mRNA_L-elsbetiae_contig9193.18214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9193.18214.1
Unique NamemRNA_L-elsbetiae_contig9193.18214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9193.18214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9193contigL-elsbetiae_contig9193:7437..7732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size268
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9193.18214.1prot_L-elsbetiae_contig9193.18214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9193 7486..7678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.5777075-UTR-L-elsbetiae_contig9193:7436..74851622816992.5777075-UTR-L-elsbetiae_contig9193:7436..7485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9193 7437..7485 +
1691683967.2527032-UTR-L-elsbetiae_contig9193:7436..74851691683967.2527032-UTR-L-elsbetiae_contig9193:7436..7485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9193 7437..7485 +
1622816992.6189039-UTR-L-elsbetiae_contig9193:7678..77321622816992.6189039-UTR-L-elsbetiae_contig9193:7678..7732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9193 7679..7732 +
1691683967.2857687-UTR-L-elsbetiae_contig9193:7678..77321691683967.2857687-UTR-L-elsbetiae_contig9193:7678..7732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9193 7679..7732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.5921745-CDS-L-elsbetiae_contig9193:7485..75391622816992.5921745-CDS-L-elsbetiae_contig9193:7485..7539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9193 7486..7539 +
1691683967.2654407-CDS-L-elsbetiae_contig9193:7485..75391691683967.2654407-CDS-L-elsbetiae_contig9193:7485..7539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9193 7486..7539 +
1622816992.6082952-CDS-L-elsbetiae_contig9193:7567..76781622816992.6082952-CDS-L-elsbetiae_contig9193:7567..7678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9193 7568..7678 +
1691683967.2769613-CDS-L-elsbetiae_contig9193:7567..76781691683967.2769613-CDS-L-elsbetiae_contig9193:7567..7678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9193 7568..7678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9193.18214.1

>prot_L-elsbetiae_contig9193.18214.1 ID=prot_L-elsbetiae_contig9193.18214.1|Name=mRNA_L-elsbetiae_contig9193.18214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MLQGCDFIITQCTLVRSNYHVQNLADISCSTFDPIHLVYHRLPEPVRGTR
TAYT*
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mRNA from alignment at L-elsbetiae_contig9193:7437..7732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9193.18214.1 ID=mRNA_L-elsbetiae_contig9193.18214.1|Name=mRNA_L-elsbetiae_contig9193.18214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=296bp|location=Sequence derived from alignment at L-elsbetiae_contig9193:7437..7732+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGTAGTGGCACCCCACCTCCTGCAACATACTTCGAAAAGCGGGTAA
TGTTGCAGGGATGCGACTTTATTATCACGCAGTGCACTCTTGTACGGAGT
AATGAAAGGTAGTAATTTGTTTTCTTGTCACTATCATGTTCAAAATCTCG
CGGACATATCGTGTTCCACCTTTGACCCGATACATCTTGTCTACCACAGG
CTACCTGAACCTGTCAGGGGCACAAGAACCGCCTACACATGATCATGAAC
TAGAAAATGTCGGTGAAGAAAGACAACGCCAGCAAAAACAAAAATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9193:7437..7732+

>mRNA_L-elsbetiae_contig9193.18214.1 ID=mRNA_L-elsbetiae_contig9193.18214.1|Name=mRNA_L-elsbetiae_contig9193.18214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig9193:7437..7732+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCAGGGATGCGACTTTATTATCACGCAGTGCACTCTTGTACGGAG
TAATATGTTGCAGGGATGCGACTTTATTATCACGCAGTGCACTCTTGTAC
GGAGTAATTATCATGTTCAAAATCTCGCGGACATATCGTGTTCCACCTTT
GACCCGATACATCTTGTCTACCACAGGCTACCTGAACCTGTCAGGGGCAC
AAGAACCGCCTACACATGATATCATGTTCAAAATCTCGCGGACATATCGT
GTTCCACCTTTGACCCGATACATCTTGTCTACCACAGGCTACCTGAACCT
GTCAGGGGCACAAGAACCGCCTACACATGA
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