVLDLA----AGPGPLNEATCCIAFCEAADATAQIAAEEAMASLAKKYVEEAKAAGEEDPKVVFMIAKAGGGICGQLRALMSL 366          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A813KWX7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KWX7_POLGL)

HSP 1 Score: 219 bits (557), Expect = 1.280e-64
Identity = 115/278 (41.37%), Postives = 164/278 (58.99%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGP-PALIFFTVKSEASLPQQVRNVCDL 831
            RERK  LS K++V+GIP ++ILD  G VIT DG+S +  DP+G +FPW+PK L E++    +          A+ GK   +YFSAHWCPPCR FTP+L + Y +  K  G   +E +FVSSDK Q  FDEY+ E PW A+ +S+ + +  L+   GV+GIP+   +  DG +I +    + + D +G EFPW+PKPV DLA   Q +G  + E    I F EAAD   Q+  E+A+ P+A+   E A A G   P + F   K+ + +  Q+R +  L
Sbjct:   95 RERKEKLSKKYKVQGIPTVIILDAEGQVITKDGQSAIHRDPKGVNFPWKPKSLKEILAAAKIIGKDGPVDASALHGKVFGLYFSAHWCPPCRGFTPKLAEWYAKSLKSKG---MEVVFVSSDKTQEAFDEYYGEQPWLALDYSNRSEKEELSNLFGVQGIPSFVIVDKDGSVITKDGTAAVSNDPEGAEFPWYPKPVLDLA---QGHG-PLNEAACCIAFCEAADATAQKAAEEAMAPVAKKYIEEATAAGEEDPKVTFMIAKTSSGVCGQLRKLMAL 365          
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Match: A0A7S1IHV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHV4_9EUGL)

HSP 1 Score: 218 bits (554), Expect = 3.740e-64
Identity = 113/277 (40.79%), Postives = 157/277 (56.68%), Query Frame = 1
Query:    1 RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRPKPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVKTYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRALATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDLAVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAEGGPPALIFFTV-KSEASLPQQVRNVCD 828
            R +K +LS KF+V GIP  VILD  G VIT DGR  V  DP G+DFPWRP   +E +G  F+ + G   G  A++ K L +YFSAHWCPPCR FTP+L + Y+ +K +    D E +FVSSD+DQ  FDEYF+EMPW A+PF +   + +L++   V GIP+   +  DG  I    +     D +G  FPW P  V+D+A  +      V     L+  ME AD      V  A+ P+A+     AKA G  P  +F+    S   +  ++R++C+
Sbjct:  100 RAKKDALSKKFKVSGIPTFVILDADGKVITADGRGAVSADPTGQDFPWRPPTFAEALGDSFVGQGGEKLGKSAVQDKVLGLYFSAHWCPPCRGFTPKLAEWYKTVKPKLP--DFELVFVSSDRDQGAFDEYFAEMPWLALPFENRKAKESLSSMFEVEGIPSFVIVDKDGSTITTSGRGIPQMDPEGTNFPWHPPAVKDVAGDTAGLNSSV----CLLALMEGADAAAVDAVRAAMKPLAEEYNAKAKASGDDPEFLFYVGGPSSKGICSRIRSLCN 370          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig920.18227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC01_ECTSI3.340e-16882.52Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
D7FK65_ECTSI7.920e-11282.91Nucleoredoxin, putative n=1 Tax=Ectocarpus silicul... [more]
