mRNA_L-elsbetiae_contig9197.18215.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9197.18215.1
Unique NamemRNA_L-elsbetiae_contig9197.18215.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9197.18215.1 vs. uniprot
Match: D8LB66_ECTSI (Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.140e-11
Identity = 36/48 (75.00%), Postives = 36/48 (75.00%), Query Frame = -1 
Query:   49 GRGGSTDAVGKDDDETATMPWWGLFDARDEEVELVCSELLTLYRAHDD 192
            GRGG  D      DETAT PWW LFDARDEEVELVCSELL LYRAH D
Sbjct:  344 GRGGDEDQG----DETATKPWWRLFDARDEEVELVCSELLALYRAHGD 387
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9197.18215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB66_ECTSI1.140e-1175.00Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9197contigL-elsbetiae_contig9197:900..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.6508038-CDS-L-elsbetiae_contig9197:899..12501622816992.6508038-CDS-L-elsbetiae_contig9197:899..1250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9197 900..1250 +
1691683967.2950013-CDS-L-elsbetiae_contig9197:899..12501691683967.2950013-CDS-L-elsbetiae_contig9197:899..1250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9197 900..1250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9197.18215.1prot_L-elsbetiae_contig9197.18215.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9197 900..1250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9197.18215.1

>prot_L-elsbetiae_contig9197.18215.1 ID=prot_L-elsbetiae_contig9197.18215.1|Name=mRNA_L-elsbetiae_contig9197.18215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
ATTLAATVAVVAVNIFVVVRSVQRQEFRAHQLHLLVTRVEQPPPRHGCGL
VVVFADSIGAAAPARAAYPVFASPTDNHASGTRSSCRVKRRGRRRRRRWW
RPSCNIGWRWRWRWRRR
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mRNA from alignment at L-elsbetiae_contig9197:900..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9197.18215.1 ID=mRNA_L-elsbetiae_contig9197.18215.1|Name=mRNA_L-elsbetiae_contig9197.18215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=353bp|location=Sequence derived from alignment at L-elsbetiae_contig9197:900..1252+ (Laminarionema elsbetiae ELsaHSoW15)
GCTACCACCCTTGCCGCTACTGTTGCAGTTGTTGCTGTCAACATCTTTGT
CGTCGTGCGCTCGGTACAGCGTCAAGAGTTCCGAGCACACCAGCTCCACC
TCCTCGTCACGCGCGTCGAACAGCCCCCACCACGGCATGGTTGCGGTCTC
GTCGTCGTCTTTGCCGACAGCATCGGTGCTGCCGCCCCTGCCCGCGCCGC
CTACCCCGTGTTCGCTAGCCCCACCGACAATCACGCTAGCGGCACTCGCT
CTTCCTGTAGAGTGAAGCGGCGGGGGCGGAGGCGGAGGAGGCGGTGGTGG
CGGCCGTCCTGCAACATAGGGTGGCGGTGGCGGTGGCGGTGGAGGCGGCG
GCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9197:900..1252+

>mRNA_L-elsbetiae_contig9197.18215.1 ID=mRNA_L-elsbetiae_contig9197.18215.1|Name=mRNA_L-elsbetiae_contig9197.18215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig9197:900..1252+ (Laminarionema elsbetiae ELsaHSoW15)
GCTACCACCCTTGCCGCTACTGTTGCAGTTGTTGCTGTCAACATCTTTGT
CGTCGTGCGCTCGGTACAGCGTCAAGAGTTCCGAGCACACCAGCTCCACC
TCCTCGTCACGCGCGTCGAACAGCCCCCACCACGGCATGGTTGCGGTCTC
GTCGTCGTCTTTGCCGACAGCATCGGTGCTGCCGCCCCTGCCCGCGCCGC
CTACCCCGTGTTCGCTAGCCCCACCGACAATCACGCTAGCGGCACTCGCT
CTTCCTGTAGAGTGAAGCGGCGGGGGCGGAGGCGGAGGAGGCGGTGGTGG
CGGCCGTCCTGCAACATAGGGTGGCGGTGGCGGTGGCGGTGGAGGCGGCG
GGCTACCACCCTTGCCGCTACTGTTGCAGTTGTTGCTGTCAACATCTTTG
TCGTCGTGCGCTCGGTACAGCGTCAAGAGTTCCGAGCACACCAGCTCCAC
CTCCTCGTCACGCGCGTCGAACAGCCCCCACCACGGCATGGTTGCGGTCT
CGTCGTCGTCTTTGCCGACAGCATCGGTGCTGCCGCCCCTGCCCGCGCCG
CCTACCCCGTGTTCGCTAGCCCCACCGACAATCACGCTAGCGGCACTCGC
TCTTCCTGTAGAGTGAAGCGGCGGGGGCGGAGGCGGAGGAGGCGGTGGTG
GCGGCCGTCCTGCAACATAGGGTGGCGGTGGCGGTGGCGGTGGAGGCGGC
GG
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