prot_L-elsbetiae_contig919.18208.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig919.18208.1
Unique Nameprot_L-elsbetiae_contig919.18208.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length121
Homology
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BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-9
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 0 
Query:    5 PASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLYAAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLSRD 108
            PA  IS  AL+  A+RL++M+ P  R +WGR  +E  +   LV  Y  ++G +W  +   GL R   V  +  ++F    T++A +LLGG L ++DD+  +S D
Sbjct:   89 PALLISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGVL-VTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTD 191
[Close]
BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.920e-9
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0 
Query:    1 MIGGPASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLYAAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLSRD 108
            MI  P   IS  AL+  A+RL++M+ P  R +WGR  +E  +   LV  Y  ++G +W  +   G+ R   V +   ++F    T++A +L+GG L ++DD+  +S D
Sbjct:   85 MIEFPVLLISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLATL-ELFSGSTTVVAGVLVGGRLNKVDDLLHMSTD 191
[Close]
BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.780e-7
Identity = 33/101 (32.67%), Postives = 61/101 (60.40%), Query Frame = 0 
Query:   12 CALIAW---AIRLVIMYDPAKRKRWGRHVKEDA-MFRALVWLYAAIQGVVWLVMPFYGLQRVS--FVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLS 106
            C ++A+    +R+++MY P++R+RWGR++K++A M + L+  Y  ++   W+V+   GL RV+   VT +  D    + TL A + L G L++  D+  +S
Sbjct:   89 CLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVKID---TVVTLSASLALFGQLRRTQDVFKVS 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX00_9PHAE1.030e-935.58RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI1.920e-933.33Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
D8LLA9_ECTSI3.780e-732.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..120
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..65
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig919contigL-elsbetiae_contig919:29902..30549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig919.18208.1mRNA_L-elsbetiae_contig919.18208.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig919 29537..30763 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig919.18208.1 ID=prot_L-elsbetiae_contig919.18208.1|Name=mRNA_L-elsbetiae_contig919.18208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MIGGPASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLY
AAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMD
DICDLSRDSLFWSCNAWPHR*
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