A0A6V1NWZ1_HETAK9.250e-8249.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4G189_9EUGL4.120e-8047.81Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4G1A5_9EUGL5.350e-7950.59Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2UY08_9STRA2.650e-7845.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T2CYP1_9EUGL1.680e-7645.86Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A813H0J6_POLGL1.680e-6542.29Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813KWX7_POLGL1.280e-6441.37Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1IHV4_9EUGL3.740e-6440.79Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig920contigL-elsbetiae_contig920:28286..30870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score486.5
Seed ortholog evalue8.6e-135
Seed eggNOG ortholog2880.D8LC01
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_003930.1
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons5
Model size859
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig920.18227.1prot_L-elsbetiae_contig920.18227.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig920 28286..30870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816993.9666576-CDS-L-elsbetiae_contig920:28285..284501622816993.9666576-CDS-L-elsbetiae_contig920:28285..28450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 28286..28450 -
1691683968.3413608-CDS-L-elsbetiae_contig920:28285..284501691683968.3413608-CDS-L-elsbetiae_contig920:28285..28450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 28286..28450 -
1622816993.9821985-CDS-L-elsbetiae_contig920:28837..289721622816993.9821985-CDS-L-elsbetiae_contig920:28837..28972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 28838..28972 -
1691683968.3591979-CDS-L-elsbetiae_contig920:28837..289721691683968.3591979-CDS-L-elsbetiae_contig920:28837..28972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 28838..28972 -
1622816993.9980454-CDS-L-elsbetiae_contig920:29537..297061622816993.9980454-CDS-L-elsbetiae_contig920:29537..29706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 29538..29706 -
1691683968.3716567-CDS-L-elsbetiae_contig920:29537..297061691683968.3716567-CDS-L-elsbetiae_contig920:29537..29706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 29538..29706 -
1622816994.011785-CDS-L-elsbetiae_contig920:30112..302411622816994.011785-CDS-L-elsbetiae_contig920:30112..30241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 30113..30241 -
1691683968.382289-CDS-L-elsbetiae_contig920:30112..302411691683968.382289-CDS-L-elsbetiae_contig920:30112..30241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 30113..30241 -
1622816994.027359-CDS-L-elsbetiae_contig920:30610..308701622816994.027359-CDS-L-elsbetiae_contig920:30610..30870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 30611..30870 -
1691683968.398511-CDS-L-elsbetiae_contig920:30610..308701691683968.398511-CDS-L-elsbetiae_contig920:30610..30870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig920 30611..30870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig920.18227.1

>prot_L-elsbetiae_contig920.18227.1 ID=prot_L-elsbetiae_contig920.18227.1|Name=mRNA_L-elsbetiae_contig920.18227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
RERKSSLSTKFRVRGIPALVILDESGSVITTDGRSLVGDDPEGRDFPWRP
KPLSELIGTEFLTKSGSVAGLEAIRGKTLAVYFSAHWCPPCRAFTPRLVK
TYEELKKRAGGDDVEFIFVSSDKDQAQFDEYFSEMPWAAIPFSDATRRRA
LATRCGVRGIPTLATIGADGVMINQKAKESATADAKGLEFPWWPKPVEDL
AVHSQSNGFHVQEVPALIVFMEAADDVDQQEVEDALLPIAQAEAEIAKAE
GGPPALIFFTVKSEASLPQQVRNVCDLKTVSDSPQV
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mRNA from alignment at L-elsbetiae_contig920:28286..30870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig920.18227.1 ID=mRNA_L-elsbetiae_contig920.18227.1|Name=mRNA_L-elsbetiae_contig920.18227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2585bp|location=Sequence derived from alignment at L-elsbetiae_contig920:28286..30870- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAAAGAAAATCGTCGCTGAGCACCAAGTTCAGGGTACGAGGAATCCC GGCCCTAGTCATTTTGGACGAGAGCGGATCCGTGATCACCACGGACGGCC GGTCGCTGGTGGGCGACGATCCCGAGGGTAGGGATTTCCCCTGGAGGCCG AAGCCGCTGTCGGAGCTTATCGGGACCGAGTTCTTGACCAAGTCGGGGAG CGTTGCCGGGCTGGAGGCCATTCGCGGGAAGACGTTAGCCGTGTATTTCT CCGCACACTGGTGAGGGCGGGGAGGGCGTGAAAGTGCAGCGTGAAAGTGG TAAATAGATGCTGCATACGTTGTGGTGTGATTCGCAACAGCATGCCCATA TCCGGTGCCGATGTACGTGGGCGACGCACGGCAGAGCATGAGGTGTCCTA CATAGGTTTGTTGTGAGAGGTATATGCATATGTACCATGCTTGGTATGCT TGTACATTTTTATTGGTTTCGTTTGAGAGGTTGCGGCAGGTGTCGAACGC ACCAGCACCAGCACCAGCAGGCTGCAAGGGGGCTTCACTCGCAATACATG AGGTGATTAGTTAGCTCAACAGATGATGAGTCACTACAAGACTGGCTTTT ATTGCTTGATGTCCTGGTTGCGTCGGCAGGTGCCCTCCCTGCCGAGCCTT TACCCCGCGCTTGGTGAAGACGTACGAGGAACTCAAGAAGAGGGCGGGTG GCGACGACGTGGAGTTCATCTTCGTCAGCTCGGACAAGGACCAGGCGCAG TTCGACGAGTGAGTGTTAAGTGTCGGTGTTGGGTTAGGGTTAGTTACATA CACTGCGCGACGGCACACGGACGCATCGCGGTGTCGTCCTCTGACGGGAT TCGTGGCGCGTGGGAAGGTTGATATCATCTTAGATCTCCTACACACGTAT GTGCGTGCTCTGGTCGATCTCGCACGCACACGTGCCCTATGGCCAGGCTG TTGAACGTTTTGGAGCTCGAAAGTCTCGAAAGTCTCGTAAGTCTGCAGTT GGTTTGGTCCCACCCACCCCGTTAGCGGGACACAGCGCGTGCGATTGACA TTATGAGGCATGTTTGCTACGCGCTGATTCAGAAGCTACATGTCAGATAT CAATACTAAATAGTTGTTGATGTGGTGCTGTTGCCCCTCCTCCGCGCCGG AACGCAACGAGCAGGTACTTCAGCGAGATGCCCTGGGCGGCGATTCCTTT CAGCGACGCCACCCGAAGACGGGCGCTCGCGACGCGGTGCGGGGTGCGGG GTATCCCAACCTTGGCGACCATCGGGGCGGACGGTGTCATGATCAACCAG AAGGCCAAGGAGTCGGCTACCGCTGACGCCAAGGTAAGGTAGACTAGACG GCATGTTCGTGTCCATGTTCGTGTCCATGTCCGTGCGCCATCGTTTCACA CCAAGAAGAGTGCAGATGGCGCCGCCACTTGATCAAGAACTTGGTAGTTA AAAGGATTTTATATTTAAGAAGTTCCGGGCCCCACTTGAAATGCTCGGAT AAGAACCTGGATAAACCTAAACCTAGTGAAAGTGCCTCGCAGAAAAGTAT GAAGCGGGTCTAAATAGCGCAAGATAAGAAGTTATCAAGTGGTGGCGCCA TCTGTATCGTGCTGCTGTCGGTGTCCGCACAACACACCAGTAGCAGCAGC AGCAGCAGCAGCTCCAGAACAATTATGTCGGGGTAGGAGTGGTAAAAGGT CTGGTGTGATGTGACGCAGGCGCGACTCCGTGACGATGTTGTTGCCCCAG GCGCCTGCACGGCAAGATTCAAAGGAAGCTACGTATGTACATGAGACTTG ACGAAGCTACGATGAGGATACAGCTTGCCCAACTGCTGTCTATTTTTGCT GAAGCGGCACTATTTGCTACGGTGCGCTACAACTATATCCCATGTTAGGG TCTTGAGTTTCCGTGGTGGCCGAAGCCCGTGGAGGATCTGGCGGTACACA GCCAGAGCAACGGCTTCCACGTGCAGGAGGTGCCGGCGCTGATAGTCTTC ATGGAGGCTGCCGACGACGTAGACCAACAAGAGGTAAGCATGGCACGTGG ACCAGAAGGAAGGGAATGGGGTAGAGGTAGGCAAGCACAACAAAGGTGCG TTCAAACCAGTGATAGGCACGCGCGCTCACACACACACGCGACTGCTGTT CACGCCAACGAAACATCTTGTGTTGATGTGAAACCGTTCAGGGCTAGACT CAGACCTCGGGGGGCGCATCTTCGCGGGCAGGGTAAATGGGCACAACTTG GTGGTTTTAGTAAAGAAGCATGCGGTACCCGGAGATTCGATGTTGCTCGG CCTCCGCATTTGTGTTGGGCTGTAACGTGACGTGAATGCTCTTGAGACAT AGGAATATGTATGCCACCGCCTCGGTACATGAGAAAGTAGTCTTACTCGG CAGCTCATTTCCAAAACTAGGTGGAAGATGCCCTGTTGCCCATCGCCCAA GCCGAGGCCGAGATCGCGAAGGCGGAGGGCGGTCCCCCAGCCTTGATATT CTTCACGGTGAAGTCGGAAGCGAGCCTGCCCCAGCAAGTCCGCAACGTTT GCGACCTCAAGACGGTGTCCGATTCTCCGCAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig920:28286..30870-

>mRNA_L-elsbetiae_contig920.18227.1 ID=mRNA_L-elsbetiae_contig920.18227.1|Name=mRNA_L-elsbetiae_contig920.18227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig920:28286..30870- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAAAGAAAATCGTCGCTGAGCACCAAGTTCAGGGTACGAGGAATCCC
GGCCCTAGTCATTTTGGACGAGAGCGGATCCGTGATCACCACGGACGGCC
GGTCGCTGGTGGGCGACGATCCCGAGGGTAGGGATTTCCCCTGGAGGCCG
AAGCCGCTGTCGGAGCTTATCGGGACCGAGTTCTTGACCAAGTCGGGGAG
CGTTGCCGGGCTGGAGGCCATTCGCGGGAAGACGTTAGCCGTGTATTTCT
CCGCACACTGAGGGAAAGAAAATCGTCGCTGAGCACCAAGTTCAGGGTAC
GAGGAATCCCGGCCCTAGTCATTTTGGACGAGAGCGGATCCGTGATCACC
ACGGACGGCCGGTCGCTGGTGGGCGACGATCCCGAGGGTAGGGATTTCCC
CTGGAGGCCGAAGCCGCTGTCGGAGCTTATCGGGACCGAGTTCTTGACCA
AGTCGGGGAGCGTTGCCGGGCTGGAGGCCATTCGCGGGAAGACGTTAGCC
GTGTATTTCTCCGCACACTGGTGCCCTCCCTGCCGAGCCTTTACCCCGCG
CTTGGTGAAGACGTACGAGGAACTCAAGAAGAGGGCGGGTGGCGACGACG
TGGAGTTCATCTTCGTCAGCTCGGACAAGGACCAGGCGCAGTTCGACGAG
TGCCCTCCCTGCCGAGCCTTTACCCCGCGCTTGGTGAAGACGTACGAGGA
ACTCAAGAAGAGGGCGGGTGGCGACGACGTGGAGTTCATCTTCGTCAGCT
CGGACAAGGACCAGGCGCAGTTCGACGAGTACTTCAGCGAGATGCCCTGG
GCGGCGATTCCTTTCAGCGACGCCACCCGAAGACGGGCGCTCGCGACGCG
GTGCGGGGTGCGGGGTATCCCAACCTTGGCGACCATCGGGGCGGACGGTG
TCATGATCAACCAGAAGGCCAAGGAGTCGGCTACCGCTGACGCCAAGGTA
CTTCAGCGAGATGCCCTGGGCGGCGATTCCTTTCAGCGACGCCACCCGAA
GACGGGCGCTCGCGACGCGGTGCGGGGTGCGGGGTATCCCAACCTTGGCG
ACCATCGGGGCGGACGGTGTCATGATCAACCAGAAGGCCAAGGAGTCGGC
TACCGCTGACGCCAAGGGTCTTGAGTTTCCGTGGTGGCCGAAGCCCGTGG
AGGATCTGGCGGTACACAGCCAGAGCAACGGCTTCCACGTGCAGGAGGTG
CCGGCGCTGATAGTCTTCATGGAGGCTGCCGACGACGTAGACCAACAAGA
GGGTCTTGAGTTTCCGTGGTGGCCGAAGCCCGTGGAGGATCTGGCGGTAC
ACAGCCAGAGCAACGGCTTCCACGTGCAGGAGGTGCCGGCGCTGATAGTC
TTCATGGAGGCTGCCGACGACGTAGACCAACAAGAGGTGGAAGATGCCCT
GTTGCCCATCGCCCAAGCCGAGGCCGAGATCGCGAAGGCGGAGGGCGGTC
CCCCAGCCTTGATATTCTTCACGGTGAAGTCGGAAGCGAGCCTGCCCCAG
CAAGTCCGCAACGTTTGCGACCTCAAGACGGTGTCCGATTCTCCGCAGGT
AGTGGAAGATGCCCTGTTGCCCATCGCCCAAGCCGAGGCCGAGATCGCGA
AGGCGGAGGGCGGTCCCCCAGCCTTGATATTCTTCACGGTGAAGTCGGAA
GCGAGCCTGCCCCAGCAAGTCCGCAACGTTTGCGACCTCAAGACGGTGTC
CGATTCTCCGCAGGTA
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